dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs237887
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr3:8755356 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- G>A / G>C
- Variation Type
- SNV Single Nucleotide Variation
- Frequency
-
G=0.374022 (99000/264690, TOPMED)G=0.420601 (83734/199082, ALFA)A=0.42331 (11962/28258, 14KJPN) (+ 20 more)
- Clinical Significance
- Not Reported in ClinVar
- Gene : Consequence
- OXTR : Intron Variant
- Publications
- 36 citations
- Genomic View
- See rs on genome
ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.
Release Version: 20230706150541
| Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|
| Total | Global | 199176 | G=0.420613 | A=0.579387, C=0.000000 |
| European | Sub | 172822 | G=0.427434 | A=0.572566, C=0.000000 |
| African | Sub | 7120 | G=0.2803 | A=0.7197, C=0.0000 |
| African Others | Sub | 248 | G=0.218 | A=0.782, C=0.000 |
| African American | Sub | 6872 | G=0.2826 | A=0.7174, C=0.0000 |
| Asian | Sub | 648 | G=0.622 | A=0.378, C=0.000 |
| East Asian | Sub | 506 | G=0.583 | A=0.417, C=0.000 |
| Other Asian | Sub | 142 | G=0.761 | A=0.239, C=0.000 |
| Latin American 1 | Sub | 724 | G=0.413 | A=0.587, C=0.000 |
| Latin American 2 | Sub | 6324 | G=0.4010 | A=0.5990, C=0.0000 |
| South Asian | Sub | 4962 | G=0.3886 | A=0.6114, C=0.0000 |
| Other | Sub | 6576 | G=0.4173 | A=0.5827, C=0.0000 |
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| TopMed | Global | Study-wide | 264690 | G=0.374022 | A=0.625978 |
| Allele Frequency Aggregator | Total | Global | 199082 | G=0.420601 | A=0.579399, C=0.000000 |
| Allele Frequency Aggregator | European | Sub | 172746 | G=0.427414 | A=0.572586, C=0.000000 |
| Allele Frequency Aggregator | African | Sub | 7120 | G=0.2803 | A=0.7197, C=0.0000 |
| Allele Frequency Aggregator | Other | Sub | 6558 | G=0.4175 | A=0.5825, C=0.0000 |
| Allele Frequency Aggregator | Latin American 2 | Sub | 6324 | G=0.4010 | A=0.5990, C=0.0000 |
| Allele Frequency Aggregator | South Asian | Sub | 4962 | G=0.3886 | A=0.6114, C=0.0000 |
| Allele Frequency Aggregator | Latin American 1 | Sub | 724 | G=0.413 | A=0.587, C=0.000 |
| Allele Frequency Aggregator | Asian | Sub | 648 | G=0.622 | A=0.378, C=0.000 |
| 14KJPN | JAPANESE | Study-wide | 28258 | G=0.57669 | A=0.42331 |
| 8.3KJPN | JAPANESE | Study-wide | 16760 | G=0.57315 | A=0.42685 |
| 1000Genomes_30x | Global | Study-wide | 6404 | G=0.3963 | A=0.6037 |
| 1000Genomes_30x | African | Sub | 1786 | G=0.2436 | A=0.7564 |
| 1000Genomes_30x | Europe | Sub | 1266 | G=0.4550 | A=0.5450 |
| 1000Genomes_30x | South Asian | Sub | 1202 | G=0.3952 | A=0.6048 |
| 1000Genomes_30x | East Asian | Sub | 1170 | G=0.5838 | A=0.4162 |
| 1000Genomes_30x | American | Sub | 980 | G=0.377 | A=0.623 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.3998 | A=0.6002 |
| 1000Genomes | African | Sub | 1322 | G=0.2405 | A=0.7595 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.5734 | A=0.4266 |
| 1000Genomes | Europe | Sub | 1006 | G=0.4612 | A=0.5388 |
| 1000Genomes | South Asian | Sub | 978 | G=0.391 | A=0.609 |
| 1000Genomes | American | Sub | 694 | G=0.375 | A=0.625 |
| Genetic variation in the Estonian population | Estonian | Study-wide | 4480 | G=0.3900 | A=0.6100 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.4388 | A=0.5612 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.4339 | A=0.5661 |
