Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM1 ENSBTAG00000000816

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Description

PR/SET domain 1 [Source:VGNC Symbol;Acc:VGNC:33288]

Location

Primary_assembly 9: 43,843,910-43,877,120 reverse strand.

ARS-UCD1.3:CM008176.2

About this gene

This gene has 5 transcripts (splice variants), 211 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000128904.1	PRDM1-205	5026	855aa	ENSBTAP00000088495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000110057.1	PRDM1-204	5234	854aa	ENSBTAP00000077073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000086780.2	PRDM1-203	5123	828aa	ENSBTAP00000073571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ30	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000001081.7	PRDM1-202	4966	842aa	ENSBTAP00000001081.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ30	-
ENSBTAT00000105342.1	PRDM1-201	4721	694aa	ENSBTAP00000087213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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