Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL11A1 ENSBTAG00000021217

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Description

collagen type XI alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:50080]

Location

Primary_assembly 3: 40,305,057-40,530,663 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 6 transcripts (splice variants), 296 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000028276.6	COL11A1-202	7328	1817aa	ENSBTAP00000028276.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N0K0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000134409.1	COL11A1-203	7292	1805aa	ENSBTAP00000086795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000104484.1	COL11A1-204	7238	1787aa	ENSBTAP00000077869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000112447.1	COL11A1-205	7175	1766aa	ENSBTAP00000081407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000122513.1	COL11A1-206	6947	1690aa	ENSBTAP00000090850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000103450.1	COL11A1-201	2654	780aa	ENSBTAP00000078980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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