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K - Transcription

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COG
definitions
Organims Proteins Median Protein
Length
Genes
212 1,309 272,365 235.0 176
Organism Protein COG Cat Annotation
1300 1377 COG0085 K DNA-directed RNA polymerase, beta subunit/140 kD subunit
1298 1455 COG0086 K DNA-directed RNA polymerase, beta' subunit/160 kD subunit
1289 1330 COG0195 K Transcription antitermination factor NusA, contains S1 and KH domains
1304 1336 COG0202 K DNA-directed RNA polymerase, alpha subunit/40 kD subunit
1154 1253 COG0217 J K Transcriptional and/or translational regulatory protein YebC/TACO1
1299 1643 COG0250 K Transcription termination/antitermination protein NusG
517 667 COG0271 K T DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation
1133 1849 COG0317 K T (p)ppGpp synthase/hydrolase, HD superfamily
71 77 COG0454 K R N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)
856 1713 COG0553 K L Superfamily II DNA or RNA helicase, SNF2 family
1035 1273 COG0557 K Exoribonuclease R
1183 2890 COG0568 K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
1170 1220 COG0571 K dsRNA-specific ribonuclease
1068 21908 COG0583 K DNA-binding transcriptional regulator, LysR family
1167 6304 COG0640 K DNA-binding transcriptional regulator, ArsR family
1021 1095 COG0718 K DNA-binding nucleoid-associated protein YbaB/EfbC
1181 15210 COG0745 K T DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain
1235 1418 COG0750 K O Membrane-associated protease RseP, regulator of RpoE activity
1176 1641 COG0781 K Transcription antitermination protein NusB
1121 2031 COG0782 K Transcription elongation factor, GreA/GreB family
1070 5757 COG0789 K DNA-binding transcriptional regulator, MerR family
1129 1175 COG0816 J K L YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor
377 540 COG0864 K Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain
821 1608 COG1061 K L Superfamily II DNA or RNA helicase
122 122 COG1095 K DNA-directed RNA polymerase, subunit E'/Rpb7
1061 1121 COG1158 K Transcription termination factor Rho
842 2890 COG1167 K E DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain
655 1225 COG1191 K DNA-directed RNA polymerase specialized sigma subunit
1115 1135 COG1197 K L Transcription-repair coupling factor (superfamily II helicase)
122 190 COG1221 K T Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
37 37 COG1224 K DNA helicase TIP49, TBP-interacting protein
1071 3439 COG1278 K Cold shock protein, CspA family
129 132 COG1308 K Transcription factor homologous to NACalpha-BTF3
1157 18838 COG1309 K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
50 58 COG1318 K Predicted transcriptional regulator
726 1167 COG1321 K Mn-dependent transcriptional regulator MntR, DtxR family
954 973 COG1327 K Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains
465 505 COG1329 K RNA polymerase-interacting regulator, CarD/CdnL/TRCF family
713 2368 COG1349 K G DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family
54 60 COG1356 K Transcriptional regulator
234 583 COG1378 K Sugar-specific transcriptional regulator TrmB
912 972 COG1386 K Chromosome segregation and condensation protein ScpB
121 125 COG1395 K Predicted transcriptional regulator
1082 8492 COG1396 K Transcriptional regulator, contains XRE-family HTH domain
123 503 COG1405 K Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB
709 3804 COG1414 K DNA-binding transcriptional regulator, IclR family
793 793 COG1420 K Transcriptional regulator of heat shock response
445 502 COG1438 K Arginine repressor
118 118 COG1460 K DNA-directed RNA polymerase, subunit F
719 1806 COG1476 K DNA-binding transcriptional regulator, XRE-family HTH domain
362 360 COG1481 K DNA-binding transcriptional regulator WhiA, involved in cell division
78 81 COG1497 K Predicted transcriptional regulator MJ0558, contains a CRP-type HTH domain
763 832 COG1508 K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
304 414 COG1510 K DNA-binding transcriptional regulator GbsR, MarR family
1015 5581 COG1522 K DNA-binding transcriptional regulator, Lrp family
76 126 COG1581 K DNA/RNA-binding protein AlbA/Ssh10b
126 199 COG1594 K DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS
1036 12319 COG1595 K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
780 7629 COG1609 K DNA-binding transcriptional regulator, LacI/PurR family
121 120 COG1644 K DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
506 536 COG1654 K Biotin operon repressor
107 109 COG1675 K Transcription initiation factor IIE, alpha subunit
667 677 COG1678 K Putative transcriptional regulator, AlgH/UPF0301 family
46 67 COG1693 K Repressor of nif and glnA expression
801 2800 COG1695 K DNA-binding transcriptional regulator, PadR family
118 118 COG1709 K Predicted transcriptional regulator,contains XRE-type HTH domain
514 1057 COG1725 K DNA-binding transcriptional regulator YhcF, GntR family
833 3023 COG1733 K DNA-binding transcriptional regulator, HxlR family
903 1541 COG1734 K RNA polymerase-binding transcription factor DksA
545 1679 COG1737 K DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
