K - Transcription
Stats
COG definitions |
Organims | Proteins | Median Protein Length |
Genes |
---|---|---|---|---|
212 | 1,309 | 272,365 | 235.0 | 176 |
Organism | Protein | COG | Cat | Annotation |
---|---|---|---|---|
1300 | 1377 | COG0085 | K | DNA-directed RNA polymerase, beta subunit/140 kD subunit |
1298 | 1455 | COG0086 | K | DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
1289 | 1330 | COG0195 | K | Transcription antitermination factor NusA, contains S1 and KH domains |
1304 | 1336 | COG0202 | K | DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
1154 | 1253 | COG0217 | J K | Transcriptional and/or translational regulatory protein YebC/TACO1 |
1299 | 1643 | COG0250 | K | Transcription termination/antitermination protein NusG |
517 | 667 | COG0271 | K T | DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation |
1133 | 1849 | COG0317 | K T | (p)ppGpp synthase/hydrolase, HD superfamily |
71 | 77 | COG0454 | K R | N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) |
856 | 1713 | COG0553 | K L | Superfamily II DNA or RNA helicase, SNF2 family |
1035 | 1273 | COG0557 | K | Exoribonuclease R |
1183 | 2890 | COG0568 | K | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
1170 | 1220 | COG0571 | K | dsRNA-specific ribonuclease |
1068 | 21908 | COG0583 | K | DNA-binding transcriptional regulator, LysR family |
1167 | 6304 | COG0640 | K | DNA-binding transcriptional regulator, ArsR family |
1021 | 1095 | COG0718 | K | DNA-binding nucleoid-associated protein YbaB/EfbC |
1181 | 15210 | COG0745 | K T | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain |
1235 | 1418 | COG0750 | K O | Membrane-associated protease RseP, regulator of RpoE activity |
1176 | 1641 | COG0781 | K | Transcription antitermination protein NusB |
1121 | 2031 | COG0782 | K | Transcription elongation factor, GreA/GreB family |
1070 | 5757 | COG0789 | K | DNA-binding transcriptional regulator, MerR family |
1129 | 1175 | COG0816 | J K L | YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor |
377 | 540 | COG0864 | K | Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain |
821 | 1608 | COG1061 | K L | Superfamily II DNA or RNA helicase |
122 | 122 | COG1095 | K | DNA-directed RNA polymerase, subunit E'/Rpb7 |
1061 | 1121 | COG1158 | K | Transcription termination factor Rho |
842 | 2890 | COG1167 | K E | DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain |
655 | 1225 | COG1191 | K | DNA-directed RNA polymerase specialized sigma subunit |
1115 | 1135 | COG1197 | K L | Transcription-repair coupling factor (superfamily II helicase) |
122 | 190 | COG1221 | K T | Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
37 | 37 | COG1224 | K | DNA helicase TIP49, TBP-interacting protein |
1071 | 3439 | COG1278 | K | Cold shock protein, CspA family |
129 | 132 | COG1308 | K | Transcription factor homologous to NACalpha-BTF3 |
1157 | 18838 | COG1309 | K | DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA |
50 | 58 | COG1318 | K | Predicted transcriptional regulator |
726 | 1167 | COG1321 | K | Mn-dependent transcriptional regulator MntR, DtxR family |
954 | 973 | COG1327 | K | Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains |
465 | 505 | COG1329 | K | RNA polymerase-interacting regulator, CarD/CdnL/TRCF family |
713 | 2368 | COG1349 | K G | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family |
54 | 60 | COG1356 | K | Transcriptional regulator |
234 | 583 | COG1378 | K | Sugar-specific transcriptional regulator TrmB |
912 | 972 | COG1386 | K | Chromosome segregation and condensation protein ScpB |
121 | 125 | COG1395 | K | Predicted transcriptional regulator |
1082 | 8492 | COG1396 | K | Transcriptional regulator, contains XRE-family HTH domain |
123 | 503 | COG1405 | K | Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB |
709 | 3804 | COG1414 | K | DNA-binding transcriptional regulator, IclR family |
793 | 793 | COG1420 | K | Transcriptional regulator of heat shock response |
445 | 502 | COG1438 | K | Arginine repressor |
118 | 118 | COG1460 | K | DNA-directed RNA polymerase, subunit F |
719 | 1806 | COG1476 | K | DNA-binding transcriptional regulator, XRE-family HTH domain |
362 | 360 | COG1481 | K | DNA-binding transcriptional regulator WhiA, involved in cell division |
78 | 81 | COG1497 | K | Predicted transcriptional regulator MJ0558, contains a CRP-type HTH domain |
