appears_in: [] contact: email: matus.kalas@uib.no github: matuskalas name: Matúš Kalaš orcid: 0000-0002-1509-4981 depends_on: [] deprecated: false description: 'EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).' download_obo: https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo download_owl: https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl example: data_1664 homepage: http://edamontology.org keywords: - analysis - bioinformatics - data acquisition - data transformation - life science - obo - ontology - subject agnostic mappings: aberowl: EDAM agroportal: EDAM biocontext: EDAM bioportal: EDAM fairsharing: FAIRsharing.a6r7zs miriam: edam n2t: edam ols: edam ontobee: EDAM prefixcommons: edam name: EDAM Ontology namespace_in_lui: false pattern: ^(data|topic|operation|format)\_\d{4}$ preferred_prefix: edam prefix: edam providers: - code: bio2rdf description: Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers. homepage: https://bio2rdf.org name: Bio2RDF uri_format: http://bio2rdf.org/edam:$1 publications: - doi: 10.1093/bioinformatics/btt113 pmc: PMC3654706 pubmed: '23479348' title: 'EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats' year: 2013 - doi: 10.7490/f1000research.1118900.1 title: 'EDAM: the bioscientific data analysis ontology (update 2021)' year: 2021 - doi: 10.5281/zenodo.3899895 title: 'edamontology/edamontology: EDAM 1.25' year: 2020 rdf_uri_format: http://edamontology.org/$1 repository: https://github.com/edamontology/edamontology synonyms: [] twitter: edamontology uri_format: https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1