appears_in: []
banana: mzspec
contact:
  email: gerhard.mayer@rub.de
  github: germa
  name: Gerhard Mayer
  orcid: 0000-0002-1767-2343
contributor_extras:
- email: lindsey.anderson@pnnl.gov
  github: lnanderson
  name: Lindsey N. Anderson
  orcid: 0000-0002-8741-7823
depends_on: []
deprecated: false
description: The Universal Spectrum Identifier (USI) is a compound identifier that
  provides an abstract path to refer to a single spectrum generated by a mass spectrometer,
  and potentially the ion that is thought to have produced it.
example: PXD002255:ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2
example_extras: []
homepage: http://www.psidev.info/usi
keywords:
- data analysis
- data identity and mapping
- data retrieval
- lipidomics
- mass spectrum
- metabolomics
- proteomics
mappings:
  biocontext: MZSPEC
  fairsharing: FAIRsharing.b549b8
  miriam: mzspec
  n2t: mzspec
name: Universal Spectrum Identifier
namespace_in_lui: true
pattern: ^.+$
preferred_prefix: mzspec
prefix: mzspec
providers:
- code: ''
  description: Universal Spectrum Identifier through Peptide Atlas
  homepage: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum
  name: Universal Spectrum Identifier through Peptide Atlas
  uri_format: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:$1
- code: ebi
  description: PRIDE is a database of PRoteomics IDEntifications. It contains protein
    and peptide identifications (including details of post-translational modifications)
    together with the mass spectrometric evidence supporting these identifications.
    PRIDE acts as a repository for mass spectrometry data, specifically the fragment
    ion spectra used to identify peptide sequences.
  homepage: https://www.ebi.ac.uk/pride
  name: PRIDE
  uri_format: https://www.ebi.ac.uk/pride/archive/usi?usi=mzspec:$1
publications:
- doi: 10.1038/s41592-021-01184-6
  pmc: PMC8405201
  pubmed: '34183830'
  title: Universal Spectrum Identifier for mass spectra
  year: 2021
repository: https://github.com/HUPO-PSI/usi
synonyms: []
uri_format: http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1