763 | 832 | COG1508 | K | DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
304 | 414 | COG1510 | K | DNA-binding transcriptional regulator GbsR, MarR family |
1015 | 5581 | COG1522 | K | DNA-binding transcriptional regulator, Lrp family |
76 | 126 | COG1581 | K | DNA/RNA-binding protein AlbA/Ssh10b |
126 | 199 | COG1594 | K | DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS |
1036 | 12319 | COG1595 | K | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family |
780 | 7629 | COG1609 | K | DNA-binding transcriptional regulator, LacI/PurR family |
121 | 120 | COG1644 | K | DNA-directed RNA polymerase, subunit N (RpoN/RPB10) |
506 | 536 | COG1654 | K | Biotin operon repressor |
107 | 109 | COG1675 | K | Transcription initiation factor IIE, alpha subunit |
667 | 677 | COG1678 | K | Putative transcriptional regulator, AlgH/UPF0301 family |
46 | 67 | COG1693 | K | Repressor of nif and glnA expression |
801 | 2800 | COG1695 | K | DNA-binding transcriptional regulator, PadR family |
118 | 118 | COG1709 | K | Predicted transcriptional regulator,contains XRE-type HTH domain |
514 | 1057 | COG1725 | K | DNA-binding transcriptional regulator YhcF, GntR family |
833 | 3023 | COG1733 | K | DNA-binding transcriptional regulator, HxlR family |
903 | 1541 | COG1734 | K | RNA polymerase-binding transcription factor DksA |
545 | 1679 | COG1737 | K | DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains |
1068 | 1058 | COG1758 | K | DNA-directed RNA polymerase, subunit K/omega |
122 | 122 | COG1761 | K | DNA-directed RNA polymerase, subunit L/RPAC2 |
138 | 206 | COG1777 | K | Predicted transcriptional regulator, ArsR family |
714 | 4062 | COG1802 | K | DNA-binding transcriptional regulator, GntR family |
124 | 137 | COG1827 | K H | Transcriptional regulator of NAD metabolism, contains HTH and 3H domains |
544 | 747 | COG1842 | K T | Phage shock protein A |
1122 | 9345 | COG1846 | K | DNA-binding transcriptional regulator, MarR family |
624 | 1020 | COG1937 | K | DNA-binding transcriptional regulator, FrmR family |
976 | 3554 | COG1940 | K G | Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain |
124 | 155 | COG1954 | K | Glycerol-3-phosphate responsive antiterminator (mRNA-binding) |
116 | 209 | COG1958 | K | Small nuclear ribonucleoprotein (snRNP) homolog |
1012 | 2474 | COG1959 | K | DNA-binding transcriptional regulator, IscR family |
985 | 1628 | COG1974 | K T | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) |
512 | 805 | COG1983 | K T | Phage shock protein PspC (stress-responsive transcriptional regulator) |
179 | 188 | COG1996 | K | DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger |
427 | 840 | COG2002 | K V | Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module |
461 | 585 | COG2005 | K | DNA-binding transcriptional regulator ModE (molybdenum-dependent) |
121 | 121 | COG2012 | K | DNA-directed RNA polymerase, subunit H, RpoH/RPB5 |
186 | 221 | COG2088 | K D | DNA- and RNA-binding protein SpoVG, cell septation regulator |
131 | 136 | COG2093 | K | RNA polymerase subunit RPABC4/transcription elongation factor Spt4 |
122 | 193 | COG2101 | K | TATA-box binding protein (TBP), component of TFIID and TFIIIB |
754 | 764 | COG2183 | K | Transcriptional accessory protein Tex/SPT6 |
666 | 2581 | COG2186 | K | DNA-binding transcriptional regulator, FadR family |
739 | 2685 | COG2188 | K | DNA-binding transcriptional regulator, GntR family |
1052 | 10240 | COG2197 | K T | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains |
951 | 12177 | COG2207 | K | AraC-type DNA-binding domain and AraC-containing proteins |
586 | 2063 | COG2208 | K T | Phosphoserine phosphatase RsbU, regulator of sigma subunit |
113 | 138 | COG2214 | K | Curved DNA-binding protein CbpA, contains a DnaJ-like domain |
417 | 486 | COG2315 | K | Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family |
332 | 379 | COG2344 | K | NADH/NAD ratio-sensing transcriptional regulator Rex |
346 | 546 | COG2345 | K | Predicted transcriptional regulator, ArsR family |
830 | 2127 | COG2378 | K | Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
373 | 730 | COG2390 | K | DNA-binding transcriptional regulator LsrR, DeoR family |
280 | 1020 | COG2508 | K | DNA-binding transcriptional regulator, PucR/PutR family |
123 | 189 | COG2522 | K | Predicted transcriptional regulator, contains HTH domain |
