Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CACNA2D4 ENSPTRG00000004521

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Description

calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:VGNC Symbol;Acc:VGNC:8352]

Location

Chromosome 12: 1,935,904-2,062,202 reverse strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 7 transcripts (splice variants), 317 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000099494.1	CACNA2D4-206	3465	1154aa	ENSPTRP00000072604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S6D0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000008372.7	CACNA2D4-202	6281	1073aa	ENSPTRP00000007735.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X605 H2Q570	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000102200.1	CACNA2D4-203	3345	1114aa	ENSPTRP00000078509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SN88	-
ENSPTRT00000094128.1	CACNA2D4-204	3339	1112aa	ENSPTRP00000067241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRC8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000105689.1	CACNA2D4-205	3288	1095aa	ENSPTRP00000082061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SYP5	-
ENSPTRT00000084341.1	CACNA2D4-201	2502	267aa	ENSPTRP00000079382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQR9 A0A6D2W6S8	-
ENSPTRT00000089623.1	CACNA2D4-207	2343	780aa	ENSPTRP00000078730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SP32	-

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Summary

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