appears_in: []
contact:
  email: liujianghua@usc.edu.cn
  name: Jiang-hua Liu
  orcid: 0000-0003-0344-3168
contributor:
  email: maaya.m466@gmail.com
  github: maayamanoj466
  name: Maaya Manoj
  orcid: 0009-0000-6974-6386
depends_on: []
deprecated: false
description: DiabetesOmic is a multi-omics database designed to collect and analyze
  transcriptional regulatory information across five high-throughput sequencing modalities,
  including ChIP-seq, RNA-seq, ATAC-seq, scATAC-seq, and scRNA-seq. This database's
  identifiers each represent a single sample. It contains clinical complication annotations
  including diabetic nephropathy, retinopathy, and atherosclerosis to enhance translational
  relevance. It enables the identification of disease-associated regulatory elements,
  epigenetic modifications, and cell type-specific molecular signatures, providing
  valuable insights into the molecular mechanisms of diabetes and its complications.
example: sample_002
example_extras: []
github_request_issue: 1628
homepage: https://bio.liclab.net/diabetesOmicdb/
keywords:
- diabetes
- omics
- sample
mappings: {}
name: DiabetesOmic
pattern: ^sample_\d{3}$
preferred_prefix: diabetesomic
prefix: diabetesomic
providers: []
publications:
- doi: 10.1016/j.csbj.2025.05.008
  pmc: PMC12158550
  pubmed: '40502930'
  title: 'DiabetesOmic: A comprehensive multi-omics diabetes database'
  year: 2025
reviewer:
  email: b.gyori@northeastern.edu
  github: bgyori
  name: Benjamin M. Gyori
  orcid: 0000-0001-9439-5346
synonyms: []
uri_format: https://bio.liclab.net/diabetesOmicdb/RNA-seq?sampleId=$1
