Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NCAM1 ENSBTAG00000005710

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Description

neural cell adhesion molecule 1 [Source:VGNC Symbol;Acc:VGNC:31898]

Location

Primary_assembly 15: 23,472,469-23,833,218 forward strand.

ARS-UCD1.3:CM008182.2

About this gene

This gene has 5 transcripts (splice variants), 276 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081233.2	NCAM1-203	4502	854aa	ENSBTAP00000068304.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MGY6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000087263.2	NCAM1-205	4212	853aa	ENSBTAP00000069450.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MEK3	-
ENSBTAT00000086635.2	NCAM1-204	4161	836aa	ENSBTAP00000062944.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N1J8	-
ENSBTAT00000057334.4	NCAM1-201	2968	844aa	ENSBTAP00000049952.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MMJ2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000007501.7	NCAM1-202	2748	760aa	ENSBTAP00000007501.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N1W7	-

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Summary

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