Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC8A1 ENSBTAG00000013861

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Description

solute carrier family 8 member A1 [Source:VGNC Symbol;Acc:VGNC:34935]

Location

Primary_assembly 11: 22,407,417-22,855,023 reverse strand.

ARS-UCD1.3:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 289 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022795.6	SLC8A1-204	5957	962aa	ENSBTAP00000022795.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MC36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000111208.1	SLC8A1-201	5966	941aa	ENSBTAP00000094050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000099552.1	SLC8A1-202	5949	934aa	ENSBTAP00000084998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000018452.6	SLC8A1-203	5937	958aa	ENSBTAP00000018452.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E655	-

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Summary

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