appears_in: []
contact:
  email: Philipp.Bucher@sib.swiss
  name: Philipp Bucher
  orcid: 0000-0002-0816-7775
contributor_extras:
- email: sebastien.moretti@sib.swiss
  github: smoretti
  name: Sebastien Moretti
  orcid: 0000-0003-3947-488X
depends_on: []
deprecated: false
description: The Eukaryotic Promoter Database (EPD) is an annotated non-redundant
  collection of eukaryotic POL II promoters, for which the transcription start site
  has been determined experimentally. Access to promoter sequences is provided by
  pointers to positions in nucleotide sequence entries. The annotation part of an
  entry includes description of the initiation site mapping data, cross-references
  to other databases, and bibliographic references. EPD is structured in a way that
  facilitates dynamic extraction of biologically meaningful promoter subsets for comparative
  sequence analysis.
example: TA_H3
example_extras: []
homepage: https://epd.expasy.org/epd/
keywords:
- bioinformatics
- biology
mappings:
  biocontext: EPD
  edam: '2386'
  fairsharing: FAIRsharing.yk1krv
  integbio: nbdc00438
  miriam: epd
  n2t: epd
  ncbi: EPD
  uniprot: DB-0205
name: Eukaryotic Promoter Database
namespace_in_lui: false
pattern: ^[A-Z-_0-9]+$
preferred_prefix: epd
prefix: epd
providers: []
publications:
- doi: 10.1093/nar/27.1.307
  pmc: PMC148166
  pubmed: '9847211'
  title: 'The Eukaryotic Promoter Database (EPD): recent developments'
  year: 1999
- doi: 10.1093/nar/26.1.353
  pmc: PMC147208
  pubmed: '9399872'
  title: The Eukaryotic Promoter Database EPD
  year: 1998
- doi: 10.1093/nar/14.24.10009
  pmc: PMC341352
  pubmed: '3808945'
  title: Compilation and analysis of eukaryotic POL II promoter sequences
  year: 1986
- doi: 10.1093/nar/gkx807
  pmc: PMC5753345
  pubmed: '28981707'
  title: 'The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics'
  year: 2018
- doi: 10.1093/nar/gkw1069
  pmc: PMC5210552
  pubmed: '27899657'
  title: 'The eukaryotic promoter database in its 30th year: focus on non-vertebrate
    organisms'
  year: 2016
- doi: 10.1093/nar/gku1111
  pmc: PMC4383928
  pubmed: '25378343'
  title: 'The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis
    tools'
  year: 2014
- doi: 10.1093/nar/gks1233
  pmc: PMC3531148
  pubmed: '23193273'
  title: EPD and EPDnew, high-quality promoter resources in the next-generation sequencing
    era
  year: 2012
- doi: 10.1093/nar/gkj146
  pmc: PMC1347508
  pubmed: '16381980'
  title: 'EPD in its twentieth year: towards complete promoter coverage of selected
    model organisms'
  year: 2006
- doi: 10.1093/nar/gkh122
  pmc: PMC308856
  pubmed: '14681364'
  title: 'The Eukaryotic Promoter Database EPD: the impact of in silico primer extension'
  year: 2004
- doi: 10.1093/nar/30.1.322
  pmc: PMC99099
  pubmed: '11752326'
  title: 'The Eukaryotic Promoter Database, EPD: new entry types and links to gene
    expression data'
  year: 2002
- doi: 10.1093/nar/28.1.302
  pmc: PMC102462
  pubmed: '10592254'
  title: The eukaryotic promoter database (EPD)
  year: 2000
synonyms: []
uri_format: https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1
