appears_in: [] depends_on: [] deprecated: false description: WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities. example: WBGene00000001 homepage: https://www.wormbase.org/ keywords: - anatomy - blast - c elegans - catalog - database - faseb list - gene - gene expression - gene function - gene mapping - gene prediction - geneotype - genome - genomic sequence - genomics - life science - ortholog - orthology assignment - phenotype - roundworm - transposon family - wormmart mappings: biocontext: WormBase biolink: WBVocab edam: '1805' fairsharing: FAIRsharing.zx1td8 go: WB_REF integbio: nbdc00740 miriam: wb n2t: wb ncbi: WormBase pathguide: '426' prefixcommons: wormbase re3data: r3d100010424 rrid: WB-STRAIN:WBStrain uniprot: DB-0110 wikidata: P3860 name: Wormbase Gene namespace_in_lui: false pattern: ^WB[A-Z][a-z]+\d+$ preferred_prefix: WormBase prefix: wormbase providers: - code: agr description: WormBase through the Alliance of Genome Resources homepage: https://www.alliancegenome.org name: WormBase through the Alliance of Genome Resources uri_format: https://www.alliancegenome.org/gene/WB:$1 - code: bio2rdf description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. homepage: https://bio2rdf.org name: Bio2RDF uri_format: http://bio2rdf.org/wormbase:$1 - code: wormbase.c_elegans description: Pages describing C. Elegans genes. homepage: http://www.wormbase.org name: WormBase C. Elegans Gene Portal uri_format: http://www.wormbase.org/species/c_elegans/gene/$1 publications: - doi: 10.1093/nar/gkz920 pmc: PMC7145598 pubmed: '31642470' title: 'WormBase: a modern Model Organism Information Resource' year: 2020 - doi: 10.1093/nar/gkx998 pmc: PMC5753391 pubmed: '29069413' title: 'WormBase 2017: molting into a new stage' year: 2018 - pubmed: '24194605' - doi: 10.1186/1471-2105-12-175 pmc: PMC3213741 pubmed: '21595960' title: 'Toward an interactive article: integrating journals and biological databases' year: 2011 - doi: 10.1093/nar/gkq1116 pmc: PMC3013707 pubmed: '21071413' title: 'The BioGRID Interaction Database: 2011 update' year: 2010 - doi: 10.1186/1471-2105-11-550 pmc: PMC2992068 pubmed: '21059240' title: Localizing triplet periodicity in DNA and cDNA sequences year: 2010 - doi: 10.1002/mrd.21130 pmc: PMC2830379 pubmed: '19921742' title: 'Representing ontogeny through ontology: a developmental biologist''s guide to the gene ontology' year: 2010 - doi: 10.1093/nar/gkp1018 pmc: PMC2808930 pubmed: '19920128' title: 'The Gene Ontology in 2010: extensions and refinements' year: 2009 - doi: 10.1093/nar/gkp952 pmc: PMC2808986 pubmed: '19910365' title: 'WormBase: a comprehensive resource for nematode research' year: 2009 - doi: 10.1186/1471-2105-10-228 pmc: PMC2719631 pubmed: '19622167' title: 'Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation' year: 2009 - doi: 10.1371/journal.pcbi.1000431 pmc: PMC2699109 pubmed: '19578431' title: 'The Gene Ontology''s Reference Genome Project: a unified framework for functional annotation across species' year: 2009 - doi: 10.1186/1471-2105-9-549 pmc: PMC2651883 pubmed: '19099578' title: nGASP--the nematode genome annotation assessment project year: 2008 - pubmed: '17991679' - pubmed: '15608221' - doi: 10.1093/nar/29.1.82 pmc: PMC29781 pubmed: '11125056' title: 'WormBase: network access to the genome and biology of Caenorhabditis elegans' year: 2001 synonyms: - WB_REF - wb - wormbase twitter: wormbase uri_format: https://www.wormbase.org/get?name=$1