Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATP2A2 ENSBTAG00000001398

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Description

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:VGNC Symbol;Acc:VGNC:26291]

Location

Primary_assembly 17: 54,211,210-54,268,849 forward strand.

ARS-UCD1.3:CM008184.2

About this gene

This gene has 7 transcripts (splice variants), 176 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000089161.1	ATP2A2-201	4309	1042aa	ENSBTAP00000083850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000001838.6	ATP2A2-202	4228	1015aa	ENSBTAP00000001838.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MPR3	-
ENSBTAT00000135774.1	ATP2A2-205	4201	1036aa	ENSBTAP00000092405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000078158.2	ATP2A2-203	4079	997aa	ENSBTAP00000066955.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M9U0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000090291.1	ATP2A2-206	4051	986aa	ENSBTAP00000101195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000079864.2	ATP2A2-204	3021	1006aa	ENSBTAP00000059747.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LWF3	-
ENSBTAT00000078723.2	ATP2A2-207	2862	953aa	ENSBTAP00000067481.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N8S4	-

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Summary

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