| KOREAN population from KRGDB | KOREAN | Study-wide | 2930 | G=0.5911 | A=0.4089 |
| HGDP-CEPH-db Supplement 1 | Global | Study-wide | 2084 | G=0.4381 | A=0.5619 |
| HGDP-CEPH-db Supplement 1 | Est_Asia | Sub | 470 | G=0.551 | A=0.449 |
| HGDP-CEPH-db Supplement 1 | Central_South_Asia | Sub | 414 | G=0.372 | A=0.628 |
| HGDP-CEPH-db Supplement 1 | Middle_Est | Sub | 350 | G=0.531 | A=0.469 |
| HGDP-CEPH-db Supplement 1 | Europe | Sub | 320 | G=0.447 | A=0.553 |
| HGDP-CEPH-db Supplement 1 | Africa | Sub | 242 | G=0.240 | A=0.760 |
| HGDP-CEPH-db Supplement 1 | America | Sub | 216 | G=0.292 | A=0.708 |
| HGDP-CEPH-db Supplement 1 | Oceania | Sub | 72 | G=0.69 | A=0.31 |
| HapMap | Global | Study-wide | 1890 | G=0.4021 | A=0.5979 |
| HapMap | American | Sub | 768 | G=0.417 | A=0.583 |
| HapMap | African | Sub | 692 | G=0.290 | A=0.710 |
| HapMap | Asian | Sub | 254 | G=0.567 | A=0.433 |
| HapMap | Europe | Sub | 176 | G=0.540 | A=0.460 |
| Korean Genome Project | KOREAN | Study-wide | 1832 | G=0.5677 | A=0.4323 |
| Genome-wide autozygosity in Daghestan | Global | Study-wide | 1136 | G=0.4481 | A=0.5519 |
| Genome-wide autozygosity in Daghestan | Daghestan | Sub | 628 | G=0.425 | A=0.575 |
| Genome-wide autozygosity in Daghestan | Near_East | Sub | 144 | G=0.465 | A=0.535 |
| Genome-wide autozygosity in Daghestan | Central Asia | Sub | 122 | G=0.492 | A=0.508 |
| Genome-wide autozygosity in Daghestan | Europe | Sub | 108 | G=0.509 | A=0.491 |
| Genome-wide autozygosity in Daghestan | South Asian | Sub | 98 | G=0.43 | A=0.57 |
| Genome-wide autozygosity in Daghestan | Caucasus | Sub | 36 | G=0.50 | A=0.50 |
| Genome of the Netherlands Release 5 | Genome of the Netherlands | Study-wide | 998 | G=0.414 | A=0.586 |
| CNV burdens in cranial meningiomas | Global | Study-wide | 790 | G=0.541 | A=0.459 |
| CNV burdens in cranial meningiomas | CRM | Sub | 790 | G=0.541 | A=0.459 |
| Northern Sweden | ACPOP | Study-wide | 600 | G=0.433 | A=0.567 |
| SGDP_PRJ | Global | Study-wide | 446 | G=0.323 | A=0.677 |
| Qatari | Global | Study-wide | 216 | G=0.495 | A=0.505 |
| A Vietnamese Genetic Variation Database | Global | Study-wide | 216 | G=0.611 | A=0.389 |
| Ancient Sardinia genome-wide 1240k capture data generation and analysis | Global | Study-wide | 74 | G=0.51 | A=0.49 |
| Siberian | Global | Study-wide | 46 | G=0.22 | A=0.78 |
| The Danish reference pan genome | Danish | Study-wide | 40 | G=0.40 | A=0.60 |
Help
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
Genomic Placements
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 3 | NC_000003.12:g.8755356G>A |
| GRCh38.p14 chr 3 | NC_000003.12:g.8755356G>C |
| GRCh37.p13 chr 3 | NC_000003.11:g.8797042G>A |
| GRCh37.p13 chr 3 | NC_000003.11:g.8797042G>C |
| CAV3 RefSeqGene (LRG_329) | NG_008797.2:g.26547G>A |
| CAV3 RefSeqGene (LRG_329) | NG_008797.2:g.26547G>C |
Gene: OXTR, oxytocin receptor
(minus strand)
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| OXTR transcript variant 1 | NM_000916.4:c.923-2132C>T | N/A | Intron Variant |
| OXTR transcript variant 2 |
NM_001354653.2:c.923-2132… NM_001354653.2:c.923-2132C>T |
N/A | Intron Variant |
| OXTR transcript variant 3 |
NM_001354654.2:c.923-2132… NM_001354654.2:c.923-2132C>T |
N/A | Intron Variant |
| OXTR transcript variant 4 |
NM_001354655.2:c.923-2132… NM_001354655.2:c.923-2132C>T |
N/A | Intron Variant |
