Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: COL4A1 ENSBTAG00000012849

.

Description

collagen type IV alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:50081]

Location

Primary_assembly 12: 84,863,917-84,995,777 reverse strand.

ARS-UCD1.3:CM008179.2

About this gene

This gene has 6 transcripts (splice variants), 187 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000129888.1	COL4A1-203	6037	1683aa	ENSBTAP00000096254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000105021.1	COL4A1-204	5986	1680aa	ENSBTAP00000075361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000114680.1	COL4A1-201	5950	1667aa	ENSBTAP00000084149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000076567.2	COL4A1-202	5783	1656aa	ENSBTAP00000063200.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LZV6	-
ENSBTAT00000035335.5	COL4A1-205	5770	1669aa	ENSBTAP00000035211.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SIB2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000120266.1	COL4A1-206	1576	520aa	ENSBTAP00000088062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Summary

.

.