Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PBX1 ENSBTAG00000013801

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Description

PBX homeobox 1 [Source:VGNC Symbol;Acc:VGNC:32607]

Location

Primary_assembly 3: 4,146,675-4,480,768 reverse strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 5 transcripts (splice variants), 149 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000085614.2	PBX1-202	2466	430aa	ENSBTAP00000062516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000018349.7	PBX1-201	2421	406aa	ENSBTAP00000018349.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MJ02	-
ENSBTAT00000125945.1	PBX1-203	2193	339aa	ENSBTAP00000082144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000088274.1	PBX1-205	1500	99aa	ENSBTAP00000081104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000067364.2	PBX1-204	1286	347aa	ENSBTAP00000073183.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MMW2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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