| OXTR transcript variant 5 |
NM_001354656.3:c.923-2132… NM_001354656.3:c.923-2132C>T |
N/A | Intron Variant |
| OXTR transcript variant X1 | XR_007095681.1:n. | N/A | Intron Variant |
Help
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
Not Reported in ClinVar
Help
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | G= | A | C |
|---|---|---|---|
| GRCh38.p14 chr 3 | NC_000003.12:g.8755356= | NC_000003.12:g.8755356G>A | NC_000003.12:g.8755356G>C |
| GRCh37.p13 chr 3 | NC_000003.11:g.8797042= | NC_000003.11:g.8797042G>A | NC_000003.11:g.8797042G>C |
| CAV3 RefSeqGene (LRG_329) | NG_008797.2:g.26547= | NG_008797.2:g.26547G>A | NG_008797.2:g.26547G>C |
| OXTR transcript variant 1 | NM_000916.3:c.923-2132= | NM_000916.3:c.923-2132C>T | NM_000916.3:c.923-2132C>G |
| OXTR transcript variant 1 | NM_000916.4:c.923-2132= | NM_000916.4:c.923-2132C>T | NM_000916.4:c.923-2132C>G |
| OXTR transcript variant 2 | NM_001354653.2:c.923-2132= | NM_001354653.2:c.923-2132C>T | NM_001354653.2:c.923-2132C>G |
| OXTR transcript variant 3 | NM_001354654.2:c.923-2132= | NM_001354654.2:c.923-2132C>T | NM_001354654.2:c.923-2132C>G |
| OXTR transcript variant 4 | NM_001354655.2:c.923-2132= | NM_001354655.2:c.923-2132C>T | NM_001354655.2:c.923-2132C>G |
| OXTR transcript variant 5 | NM_001354656.3:c.923-2132= | NM_001354656.3:c.923-2132C>T | NM_001354656.3:c.923-2132C>G |
Help
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
139 SubSNP,
25 Frequency
submissions
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | KWOK | ss306653 | Jul 12, 2000 (79) |
| 2 | KWOK | ss439093 | Jul 12, 2000 (85) |
| 3 | SC_JCM | ss604079 | Jul 16, 2000 (80) |
| 4 | KWOK | ss1014567 | Oct 04, 2000 (86) |
| 5 | KWOK | ss1055342 | Oct 04, 2000 (86) |
| 6 | KWOK | ss1652909 | Oct 18, 2000 (87) |
| 7 | TSC-CSHL | ss4065941 | Nov 05, 2001 (101) |
| 8 | WI_SSAHASNP | ss14308738 | Dec 05, 2003 (119) |
| 9 | CSHL-HAPMAP | ss16954547 | Feb 27, 2004 (120) |
| 10 | CSHL-HAPMAP | ss20160262 | Feb 27, 2004 (120) |
| 11 | PERLEGEN | ss23914323 | Sep 20, 2004 (123) |
| 12 | ABI | ss44473107 | Mar 14, 2006 (126) |
| 13 | ILLUMINA | ss66613228 | Dec 02, 2006 (127) |
| 14 | ILLUMINA | ss67250392 | Dec 02, 2006 (127) |
| 15 | ILLUMINA | ss67648020 | Dec 02, 2006 (127) |
| 16 | PERLEGEN | ss68852183 | May 18, 2007 (127) |
| 17 | ILLUMINA | ss70728727 | May 25, 2008 (130) |
| 18 | ILLUMINA | ss71297932 | May 18, 2007 (127) |
| 19 | ILLUMINA | ss75452139 | Dec 06, 2007 (129) |
| 20 | HGSV | ss77509686 | Dec 06, 2007 (129) |
| 21 | ILLUMINA | ss79132422 | Dec 15, 2007 (130) |
| 22 | HGSV | ss79944198 | Dec 15, 2007 (130) |
| 23 | HGSV | ss83044280 | Dec 15, 2007 (130) |
| 24 | KRIBB_YJKIM | ss83397827 | Dec 15, 2007 (130) |
| 25 | HGSV | ss85429063 | Dec 15, 2007 (130) |
| 26 | BCMHGSC_JDW | ss91992519 | Mar 24, 2008 (129) |
| 27 | HUMANGENOME_JCVI | ss95983125 | Feb 05, 2009 (130) |
| 28 | BGI | ss103897854 | Feb 13, 2009 (130) |
| 29 | 1000GENOMES | ss111225223 | Jan 25, 2009 (130) |
| 30 | 1000GENOMES | ss112052228 | Jan 25, 2009 (130) |
| 31 | ILLUMINA-UK | ss116967887 | Feb 14, 2009 (130) |
| 32 | ILLUMINA | ss122019959 | Dec 01, 2009 (131) |
| 33 | ENSEMBL | ss133252752 | Dec 01, 2009 (131) |
| 34 | ENSEMBL | ss138713603 | Dec 01, 2009 (131) |
| 35 | ILLUMINA | ss153908093 | Dec 01, 2009 (131) |
| 36 | ILLUMINA | ss159385954 | Dec 01, 2009 (131) |
| 37 | ILLUMINA | ss160541689 | Dec 01, 2009 (131) |
