Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RAPGEF1 ENSBTAG00000020791

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Description

Rap guanine nucleotide exchange factor 1 [Source:VGNC Symbol;Acc:VGNC:33722]

Location

Primary_assembly 11: 101,698,360-101,834,283 reverse strand.

ARS-UCD1.3:CM008178.2

About this gene

This gene has 5 transcripts (splice variants), 248 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066818.2	RAPGEF1-205	4817	1263aa	ENSBTAP00000060297.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000086284.2	RAPGEF1-203	4432	1141aa	ENSBTAP00000064183.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N3N1	-
ENSBTAT00000076502.2	RAPGEF1-204	4318	1103aa	ENSBTAP00000066577.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MCQ4	-
ENSBTAT00000078029.2	RAPGEF1-202	4231	1094aa	ENSBTAP00000062071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LPP9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000066386.2	RAPGEF1-201	4214	1085aa	ENSBTAP00000065294.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M4X5	-

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Summary

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