CHEBI:28862 - dGDP

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ChEBI Name dGDP
ChEBI ID CHEBI:28862
Definition A purine 2'-deoxyribonucleoside 5'-diphosphate having guanine as the nucleobase.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:41949, CHEBI:10495, CHEBI:19245
Supplier Information No supplier information found for this compound.
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Nicotinamide (INN, BAN UK) or niacinamide (USAN US) is a form of vitamin B3 found in food and used as a dietary supplement and medication. As a supplement, it is used orally (swallowed by mouth) to prevent and treat pellagra (niacin deficiency). While nicotinic acid (niacin) may be used for this purpose, nicotinamide has the benefit of not causing skin flushing. As a cream, it is used to treat acne, and has been observed in clinical studies to improve the appearance of aging skin by reducing hyperpigmentation and redness. It is a water-soluble vitamin. Side effects are minimal. At high doses, liver problems may occur. Normal amounts are safe for use during pregnancy. Nicotinamide is in the vitamin B family of medications, specifically the vitamin B3 complex. It is an amide of nicotinic acid. Foods that contain nicotinamide include yeast, meat, milk, and green vegetables. Nicotinamide was discovered between 1935 and 1937. It is on the World Health Organization's List of Essential Medicines. Nicotinamide is available as a generic medication and over the counter. Commercially, nicotinamide is made from either nicotinic acid (niacin) or nicotinonitrile. In some countries, grains have nicotinamide added to them. Extra-terrestrial nicotinamide has been found in carbonaceous chondrite meteorites.
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Formula C10H15N5O10P2
Net Charge 0
Average Mass 427.20132
Monoisotopic Mass 427.02942
InChI InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
InChIKey CIKGWCTVFSRMJU-KVQBGUIXSA-N
SMILES Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(O)=O)O1
Metabolite of Species Details
Mus musculus (NCBI:txid10090) Source: BioModels - MODEL1507180067 See: PubMed
Escherichia coli (NCBI:txid562) See: PubMed
Roles Classification
Biological Role(s): fundamental metabolite
Any metabolite produced by all living cells.
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
(via nucleoside 5'-diphosphate )
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ChEBI Ontology
Outgoing dGDP (CHEBI:28862) has role fundamental metabolite (CHEBI:78675)
dGDP (CHEBI:28862) is a deoxyguanosine phosphate (CHEBI:23625)
dGDP (CHEBI:28862) is a guanyl deoxyribonucleotide (CHEBI:63573)
dGDP (CHEBI:28862) is a purine 2'-deoxyribonucleoside 5'-diphosphate (CHEBI:37036)
dGDP (CHEBI:28862) is conjugate acid of dGDP(3−) (CHEBI:58595)
Incoming dGDP(3−) (CHEBI:58595) is conjugate base of dGDP (CHEBI:28862)
IUPAC Name
2'-deoxyguanosine 5'-(trihydrogen diphosphate)
Synonyms Sources
2'-deoxyguanosine 5'-diphosphate ChEBI
2'-Deoxyguanosine 5'-diphosphate KEGG COMPOUND
deoxyguanosine diphosphate ChEBI
dGDP KEGG COMPOUND
Manual Xrefs Databases
C00019355 KNApSAcK
C00361 KEGG COMPOUND
DB03491 DrugBank
Deoxyguanosine_diphosphate Wikipedia
DGDP MetaCyc
DGI PDBeChem
ECMDB00960 ECMDB
HMDB0000960 HMDB
YMDB00898 YMDB
View more database links
Registry Number Type Source
68703 Reaxys Registry Number Reaxys
Citations Types Sources
16240436 PubMed citation Europe PMC
22761426 PubMed citation Europe PMC
Last Modified
27 January 2016