| 38 | COMPLETE_GENOMICS | ss161915026 | Jul 04, 2010 (132) |
| 39 | COMPLETE_GENOMICS | ss163085900 | Jul 04, 2010 (132) |
| 40 | COMPLETE_GENOMICS | ss166129245 | Jul 04, 2010 (132) |
| 41 | ILLUMINA | ss171228770 | Jul 04, 2010 (132) |
| 42 | ILLUMINA | ss173316530 | Jul 04, 2010 (132) |
| 43 | BUSHMAN | ss202109302 | Jul 04, 2010 (132) |
| 44 | BCM-HGSC-SUB | ss206037413 | Jul 04, 2010 (132) |
| 45 | 1000GENOMES | ss219970733 | Jul 14, 2010 (132) |
| 46 | 1000GENOMES | ss231700273 | Jul 14, 2010 (132) |
| 47 | 1000GENOMES | ss239135773 | Jul 15, 2010 (132) |
| 48 | BL | ss252921812 | May 09, 2011 (134) |
| 49 | GMI | ss277006549 | May 04, 2012 (137) |
| 50 | GMI | ss284591693 | Apr 25, 2013 (138) |
| 51 | PJP | ss292858683 | May 09, 2011 (134) |
| 52 | ILLUMINA | ss410922633 | Sep 17, 2011 (135) |
| 53 | ILLUMINA | ss480551095 | May 04, 2012 (137) |
| 54 | ILLUMINA | ss480565144 | May 04, 2012 (137) |
| 55 | ILLUMINA | ss481381186 | Sep 08, 2015 (146) |
| 56 | ILLUMINA | ss485071255 | May 04, 2012 (137) |
| 57 | ILLUMINA | ss537084141 | Sep 08, 2015 (146) |
| 58 | TISHKOFF | ss556413296 | Apr 25, 2013 (138) |
| 59 | SSMP | ss650078280 | Apr 25, 2013 (138) |
| 60 | ILLUMINA | ss778867310 | Sep 08, 2015 (146) |
| 61 | ILLUMINA | ss782981899 | Sep 08, 2015 (146) |
| 62 | ILLUMINA | ss783942908 | Sep 08, 2015 (146) |
| 63 | ILLUMINA | ss825462940 | Jul 19, 2016 (147) |
| 64 | ILLUMINA | ss832238449 | Sep 08, 2015 (146) |
| 65 | ILLUMINA | ss832897720 | Jul 13, 2019 (153) |
| 66 | ILLUMINA | ss834328170 | Sep 08, 2015 (146) |
| 67 | EVA-GONL | ss978252095 | Aug 21, 2014 (142) |
| 68 | JMKIDD_LAB | ss1070160676 | Aug 21, 2014 (142) |
| 69 | 1000GENOMES | ss1302724772 | Aug 21, 2014 (142) |
| 70 | HAMMER_LAB | ss1397329047 | Sep 08, 2015 (146) |
| 71 | DDI | ss1429324832 | Apr 01, 2015 (144) |
| 72 | EVA_GENOME_DK | ss1579837581 | Apr 01, 2015 (144) |
| 73 | EVA_DECODE | ss1587712195 | Apr 01, 2015 (144) |
| 74 | EVA_UK10K_ALSPAC | ss1606372921 | Apr 01, 2015 (144) |
| 75 | EVA_UK10K_TWINSUK | ss1649366954 | Apr 01, 2015 (144) |
| 76 | EVA_SVP | ss1712552146 | Apr 01, 2015 (144) |
| 77 | ILLUMINA | ss1752486612 | Sep 08, 2015 (146) |
| 78 | HAMMER_LAB | ss1798826698 | Sep 08, 2015 (146) |
| 79 | WEILL_CORNELL_DGM | ss1921503656 | Feb 12, 2016 (147) |
| 80 | GENOMED | ss1969318772 | Jul 19, 2016 (147) |
| 81 | JJLAB | ss2021304627 | Sep 14, 2016 (149) |
| 82 | USC_VALOUEV | ss2149371858 | Dec 20, 2016 (150) |
| 83 | HUMAN_LONGEVITY | ss2248922258 | Dec 20, 2016 (150) |
| 84 | SYSTEMSBIOZJU | ss2625152833 | Nov 08, 2017 (151) |
| 85 | ILLUMINA | ss2633908589 | Nov 08, 2017 (151) |
| 86 | GRF | ss2704730700 | Nov 08, 2017 (151) |
| 87 | GNOMAD | ss2789315774 | Nov 08, 2017 (151) |
| 88 | AFFY | ss2985246115 | Nov 08, 2017 (151) |
| 89 | AFFY | ss2985865349 | Nov 08, 2017 (151) |
| 90 | SWEGEN | ss2991798794 | Nov 08, 2017 (151) |
| 91 | BIOINF_KMB_FNS_UNIBA | ss3024415254 | Nov 08, 2017 (151) |
| 92 | CSHL | ss3344875951 | Nov 08, 2017 (151) |
| 93 | ILLUMINA | ss3625807520 | Oct 11, 2018 (152) |
| 94 | ILLUMINA | ss3628584986 | Oct 11, 2018 (152) |
| 95 | ILLUMINA | ss3631857422 | Oct 11, 2018 (152) |
| 96 | ILLUMINA | ss3633281140 | Oct 11, 2018 (152) |
| 97 | ILLUMINA | ss3633997561 | Oct 11, 2018 (152) |
| 98 | ILLUMINA | ss3634878991 | Oct 11, 2018 (152) |
| 99 | ILLUMINA | ss3635681779 | Oct 11, 2018 (152) |
