Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RARA ENSBTAG00000012500

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Description

retinoic acid receptor alpha [Source:VGNC Symbol;Acc:VGNC:33729]

Location

Primary_assembly 19: 40,560,016-40,595,283 forward strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 331 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000074145.2	RARA-203	2771	477aa	ENSBTAP00000061984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MWQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000016586.6	RARA-201	3247	462aa	ENSBTAP00000016586.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MWQ3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000077691.2	RARA-204	2916	459aa	ENSBTAP00000068364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M468	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000107762.1	RARA-202	2435	365aa	ENSBTAP00000076098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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