appears_in: [] contact: email: bork@embl.de name: Peer Bork orcid: 0000-0002-2627-833X depends_on: [] deprecated: false description: "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is\ \ a database of known and predicted protein interactions.\r\nThe interactions include\ \ direct (physical) and indirect (functional) associations; they are derived from\ \ four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression,\ \ Previous Knowledge. STRING quantitatively integrates interaction data from these\ \ sources for a large number of organisms, and transfers information between these\ \ organisms where applicable." example: P53350 homepage: http://string.embl.de/ keywords: - biology - interaction - life science - protein mappings: biocontext: STRING edam: '2302' fairsharing: FAIRsharing.9b7wvk integbio: nbdc00690 miriam: string n2t: string pathguide: '93' prefixcommons: string re3data: r3d100010604 uniprot: DB-0141 name: Search Tool for Retrieval of Interacting Genes/Proteins namespace_in_lui: false pattern: ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$ preferred_prefix: string prefix: string providers: - code: CURATOR_REVIEW description: STRING Mirror at Heidelberg homepage: http://string-db.org/ name: STRING Mirror at Heidelberg uri_format: http://string-db.org/interactions/$1 - code: bio2rdf description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. homepage: https://bio2rdf.org name: Bio2RDF uri_format: http://bio2rdf.org/string:$1 provides: uniprot publications: - doi: 10.1093/nar/gky1131 pmc: PMC6323986 pubmed: '30476243' title: 'STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets' year: 2019 - doi: 10.1093/nar/gkw937 pmc: PMC5210637 pubmed: '27924014' title: 'The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible' year: 2016 - doi: 10.1093/bioinformatics/btv696 pmc: PMC4896368 pubmed: '26614125' title: 'SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles' year: 2015 - doi: 10.1093/nar/gku1003 pmc: PMC4383874 pubmed: '25352553' title: 'STRING v10: protein-protein interaction networks, integrated over the tree of life' year: 2014 - doi: 10.1093/nar/gks1094 pmc: PMC3531103 pubmed: '23203871' title: 'STRING v9.1: protein-protein interaction networks, with increased coverage and integration' year: 2012 - doi: 10.1093/nar/gkn760 pmc: PMC2686466 pubmed: '18940858' title: STRING 8--a global view on proteins and their functional interactions in 630 organisms year: 2008 synonyms: [] uri_format: http://string.embl.de/interactions/$1