| 100 | ILLUMINA | ss3636575232 | Oct 11, 2018 (152) |
| 101 | ILLUMINA | ss3637434076 | Oct 11, 2018 (152) |
| 102 | ILLUMINA | ss3638395758 | Oct 11, 2018 (152) |
| 103 | ILLUMINA | ss3639201671 | Oct 11, 2018 (152) |
| 104 | ILLUMINA | ss3639618285 | Oct 11, 2018 (152) |
| 105 | ILLUMINA | ss3640586294 | Oct 11, 2018 (152) |
| 106 | ILLUMINA | ss3643354224 | Oct 11, 2018 (152) |
| 107 | URBANLAB | ss3647336465 | Oct 11, 2018 (152) |
| 108 | ILLUMINA | ss3654014608 | Oct 11, 2018 (152) |
| 109 | EGCUT_WGS | ss3659698703 | Jul 13, 2019 (153) |
| 110 | EVA_DECODE | ss3708598104 | Jul 13, 2019 (153) |
| 111 | ACPOP | ss3729615686 | Jul 13, 2019 (153) |
| 112 | ILLUMINA | ss3745178802 | Jul 13, 2019 (153) |
| 113 | EVA | ss3759636108 | Jul 13, 2019 (153) |
| 114 | ILLUMINA | ss3772674607 | Jul 13, 2019 (153) |
| 115 | KHV_HUMAN_GENOMES | ss3802787891 | Jul 13, 2019 (153) |
| 116 | EVA | ss3827651659 | Apr 25, 2020 (154) |
| 117 | EVA | ss3837247592 | Apr 25, 2020 (154) |
| 118 | EVA | ss3842671345 | Apr 25, 2020 (154) |
| 119 | HGDP | ss3847697121 | Apr 25, 2020 (154) |
| 120 | SGDP_PRJ | ss3855186425 | Apr 25, 2020 (154) |
| 121 | KRGDB | ss3900953452 | Apr 25, 2020 (154) |
| 122 | KOGIC | ss3950623383 | Apr 25, 2020 (154) |
| 123 | EVA | ss3984502591 | Apr 26, 2021 (155) |
| 124 | EVA | ss3984971595 | Apr 26, 2021 (155) |
| 125 | TOPMED | ss4553566788 | Apr 26, 2021 (155) |
| 126 | TOMMO_GENOMICS | ss5157709734 | Apr 26, 2021 (155) |
| 127 | 1000G_HIGH_COVERAGE | ss5252980828 | Oct 13, 2022 (156) |
| 128 | EVA | ss5314831918 | Oct 13, 2022 (156) |
| 129 | EVA | ss5337766425 | Oct 13, 2022 (156) |
| 130 | HUGCELL_USP | ss5452489308 | Oct 13, 2022 (156) |
| 131 | 1000G_HIGH_COVERAGE | ss5530780469 | Oct 13, 2022 (156) |
| 132 | SANFORD_IMAGENETICS | ss5631504515 | Oct 13, 2022 (156) |
| 133 | TOMMO_GENOMICS | ss5688951170 | Oct 13, 2022 (156) |
| 134 | EVA | ss5799568957 | Oct 13, 2022 (156) |
| 135 | YY_MCH | ss5803464006 | Oct 13, 2022 (156) |
| 136 | EVA | ss5825319898 | Oct 13, 2022 (156) |
| 137 | EVA | ss5853482322 | Oct 13, 2022 (156) |
| 138 | EVA | ss5867551445 | Oct 13, 2022 (156) |
| 139 | EVA | ss5959762219 | Oct 13, 2022 (156) |
| 140 | 1000Genomes | NC_000003.11 - 8797042 | Oct 11, 2018 (152) |
| 141 | 1000Genomes_30x | NC_000003.12 - 8755356 | Oct 13, 2022 (156) |
| 142 | The Avon Longitudinal Study of Parents and Children | NC_000003.11 - 8797042 | Oct 11, 2018 (152) |
| 143 | Genome-wide autozygosity in Daghestan | NC_000003.10 - 8772042 | Apr 25, 2020 (154) |
| 144 | Genetic variation in the Estonian population | NC_000003.11 - 8797042 | Oct 11, 2018 (152) |
| 145 | The Danish reference pan genome | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 146 |
gnomAD - Genomes
Submission ignored due to conflicting rows: |
- | Apr 26, 2021 (155) |
| 147 |
gnomAD - Genomes
Submission ignored due to conflicting rows: |
- | Apr 26, 2021 (155) |
| 148 | Genome of the Netherlands Release 5 | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 149 | HGDP-CEPH-db Supplement 1 | NC_000003.10 - 8772042 | Apr 25, 2020 (154) |
| 150 | HapMap | NC_000003.12 - 8755356 | Apr 25, 2020 (154) |
| 151 | KOREAN population from KRGDB | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 152 | Korean Genome Project | NC_000003.12 - 8755356 | Apr 25, 2020 (154) |
| 153 | Northern Sweden | NC_000003.11 - 8797042 | Jul 13, 2019 (153) |
