Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: LSM2 ENSPTRG00000017986

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Description

LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:VGNC Symbol;Acc:VGNC:12652]

Location

Chromosome 6: 31,956,017-31,965,863 reverse strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 3 transcripts (splice variants) and 180 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000033228.4	LSM2-201	1117	95aa	ENSPTRP00000030701.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XHL1 H2QSP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000080501.1	LSM2-202	288	95aa	ENSPTRP00000066137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XHL1 H2QSP4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000105853.1	LSM2-203	228	75aa	ENSPTRP00000085632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T8S5	-

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Summary

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