Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SFPQ ENSBTAG00000016328

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Description

splicing factor proline and glutamine rich [Source:VGNC Symbol;Acc:VGNC:34518]

Location

Primary_assembly 3: 110,557,926-110,571,478 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 3 transcripts (splice variants), 215 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000021719.7	SFPQ-203	2792	728aa	ENSBTAP00000021719.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BQ37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000080233.2	SFPQ-202	2131	669aa	ENSBTAP00000060140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXA1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113331.1	SFPQ-201	2124	675aa	ENSBTAP00000084559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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