appears_in: []
contact:
  email: tgilbert@sund.ku.dk
  name: Tom Gilbert
  orcid: 0000-0002-5805-7195
contributor:
  email: palayoor.n@northeastern.edu
  github: nalikapalayoor
  name: Nalika Palayoor
  orcid: 0009-0008-8406-631X
depends_on: []
deprecated: false
description: The HoloFood Data Portal centralizes access to datasets from the HoloFood
  project, which explores host microbiota interactions in salmon and chicken production.
  It links phenotypic data with microbiome samples and derived genomic resources and
  therefore simplifies data integration, supporting researchers in multiomics and
  microbiome studies. The identifiers in the animal semantic space correspond to animals
  that samples in the database are obtained from.
example: SAMEA112904733
example_extras: []
github_request_issue: 1400
homepage: https://www.holofooddata.org
keywords: []
mappings: {}
name: HoloFood animal
pattern: ^SAMEA\d{9}$
preferred_prefix: holofood.animal
prefix: holofood.animal
providers: []
publications:
- doi: 10.1093/database/baae112
  pmc: PMC11724189
  pubmed: '39797569'
  title: 'HoloFood Data Portal: holo-omic datasets for analysing host-microbiota interactions
    in animal production'
  year: 2025
reviewer:
  email: b.gyori@northeastern.edu
  github: bgyori
  name: Benjamin M. Gyori
  orcid: 0000-0001-9439-5346
synonyms: []
uri_format: https://www.holofooddata.org/animal/$1
