{"prefix":"cohesindb.loops","name":"CohesinDB - cohesin-related chromatin loop","description":"Contains identifiers of cohesin-related chromatin loops from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related chromatin loop. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information.","pattern":"^CDBL00\\d{6}$","uri_format":"https://cohesindb.iqb.u-tokyo.ac.jp/browseloop/eachloop/$1","providers":[],"homepage":"https://cohesindb.iqb.u-tokyo.ac.jp","contact":{"name":"Ryuichiro Nakato","orcid":"0000-0003-3019-5817","email":"rnakato@iqb.u-tokyo.ac.jp"},"example":"CDBL00540805","example_extras":[],"deprecated":false,"mappings":{},"synonyms":[],"keywords":["chromatin loop","cohesin","interaction","protein"],"publications":[{"pubmed":"36162821","doi":"10.1093/nar/gkac795","pmc":"PMC9825609","title":"CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells","year":2023}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor":{"name":"Maaya Manoj","orcid":"0009-0000-6974-6386","email":"maaya.m466@gmail.com","github":"maayamanoj466"},"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"preferred_prefix":"cohesindb.loops","github_request_issue":1646}