Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: clk2a ENSDARG00000062954

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Description

CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]

Gene Synonyms

fb20c02, si:ch211-81a5.7, wu:fb20c02

Location

Chromosome 19: 9,150,014-9,169,225 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 5 transcripts (splice variants), 217 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127803.4	clk2a-202	2336	526aa	ENSDARP00000112318.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8U4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000091533.7	clk2a-201	2292	527aa	ENSDARP00000085966.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8U5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000142910.3	clk2a-205	2192	170aa	ENSDARP00000116449.1	Nonsense mediated decay	F6PAG4	-
ENSDART00000135285.2	clk2a-203	835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000136681.3	clk2a-204	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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