{"prefix": "rhea", "name": null, "description": null, "pattern": null, "uri_format": "https://www.rhea-db.org/rhea/$1", "providers": null, "homepage": null, "repository": null, "contact": null, "example": null, "example_extras": null, "example_decoys": null, "license": null, "version": null, "part_of": null, "provides": null, "download_owl": null, "download_obo": null, "download_json": null, "banana": null, "banana_peel": null, "deprecated": null, "mappings": {"biocontext": "RHEA", "edam": "2644", "fairsharing": "FAIRsharing.pn1sr5", "go": "RHEA", "miriam": "rhea", "n2t": "rhea", "prefixcommons": "rhea", "re3data": "r3d100010891"}, "synonyms": ["RHEA"], "references": null, "appears_in": null, "depends_on": null, "namespace_in_lui": null, "no_own_terms": null, "comment": null, "contributor": null, "contributor_extras": null, "reviewer": null, "proprietary": null, "has_canonical": null, "preferred_prefix": null, "twitter": null, "github_request_issue": null, "miriam": {"deprecated": false, "description": " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.", "homepage": "https://www.rhea-db.org/", "id": "00000082", "name": "Rhea", "namespaceEmbeddedInLui": false, "pattern": "^\\d{5}$", "prefix": "rhea", "sampleId": "12345", "uri_format": "https://www.rhea-db.org/rhea/$1"}, "n2t": {"description": "Rhea is a manually annotated reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest), providing detailed information about structure, formulae and charge. It is populated with the reactions found in the EC list, IntEnz and ENZYME databases), as well as other biochemical reactions, including those that are often termed \"spontaneous\".", "example": "12345", "homepage": "https://www.rhea-db.org/", "name": "Rhea", "namespaceEmbeddedInLui": false, "pattern": "^\\d{5}$", "prefix": "rhea", "uri_format": "https://www.rhea-db.org/reaction?id=$1"}, "prefixcommons": {"description": "Rhea is a manually annotated reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest), providing detailed information about structure, formulae and charge. It is populated with the reactions found in the EC list, IntEnz and ENZYME databases), as well as other biochemical reactions, including those that are often termed \"spontaneous\".", "example": "12345", "homepage": "http://www.ebi.ac.uk/rhea/", "keywords": ["reaction", "small molecule"], "name": "Reaction database", "pattern": "^\\d{5}$", "prefix": "rhea", "uri_format": "http://www.ebi.ac.uk/rhea//reaction.xhtml?id=$1"}, "wikidata": {"database": "Q24265951"}, "go": {"description": "Rhea is a manually annotated database of chemical reactions. All data in Rhea is freely accessible and available for anyone to use.", "homepage": "https://www.rhea-db.org", "name": "Rhea, the Annotated Reactions Database", "prefix": "RHEA", "uri_format": "https://www.rhea-db.org/rhea/$1"}, "obofoundry": null, "bioportal": null, "ecoportal": null, "agroportal": null, "cropoct": null, "ols": null, "aberowl": null, "ncbi": null, "uniprot": null, "biolink": null, "cellosaurus": null, "ontobee": null, "cheminf": null, "fairsharing": {"abbreviation": "Rhea", "description": "Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reactions of biological interest. Rhea can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analysis. Rhea describes enzyme-catalyzed reactions covering the IUBMB Enzyme Nomenclature list as well as additional reactions, including spontaneously occurring reactions. Rhea is built on ChEBI (Chemical Entities of Biological Interest) ontology of small molecules to describe its reaction participants. Since December 2018, Rhea is the standard for enzyme annotation in UniProt.", "id": "1639", "name": "Rhea", "prefix": "FAIRsharing.pn1sr5", "subjects": ["Biochemistry", "Life Science"]}, "biocontext": {"is_identifiers": true, "is_obo": false, "prefix": "RHEA", "uri_format": "http://identifiers.org/rhea/$1"}, "edam": {"description": "Identifier of an enzyme-catalysed reaction from the Rhea database.", "name": "Reaction ID (Rhea)", "obsolete": false, "prefix": "2644"}, "re3data": {"description": "Rhea is a freely available and comprehensive resource of expert-curated biochemical reactions. It has been designed to provide a non-redundant set of chemical transformations for applications such as the functional annotation of enzymes, pathway inference and metabolic network reconstruction. There are three types of reaction participants (reactants and products): Small molecules, Rhea polymers, Generic compounds.\nAll three types of reaction participants are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both mass and charge balance of the reactions. We have populated the database with the reactions found in the enzyme classification (i.e. in the IntEnz and ENZYME databases), extending it with additional known reactions of biological interest. While the main focus of Rhea is enzyme-catalysed reactions, other biochemical reactions (including those that are often termed \"spontaneous\") also are included.", "homepage": "https://www.rhea-db.org/", "name": "Rhea", "prefix": "r3d100010891", "xrefs": {"fairsharing": "FAIRsharing.pn1sr5", "miriam": "00000082", "nlx": "70986", "omics": "06093"}}}