Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ITGA6 ENSBTAG00000017266

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Description

integrin subunit alpha 6 [Source:VGNC Symbol;Acc:VGNC:30318]

Location

Primary_assembly 2: 24,092,591-24,179,369 reverse strand.

ARS-UCD1.3:CM008169.2

About this gene

This gene has 4 transcripts (splice variants), 364 orthologues, 17 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022960.6	ITGA6-201	4612	1130aa	ENSBTAP00000022960.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BFQ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000085126.2	ITGA6-202	4495	1091aa	ENSBTAP00000066450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M8K4	-
ENSBTAT00000094634.1	ITGA6-203	4480	1086aa	ENSBTAP00000091923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000130597.1	ITGA6-204	4263	1073aa	ENSBTAP00000079276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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