636 | 1168 | COG2524 | K | Predicted transcriptional regulator, contains C-terminal CBS domains |
143 | 160 | COG2732 | K | Barstar, RNAse (barnase) inhibitor |
195 | 197 | COG2739 | K | Predicted DNA-binding protein YlxM, UPF0122 family |
310 | 324 | COG2747 | K N | Negative regulator of flagellin synthesis (anti-sigma28 factor) |
529 | 1488 | COG2771 | K | DNA-binding transcriptional regulator, CsgD family |
414 | 810 | COG2865 | K | Predicted transcriptional regulator, contains HTH domain |
328 | 306 | COG2901 | K | DNA-binding protein Fis (factor for inversion stimulation) |
398 | 949 | COG2909 | K | ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT |
237 | 429 | COG2916 | K | DNA-binding protein H-NS |
407 | 708 | COG2944 | K | DNA-binding transcriptional regulator YiaG, XRE-type HTH domain |
214 | 283 | COG2964 | K | Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains |
91 | 90 | COG2973 | K | Trp operon repressor |
103 | 98 | COG3060 | K E | Transcriptional regulator MetJ (met regulon) |
259 | 278 | COG3070 | K | Transcriptional regulator of competence genes, TfoX/Sxy family |
111 | 111 | COG3160 | K | Regulator of sigma D |
678 | 1290 | COG3177 | K | Fic family protein |
184 | 390 | COG3226 | K | DNA-binding transcriptional regulator YbjK |
704 | 2799 | COG3279 | K T | DNA-binding response regulator, LytR/AlgR family |
118 | 127 | COG3283 | K E | Transcriptional regulator TyrR of aromatic amino acids metabolism |
350 | 645 | COG3284 | K | Transcriptional regulator DhaR of acetoin/glycerol metabolism |
540 | 1076 | COG3311 | K X | DNA-binding transcriptional regulator AlpA |
188 | 255 | COG3327 | K | DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation) |
95 | 95 | COG3343 | K | DNA-directed RNA polymerase, delta subunit |
99 | 255 | COG3355 | K | Predicted transcriptional regulator |
84 | 84 | COG3357 | K | Predicted transcriptional regulator, contains HTH and Zn-ribbon domains |
12 | 16 | COG3373 | K | Predicted transcriptional regulator, contains HTH domain |
68 | 77 | COG3388 | K | Predicted transcriptional regulator |
70 | 173 | COG3398 | K | Predicted transcriptional regulator, contains two HTH domains |
107 | 218 | COG3423 | K | Predicted transcriptional regulator, lambda repressor-like DNA-binding domain |
62 | 210 | COG3432 | K | Predicted transcriptional regulator |
484 | 1070 | COG3604 | K T | FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains |
366 | 687 | COG3609 | K | Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain |
657 | 1019 | COG3620 | K | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) |
272 | 1258 | COG3629 | K | DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain |
435 | 734 | COG3655 | K | DNA-binding transcriptional regulator, XRE family |
440 | 918 | COG3682 | K | Transcriptional regulator, CopY/TcrY family |
476 | 500 | COG3695 | K | Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain |
658 | 2883 | COG3706 | K T | Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain |
516 | 865 | COG3707 | K T | Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains |
310 | 472 | COG3708 | K | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain |
264 | 764 | COG3710 | K | DNA-binding winged helix-turn-helix (wHTH) domain |
205 | 701 | COG3711 | K | Transcriptional antiterminator |
65 | 72 | COG3722 | K | DNA-binding transcriptional regulator, MltR family |
156 | 156 | COG3820 | K | Cell cycle regulator TrcR, DUF1013 family |
572 | 1801 | COG3829 | K T | RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains |
134 | 215 | COG3831 | K | WGR domain, predicted DNA-binding domain in MolR |
273 | 457 | COG3835 | K T | Sugar diacid utilization regulator CdaR |
120 | 135 | COG3877 | K | Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family |
23 | 24 | COG3888 | K | Predicted transcriptional regulator |
97 | 118 | COG3901 | K | Transcriptional regulator NosR of nitric oxide reductase |
172 | 227 | COG3905 | K | Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain |
64 | 122 | COG3933 | K | Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains |
146 | 200 | COG3947 | K T | Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains |
27 | 27 | COG4008 | K | Predicted metal-binding transcription factor, methanogenesis marker domain 9 |
250 | 302 | COG4109 | K | Predicted transcriptional regulator containing CBS domains |