1068 1058 COG1758 K DNA-directed RNA polymerase, subunit K/omega
122 122 COG1761 K DNA-directed RNA polymerase, subunit L/RPAC2
138 206 COG1777 K Predicted transcriptional regulator, ArsR family
714 4062 COG1802 K DNA-binding transcriptional regulator, GntR family
124 137 COG1827 K H Transcriptional regulator of NAD metabolism, contains HTH and 3H domains
544 747 COG1842 K T Phage shock protein A
1122 9345 COG1846 K DNA-binding transcriptional regulator, MarR family
624 1020 COG1937 K DNA-binding transcriptional regulator, FrmR family
976 3554 COG1940 K G Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain
124 155 COG1954 K Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
116 209 COG1958 K Small nuclear ribonucleoprotein (snRNP) homolog
1012 2474 COG1959 K DNA-binding transcriptional regulator, IscR family
985 1628 COG1974 K T SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)
512 805 COG1983 K T Phage shock protein PspC (stress-responsive transcriptional regulator)
179 188 COG1996 K DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger
427 840 COG2002 K V Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module
461 585 COG2005 K DNA-binding transcriptional regulator ModE (molybdenum-dependent)
121 121 COG2012 K DNA-directed RNA polymerase, subunit H, RpoH/RPB5
186 221 COG2088 K D DNA- and RNA-binding protein SpoVG, cell septation regulator
131 136 COG2093 K RNA polymerase subunit RPABC4/transcription elongation factor Spt4
122 193 COG2101 K TATA-box binding protein (TBP), component of TFIID and TFIIIB
754 764 COG2183 K Transcriptional accessory protein Tex/SPT6
666 2581 COG2186 K DNA-binding transcriptional regulator, FadR family
739 2685 COG2188 K DNA-binding transcriptional regulator, GntR family
1052 10240 COG2197 K T DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
951 12177 COG2207 K AraC-type DNA-binding domain and AraC-containing proteins
586 2063 COG2208 K T Phosphoserine phosphatase RsbU, regulator of sigma subunit
113 138 COG2214 K Curved DNA-binding protein CbpA, contains a DnaJ-like domain
417 486 COG2315 K Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family
332 379 COG2344 K NADH/NAD ratio-sensing transcriptional regulator Rex
346 546 COG2345 K Predicted transcriptional regulator, ArsR family
830 2127 COG2378 K Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
373 730 COG2390 K DNA-binding transcriptional regulator LsrR, DeoR family
280 1020 COG2508 K DNA-binding transcriptional regulator, PucR/PutR family
123 189 COG2522 K Predicted transcriptional regulator, contains HTH domain
636 1168 COG2524 K Predicted transcriptional regulator, contains C-terminal CBS domains
143 160 COG2732 K Barstar, RNAse (barnase) inhibitor
195 197 COG2739 K Predicted DNA-binding protein YlxM, UPF0122 family
310 324 COG2747 K N Negative regulator of flagellin synthesis (anti-sigma28 factor)
529 1488 COG2771 K DNA-binding transcriptional regulator, CsgD family
414 810 COG2865 K Predicted transcriptional regulator, contains HTH domain
328 306 COG2901 K DNA-binding protein Fis (factor for inversion stimulation)
398 949 COG2909 K ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT
237 429 COG2916 K DNA-binding protein H-NS
407 708 COG2944 K DNA-binding transcriptional regulator YiaG, XRE-type HTH domain
214 283 COG2964 K Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
91 90 COG2973 K Trp operon repressor
103 98 COG3060 K E Transcriptional regulator MetJ (met regulon)
259 278 COG3070 K Transcriptional regulator of competence genes, TfoX/Sxy family
111 111 COG3160 K Regulator of sigma D
678 1290 COG3177 K Fic family protein
184 390 COG3226 K DNA-binding transcriptional regulator YbjK
704 2799 COG3279 K T DNA-binding response regulator, LytR/AlgR family
118 127 COG3283 K E Transcriptional regulator TyrR of aromatic amino acids metabolism
350 645 COG3284 K Transcriptional regulator DhaR of acetoin/glycerol metabolism
540 1076 COG3311 K X DNA-binding transcriptional regulator AlpA
188 255 COG3327 K DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation)
95 95 COG3343 K DNA-directed RNA polymerase, delta subunit
99 255 COG3355 K Predicted transcriptional regulator
84 84 COG3357 K Predicted transcriptional regulator, contains HTH and Zn-ribbon domains
12 16 COG3373 K Predicted transcriptional regulator, contains HTH domain
68 77 COG3388 K Predicted transcriptional regulator
70 173 COG3398 K Predicted transcriptional regulator, contains two HTH domains
107 218 COG3423 K Predicted transcriptional regulator, lambda repressor-like DNA-binding domain
62 210 COG3432 K Predicted transcriptional regulator
484 1070 COG3604 K T FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains
366 687 COG3609 K Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain
657 1019 COG3620 K Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)
272 1258 COG3629 K DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain
435 734 COG3655 K DNA-binding transcriptional regulator, XRE family
440 918 COG3682 K Transcriptional regulator, CopY/TcrY family
476 500 COG3695 K Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain
