appears_in: - agro - foodon - hso - labo - maxo - mco - one - ons - proco - rbo - scdo banana: OBI banana_peel: ':' contact: email: bpeters@lji.org github: bpeters42 name: Bjoern Peters orcid: 0000-0002-8457-6693 depends_on: [] deprecated: false description: The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO). download_obo: https://github.com/obi-ontology/obi/raw/master/views/obi.obo download_owl: http://purl.obolibrary.org/obo/obi.owl example: 0400109 homepage: http://obi-ontology.org keywords: - assay - biomedical science - data transformation - device - functional genomics - life science - obo - ontology - protocol - reagent - report - study design license: CC-BY-4.0 logo: https://svn.code.sf.net/p/obi/code/trunk/web/htdocs/images/obi-lotext.png mappings: aberowl: OBI biocontext: OBI bioportal: OBI fairsharing: FAIRsharing.284e1z go: OBI miriam: obi n2t: obi obofoundry: obi ols: obi ontobee: OBI prefixcommons: obi name: Ontology for Biomedical Investigations namespace_in_lui: true pattern: ^\d{7}$ preferred_prefix: OBI prefix: obi providers: - code: bio2rdf description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. homepage: https://bio2rdf.org name: Bio2RDF uri_format: http://bio2rdf.org/obi:$1 publications: - doi: 10.1371/journal.pone.0154556 pmc: PMC4851331 pubmed: '27128319' title: The Ontology for Biomedical Investigations year: 2016 - doi: 10.1093/database/bau132 pmc: PMC4309925 pubmed: '25632945' title: 'Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach' year: 2015 - doi: 10.1186/2041-1480-4-s1-s6 pmc: PMC3633001 pubmed: '23734660' title: 'Query enhancement through the practical application of ontology: the IEDB and OBI' year: 2013 - doi: 10.4056/sigs.1994602 pmc: PMC3235517 pubmed: '22180825' title: Minimum Information about a Genotyping Experiment (MIGEN) year: 2011 - doi: 10.1186/2041-1480-1-s1-s7 pmc: PMC2903726 pubmed: '20626927' title: Modeling biomedical experimental processes with OBI year: 2010 rdf_uri_format: http://purl.obolibrary.org/obo/OBI_$1 repository: https://github.com/obi-ontology/obi synonyms: [] uri_format: http://purl.obolibrary.org/obo/OBI_$1 version: '2024-01-09'