aberowl: description: An ontology of environmental systems, components, and processes. download_owl: http://aber-owl.net/media/ontologies/ENVO/57/envo.owl homepage: http://environmentontology.org/ name: Environment Ontology prefix: ENVO agroportal: contact: email: pier.buttigieg@awi.de name: 'Pier Luigi Buttigieg (ORCID: orcid.org/0000-0002-4366-3088)' description: ENVO is an ontology which represents knowledge about environments,environmental processes, ecosystems, habitats, and related entities, ENVO is an ontology which represents knowledge about environments,environmental processes, ecosystems, habitats, and related entities example_uri: http://purl.obolibrary.org/obo/ENVO_00005746 homepage: http://environmentontology.org/ license: CC0-1.0 name: Environment Ontology prefix: ENVO publication: https://doi.org/10.1186/s13326-016-0097-6 repository: https://github.com/EnvironmentOntology/envo version: '2023-02-13' biocontext: is_identifiers: false is_obo: true prefix: ENVO uri_format: http://purl.obolibrary.org/obo/ENVO_$1 bioportal: description: 'Official PURL: http://purl.obolibrary.org/obo/envo.owl The most up-to-date information about ENVO is available here: http://www.obofoundry.org/ontology/envo.html EnvO is an OBO Foundry and Library ontology for the concise, controlled description of environmental entities such as ecosystems, environmental processes, and environmental qualities. It closely interoperates with a broad collection of other OBO ontologies and is used in a diverse range of projects.' homepage: http://environmentontology.org/ name: Environment Ontology prefix: ENVO publication: http://environmentontology.org/ version: '2023-02-13' fairsharing: abbreviation: ENVO description: The Environment Ontology (EnvO) provides a controlled, structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms ranging from astronomical objects, through planetary scale biomes, to nanomaterials. Further, these terms are interlinked with logical axioms describing their composition, colocalisation, and relationships to environmental and biological processes. Using ENVO terms for an environmental description allows a comprehensive description of environment that is key to machine-assisted integration, archiving and federated searching of environmental data. homepage: http://environmentontology.org/ license: CC-BY-3.0 name: Environment Ontology prefix: FAIRsharing.azqskx publications: - doi: 10.1186/s13326-016-0097-6 pubmed_id: 27664130 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed_id: 24330602 title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed_id: 26896844 title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed_id: 26713234 title: Emerging semantics to link phenotype and environment. repository: https://github.com/EnvironmentOntology/envo subjects: - Environmental Science - Ecology - Life Science - Nutritional Science - Epidemiology twitter: envoTweets mappings: aberowl: ENVO agroportal: ENVO biocontext: ENVO bioportal: ENVO fairsharing: FAIRsharing.azqskx miriam: envo n2t: envo obofoundry: envo ols: envo ontobee: ENVO miriam: deprecated: false description: The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations. homepage: https://www.ebi.ac.uk/ols/ontologies/envo id: 00000591 name: Environment Ontology namespaceEmbeddedInLui: true pattern: ^ENVO:\d{7,8}$ prefix: envo sampleId: 09200010 uri_format: https://www.ebi.ac.uk/ols/ontologies/envo/terms?obo_id=ENVO:$1 n2t: description: The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations. example: 09200010 homepage: http://purl.bioontology.org/ontology/ENVO/ name: The Environment Ontology through BioPortal namespaceEmbeddedInLui: true pattern: ^ENVO:\d{8}$ prefix: envo uri_format: http://purl.bioontology.org/ontology/ENVO/ENVO:$1 obofoundry: appears_in: - agro - cdno - ecocore - ecto - foodon - ons - pco - rbo - scdo contact: pier.buttigieg@awi.de contact.github: pbuttigieg contact.label: Pier Luigi Buttigieg contact.orcid: 0000-0002-4366-3088 depends_on: - chebi - foodon - go - ncbitaxon - pco - po - ro - uberon deprecated: false description: An ontology of environmental systems, components, and processes. domain: environment download.json: http://purl.obolibrary.org/obo/envo.json download.obo: http://purl.obolibrary.org/obo/envo.obo download.owl: http://purl.obolibrary.org/obo/envo.owl homepage: http://environmentontology.org/ license: CC0 1.0 license.url: http://creativecommons.org/publicdomain/zero/1.0/ name: Environment Ontology preferredPrefix: ENVO prefix: envo publications: - id: https://doi.org/10.1186/2041-1480-4-43 preferred: true title: 'The environment ontology: contextualising biological and biomedical entities' - id: https://doi.org/10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' repository: https://github.com/EnvironmentOntology/envo ols: description: ENVO is an ontology which represents knowledge about environments,environmental processes, ecosystems, habitats, and related entities download: http://purl.obolibrary.org/obo/envo.owl homepage: http://environmentontology.org/ name: The Environment Ontology prefix: envo version: '2021-05-14' version.iri: http://purl.obolibrary.org/obo/envo/releases/2021-05-14/envo.owl ontobee: library: Library name: Environment Ontology prefix: ENVO pattern: ^\d{7,8}$ publications: - doi: 10.1186/s13326-016-0097-6 pmc: PMC5035502 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' year: 2016 - doi: 10.1093/database/baw005 pmc: PMC4761108 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' year: 2016 - doi: 10.7717/peerj.1470 pmc: PMC4690371 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. year: 2015 - doi: 10.1186/2041-1480-4-43 pmc: PMC3904460 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' year: 2013 - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment. - doi: 10.1186/2041-1480-4-43 title: 'The environment ontology: contextualising biological and biomedical entities' - doi: 10.1186/s13326-016-0097-6 title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation' - doi: 10.1186/s13326-016-0097-6 pubmed: '27664130' title: 'The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.' - doi: 10.1186/2041-1480-4-43 pubmed: '24330602' title: 'The environment ontology: contextualising biological and biomedical entities.' - doi: 10.1093/database/baw005 pubmed: '26896844' title: 'EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.' - doi: 10.7717/peerj.1470 pubmed: '26713234' title: Emerging semantics to link phenotype and environment.