| 154 | Ancient Sardinia genome-wide 1240k capture data generation and analysis | NC_000003.11 - 8797042 | Apr 26, 2021 (155) |
| 155 | CNV burdens in cranial meningiomas | NC_000003.11 - 8797042 | Apr 26, 2021 (155) |
| 156 | Qatari | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 157 | SGDP_PRJ | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 158 | Siberian | NC_000003.11 - 8797042 | Apr 25, 2020 (154) |
| 159 | 8.3KJPN | NC_000003.11 - 8797042 | Apr 26, 2021 (155) |
| 160 | 14KJPN | NC_000003.12 - 8755356 | Oct 13, 2022 (156) |
| 161 | TopMed | NC_000003.12 - 8755356 | Apr 26, 2021 (155) |
| 162 | UK 10K study - Twins | NC_000003.11 - 8797042 | Oct 11, 2018 (152) |
| 163 | A Vietnamese Genetic Variation Database | NC_000003.11 - 8797042 | Jul 13, 2019 (153) |
| 164 | ALFA | NC_000003.12 - 8755356 | Apr 26, 2021 (155) |
Help
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
| Associated ID | History Updated (Build) |
|---|---|
| rs345111 | Sep 19, 2000 (85) |
| rs59616556 | May 25, 2008 (130) |
Added to this RefSNP Cluster:
| Submission IDs | Observation SPDI | Canonical SPDI | Source RSIDs |
|---|---|---|---|
| ss77509686, ss79944198, ss83044280, ss85429063, ss3639201671, ss3639618285 | NC_000003.9:8772041:G:A | NC_000003.12:8755355:G:A | (self) |
| 305161, 375013, ss91992519, ss111225223, ss112052228, ss116967887, ss161915026, ss163085900, ss166129245, ss202109302, ss206037413, ss252921812, ss277006549, ss284591693, ss292858683, ss480551095, ss825462940, ss1397329047, ss1587712195, ss1712552146, ss3643354224, ss3847697121 | NC_000003.10:8772041:G:A | NC_000003.12:8755355:G:A | (self) |
| 13866954, 7686003, 5436951, 6002520, 3375476, 8130846, 2900551, 197522, 51933, 3545586, 7203405, 1888212, 15679041, 7686003, 1673719, ss219970733, ss231700273, ss239135773, ss480565144, ss481381186, ss485071255, ss537084141, ss556413296, ss650078280, ss778867310, ss782981899, ss783942908, ss832238449, ss832897720, ss834328170, ss978252095, ss1070160676, ss1302724772, ss1429324832, ss1579837581, ss1606372921, ss1649366954, ss1752486612, ss1798826698, ss1921503656, ss1969318772, ss2021304627, ss2149371858, ss2625152833, ss2633908589, ss2704730700, ss2789315774, ss2985246115, ss2985865349, ss2991798794, ss3344875951, ss3625807520, ss3628584986, ss3631857422, ss3633281140, ss3633997561, ss3634878991, ss3635681779, ss3636575232, ss3637434076, ss3638395758, ss3640586294, ss3654014608, ss3659698703, ss3729615686, ss3745178802, ss3759636108, ss3772674607, ss3827651659, ss3837247592, ss3855186425, ss3900953452, ss3984502591, ss3984971595, ss5157709734, ss5314831918, ss5337766425, ss5631504515, ss5799568957, ss5825319898, ss5959762219 | NC_000003.11:8797041:G:A | NC_000003.12:8755355:G:A | (self) |
| 18306404, 2299042, 7001384, 22788274, 390944343, 2962754873, ss2248922258, ss3024415254, ss3647336465, ss3708598104, ss3802787891, ss3842671345, ss3950623383, ss4553566788, ss5252980828, ss5452489308, ss5530780469, ss5688951170, ss5803464006, ss5853482322, ss5867551445 | NC_000003.12:8755355:G:A | NC_000003.12:8755355:G:A | (self) |
| ss14308738, ss16954547, ss20160262 | NT_022517.16:8737041:G:A | NC_000003.12:8755355:G:A | (self) |
| ss306653, ss439093, ss604079, ss1014567, ss1055342, ss1652909, ss4065941, ss23914323, ss44473107, ss66613228, ss67250392, ss67648020, ss68852183, ss70728727, ss71297932, ss75452139, ss79132422, ss83397827, ss95983125, ss103897854, ss122019959, ss133252752, ss138713603, ss153908093, ss159385954, ss160541689, ss171228770, ss173316530, ss410922633 | NT_022517.18:8737041:G:A | NC_000003.12:8755355:G:A | (self) |