658 2883 COG3706 K T Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain
516 865 COG3707 K T Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains
310 472 COG3708 K Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain
264 764 COG3710 K DNA-binding winged helix-turn-helix (wHTH) domain
205 701 COG3711 K Transcriptional antiterminator
65 72 COG3722 K DNA-binding transcriptional regulator, MltR family
156 156 COG3820 K Cell cycle regulator TrcR, DUF1013 family
572 1801 COG3829 K T RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
134 215 COG3831 K WGR domain, predicted DNA-binding domain in MolR
273 457 COG3835 K T Sugar diacid utilization regulator CdaR
120 135 COG3877 K Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family
23 24 COG3888 K Predicted transcriptional regulator
97 118 COG3901 K Transcriptional regulator NosR of nitric oxide reductase
172 227 COG3905 K Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain
64 122 COG3933 K Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains
146 200 COG3947 K T Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains
27 27 COG4008 K Predicted metal-binding transcription factor, methanogenesis marker domain 9
250 302 COG4109 K Predicted transcriptional regulator containing CBS domains
123 152 COG4189 K Predicted transcriptional regulator, ArsR family
106 175 COG4190 K Predicted transcriptional regulator, contains HTH domain
88 112 COG4197 K DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily
34 36 COG4344 K Predicted transciptional regulator, contains HTH domain
149 149 COG4463 K Transcriptional regulator CtsR
135 145 COG4465 K GTP-sensing pleiotropic transcriptional regulator CodY
61 103 COG4512 K T Accessory gene regulator protein AgrB
82 133 COG4533 K DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain
407 664 COG4565 K T DNA-binding response regulator DpiB of citrate/malate metabolism
364 1003 COG4566 K T DNA-binding response regulator, FixJ family, consists of REC and HTH domains
315 409 COG4567 K T DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains
100 99 COG4568 K Transcriptional antiterminator Rof (Rho-off)
116 127 COG4578 K DNA-binding transcriptional regulator of glucitol operon
82 85 COG4650 K T Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain
32 66 COG4738 K Predicted transcriptional regulator
83 352 COG4742 K Predicted transcriptional regulator, contains HTH domain
523 1370 COG4753 K T Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains
100 101 COG4776 K Exoribonuclease II
29 30 COG4800 K Predicted transcriptional regulator with an HTH domain
31 31 COG4860 K Predicted DNA-binding transcriptional regulator, ArsR family
94 120 COG4862 K T N Negative regulator MecA of genetic competence, sporulation and motility
36 45 COG4871 K Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding domain
311 739 COG4886 K Leucine-rich repeat (LRR) protein
28 28 COG4888 K Transcription elongation factor Elf1, contains Zn-ribbon domain
39 60 COG4903 K Competence transcription factor ComK
78 82 COG4933 K Predicted transcriptional regulator, contains an HTH and PUA-like domains
263 599 COG4941 K Predicted RNA polymerase sigma factor, contains C-terminal TPR domain
129 319 COG4957 K Predicted transcriptional regulator
664 2549 COG4977 K Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain
7 8 COG5108 K Mitochondrial DNA-directed RNA polymerase
4 4 COG5164 K Transcription elongation factor SPT5
15 16 COG5190 K TFIIF-interacting CTD phosphatase, includes NLI-interacting factor
65 90 COG5304 K Predicted DNA binding protein, CopG/RHH family
64 101 COG5419 K Hexameric transcriptional regulator RovC, contains DUF2285 domain
110 121 COG5450 K Transcription regulator of the Arc/MetJ class
61 61 COG5503 K V DNA-dependent RNA polymerase auxiliary subunit epsilon
62 84 COG5566 K X Transcriptional regulator, middle operon regulator (Mor) family
17 19 COG5625 K Predicted DNA-binding transcriptional regulator, contains HTH domain
73 79 COG5631 K Predicted transcription regulator, contains HTH domain, MarR family
301 433 COG5662 K Transmembrane transcriptional regulator RsiW (anti-sigma-W factor)
6 6 COG5665 K CCR4-NOT transcriptional regulation complex, NOT5 subunit
107 106 COG5811 K D Sporulation sigma factor SigE (mother cell-specific, SpoIIGB)
101 102 COG5812 K D Sporulation sigma factor SigF (forespore-specific, SpoIIAC)
108 108 COG5813 K D Sporulation sigma factor SigG (forespore-specific, SpoIIIG)
102 107 COG5814 K D Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB)
107 107 COG5818 K D O Stage II sporulation protein SpoIIGA (protease, processing of pro-sigma-E to active sigma-E)
107 111 COG5830 K D Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes
108 117 COG5845 K D Stage V sporulation protein SpoVT, regulator of stationary/sporulation gene expression
36 70 COG5850 K D Prespore-specific transcriptional regulator RsfA
43 43 COG5865 K D Forespore-specific anti-sigma-G factor CsfB/Gin
12 12 COG5870 K D Uncharacterized sporulation protein YbaK, contains DUF2521 domain (not related to E. coli deacylase YbaK, COG2606)
69 73 COG5905 K D Spore transcriptional regulator GerE (stand-alone HTH domain)