{"prefix":"mirgenedb","name":"microRNA Gene Database","description":"mircoRNA Gene Database is a collection of animal microRNA genes. This database allows researchers to analyze mircoRNA properties like secondary structure and features in a phylogenetic context.","pattern":"^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$","uri_format":"https://mirgenedb.org/browse?qtype=mgid&org=ALL&query=$1","providers":[],"homepage":"https://mirgenedb.org/","contact":{"name":"Bastian Fromm","orcid":"0000-0003-0352-3037","email":"BastianFromm@gmail.com"},"example":"Hsa-Let-7-P2a3","example_extras":[],"deprecated":false,"mappings":{},"synonyms":[],"keywords":[],"publications":[{"pubmed":"39673268","doi":"10.1093/nar/gkae1094","pmc":"PMC11701709","title":"MirGeneDB 3.0: improved taxonomic sampling, uniform nomenclature of novel conserved microRNA families and updated covariance models","year":2025},{"pubmed":"34850127","doi":"10.1093/nar/gkab1101","pmc":"PMC8728216","title":"MirGeneDB 2.1: toward a complete sampling of all major animal phyla","year":2022},{"pubmed":"31598695","doi":"10.1093/nar/gkz885","pmc":"PMC6943042","title":"MirGeneDB 2.0: the metazoan microRNA complement","year":2020},{"pubmed":"26473382","doi":"10.1146/annurev-genet-120213-092023","pmc":"PMC4743252","title":"A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome","year":2015}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor":{"name":"Nalika Palayoor","orcid":"0009-0008-8406-631X","email":"palayoor.n@northeastern.edu","github":"nalikapalayoor"},"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"preferred_prefix":"mirgenedb","github_request_issue":1393}