| 2962754873 | NC_000003.12:8755355:G:C | NC_000003.12:8755355:G:C | (self) |
Help
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
36
citations for rs237887
| PMID | Title | Author | Year | Journal |
|---|---|---|---|---|
| 17668382 | Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium. | Salonen JT et al. | 2007 | American journal of human genetics |
| 19461999 | The oxytocin receptor (OXTR) contributes to prosocial fund allocations in the dictator game and the social value orientations task. | Israel S et al. | 2009 | PloS one |
| 20196918 | Schizophrenia severity and clozapine treatment outcome association with oxytocinergic genes. | Souza RP et al. | 2010 | The international journal of neuropsychopharmacology |
| 20585395 | No association between oxytocin receptor (OXTR) gene polymorphisms and experimentally elicited social preferences. | Apicella CL et al. | 2010 | PloS one |
| 21484202 | Association of oxytocin receptor (OXTR) gene variants with multiple phenotype domains of autism spectrum disorder. | Campbell DB et al. | 2011 | Journal of neurodevelopmental disorders |
| 22015110 | Variation in the oxytocin receptor gene is associated with pair-bonding and social behavior. | Walum H et al. | 2012 | Biological psychiatry |
| 22357335 | The association between oxytocin receptor gene polymorphism (OXTR) and trait empathy. | Wu N et al. | 2012 | Journal of affective disorders |
| 22736892 | Oxytocin in schizophrenia: a review of evidence for its therapeutic effects. | Macdonald K et al. | 2012 | Acta neuropsychiatrica |
| 23168575 | Candidate gene linkage approach to identify DNA variants that predispose to preterm birth. | Bream EN et al. | 2013 | Pediatric research |
| 23284802 | Association between oxytocin receptor gene polymorphisms and self-rated 'empathic concern' in schizophrenia. | Montag C et al. | 2012 | PloS one |
| 23547247 | Variation in oxytocin receptor gene (OXTR) polymorphisms is associated with emotional and behavioral reactions to betrayal. | Tabak BA et al. | 2014 | Social cognitive and affective neuroscience |
| 24367110 | Common polymorphism in the oxytocin receptor gene (OXTR) is associated with human social recognition skills. | Skuse DH et al. | 2014 | Proceedings of the National Academy of Sciences of the United States of America |
| 25009457 | Social bonding: regulation by neuropeptides. | Lieberwirth C et al. | 2014 | Frontiers in neuroscience |
| 25092245 | The oxytocin receptor gene (OXTR) is associated with autism spectrum disorder: a meta-analysis. | LoParo D et al. | 2015 | Molecular psychiatry |
| 25309987 | Clock gene modulates roles of OXTR and AVPR1b genes in prosociality. | Ci H et al. | 2014 | PloS one |
| 26322220 | A comprehensive meta-analysis of common genetic variants in autism spectrum conditions. | Warrier V et al. | 2015 | Molecular autism |
| 26599592 | Lack of Association between Oxytocin Receptor (OXTR) Gene Polymorphisms and Alexithymia: Evidence from Patients with Obsessive-Compulsive Disorder. | Koh MJ et al. | 2015 | PloS one |
| 26713079 | Is Oxytocin Application for Autism Spectrum Disorder Evidence-Based? | Lee SY et al. | 2015 | Experimental neurobiology |