123 | 152 | COG4189 | K | Predicted transcriptional regulator, ArsR family |
106 | 175 | COG4190 | K | Predicted transcriptional regulator, contains HTH domain |
88 | 112 | COG4197 | K | DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily |
34 | 36 | COG4344 | K | Predicted transciptional regulator, contains HTH domain |
149 | 149 | COG4463 | K | Transcriptional regulator CtsR |
135 | 145 | COG4465 | K | GTP-sensing pleiotropic transcriptional regulator CodY |
61 | 103 | COG4512 | K T | Accessory gene regulator protein AgrB |
82 | 133 | COG4533 | K | DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain |
407 | 664 | COG4565 | K T | DNA-binding response regulator DpiB of citrate/malate metabolism |
364 | 1003 | COG4566 | K T | DNA-binding response regulator, FixJ family, consists of REC and HTH domains |
315 | 409 | COG4567 | K T | DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains |
100 | 99 | COG4568 | K | Transcriptional antiterminator Rof (Rho-off) |
116 | 127 | COG4578 | K | DNA-binding transcriptional regulator of glucitol operon |
82 | 85 | COG4650 | K T | Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
32 | 66 | COG4738 | K | Predicted transcriptional regulator |
83 | 352 | COG4742 | K | Predicted transcriptional regulator, contains HTH domain |
523 | 1370 | COG4753 | K T | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains |
100 | 101 | COG4776 | K | Exoribonuclease II |
29 | 30 | COG4800 | K | Predicted transcriptional regulator with an HTH domain |
31 | 31 | COG4860 | K | Predicted DNA-binding transcriptional regulator, ArsR family |
94 | 120 | COG4862 | K T N | Negative regulator MecA of genetic competence, sporulation and motility |
36 | 45 | COG4871 | K | Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding domain |
311 | 739 | COG4886 | K | Leucine-rich repeat (LRR) protein |
28 | 28 | COG4888 | K | Transcription elongation factor Elf1, contains Zn-ribbon domain |
39 | 60 | COG4903 | K | Competence transcription factor ComK |
78 | 82 | COG4933 | K | Predicted transcriptional regulator, contains an HTH and PUA-like domains |
263 | 599 | COG4941 | K | Predicted RNA polymerase sigma factor, contains C-terminal TPR domain |
129 | 319 | COG4957 | K | Predicted transcriptional regulator |
664 | 2549 | COG4977 | K | Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain |
7 | 8 | COG5108 | K | Mitochondrial DNA-directed RNA polymerase |
4 | 4 | COG5164 | K | Transcription elongation factor SPT5 |
15 | 16 | COG5190 | K | TFIIF-interacting CTD phosphatase, includes NLI-interacting factor |
65 | 90 | COG5304 | K | Predicted DNA binding protein, CopG/RHH family |
64 | 101 | COG5419 | K | Hexameric transcriptional regulator RovC, contains DUF2285 domain |
110 | 121 | COG5450 | K | Transcription regulator of the Arc/MetJ class |
61 | 61 | COG5503 | K V | DNA-dependent RNA polymerase auxiliary subunit epsilon |
62 | 84 | COG5566 | K X | Transcriptional regulator, middle operon regulator (Mor) family |
17 | 19 | COG5625 | K | Predicted DNA-binding transcriptional regulator, contains HTH domain |
73 | 79 | COG5631 | K | Predicted transcription regulator, contains HTH domain, MarR family |
301 | 433 | COG5662 | K | Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) |
6 | 6 | COG5665 | K | CCR4-NOT transcriptional regulation complex, NOT5 subunit |
107 | 106 | COG5811 | K D | Sporulation sigma factor SigE (mother cell-specific, SpoIIGB) |
101 | 102 | COG5812 | K D | Sporulation sigma factor SigF (forespore-specific, SpoIIAC) |
108 | 108 | COG5813 | K D | Sporulation sigma factor SigG (forespore-specific, SpoIIIG) |
102 | 107 | COG5814 | K D | Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB) |
107 | 107 | COG5818 | K D O | Stage II sporulation protein SpoIIGA (protease, processing of pro-sigma-E to active sigma-E) |
107 | 111 | COG5830 | K D | Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes |
108 | 117 | COG5845 | K D | Stage V sporulation protein SpoVT, regulator of stationary/sporulation gene expression |
36 | 70 | COG5850 | K D | Prespore-specific transcriptional regulator RsfA |
43 | 43 | COG5865 | K D | Forespore-specific anti-sigma-G factor CsfB/Gin |
12 | 12 | COG5870 | K D | Uncharacterized sporulation protein YbaK, contains DUF2521 domain (not related to E. coli deacylase YbaK, COG2606) |
69 | 73 | COG5905 | K D | Spore transcriptional regulator GerE (stand-alone HTH domain) |