| 26858594 | Oxytocin and Vasopressin Receptor Gene Polymorphisms: Role in Social and Psychiatric Traits. | Aspé-Sánchez M et al. | 2015 | Frontiers in neuroscience |
| 26869977 | The Adapting Mind in the Genomic Era. | Fieder M et al. | 2016 | Frontiers in psychology |
| 27071789 | The Potential of Nasal Oxytocin Administration for Remediation of Autism Spectrum Disorders. | Okamoto Y et al. | 2016 | CNS & neurological disorders drug targets |
| 27458336 | Genetic Syndromes, Maternal Diseases and Antenatal Factors Associated with Autism Spectrum Disorders (ASD). | Ornoy A et al. | 2016 | Frontiers in neuroscience |
| 27467763 | Association of a Common Oxytocin Receptor Gene Polymorphism with Self-Reported 'Empathic Concern' in a Large Population of Healthy Volunteers. | Huetter FK et al. | 2016 | PloS one |
| 27713694 | Variation in the Oxytocin Receptor Gene Is Associated with Face Recognition and its Neural Correlates. | Westberg L et al. | 2016 | Frontiers in behavioral neuroscience |
| 27837182 | The Oxytocin Receptor Gene ( OXTR) and Face Recognition. | Verhallen RJ et al. | 2017 | Psychological science |
| 27920663 | ASD and Genetic Associations with Receptors for Oxytocin and Vasopressin-AVPR1A, AVPR1B, and OXTR. | Francis SM et al. | 2016 | Frontiers in neuroscience |
| 28912494 | Oxytocin Receptor Polymorphisms are Differentially Associated with Social Abilities across Neurodevelopmental Disorders. | Baribeau DA et al. | 2017 | Scientific reports |
| 28915380 | Oxytocin receptor gene polymorphisms exert a modulating effect on the onset age in patients with obsessive-compulsive disorder. | Kang JI et al. | 2017 | Psychoneuroendocrinology |
| 29851255 | Variations in the oxytocin receptor gene and prosocial behavior: moderating effects of situational factors. | Wu N et al. | 2018 | Integrative zoology |
| 30093869 | Biological Predictors of Clozapine Response: A Systematic Review. | Samanaite R et al. | 2018 | Frontiers in psychiatry |
| 30311451 | Oxytocin receptor gene variants are associated with emotion recognition and resilience, but not with false-belief reasoning performance in healthy young Korean volunteers. | Kim HW et al. | 2019 | CNS neuroscience & therapeutics |
| 31025834 | Cumulative Risk of the Oxytocin Receptor Gene Interacts with Prenatal Exposure to Oxytocin Receptor Antagonist to Predict Children's Social Communication Development. | Friedlander E et al. | 2019 | Autism research |
| 31415827 | Oxytocin modulation of self-referential processing is partly replicable and sensitive to oxytocin receptor genotype. | Zhao W et al. | 2020 | Progress in neuro-psychopharmacology & biological psychiatry |
| 32060678 | The Association of Oxytocin Receptor Gene (OXTR) Polymorphisms with Antisocial Behavior: A Meta-analysis. | Poore HE et al. | 2020 | Behavior genetics |
| 32757697 | Further evidence for the association of GAL, GALR1 and NPY1R variants with opioid dependence. | Randesi M et al. | 2020 | Pharmacogenomics |
| 34144447 | Gene-environment interaction: Oxytocin receptor (OXTR) polymorphisms and parenting style as potential predictors for depressive symptoms. | Keijser R et al. | 2021 | Psychiatry research |
Help
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genome context:
Select flank length:
Genomic regions, transcripts, and products
Top▲
Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.