appears_in:
- clo
- ecao
- ehdaa2
- go
- mco
- pcl
- uberon
- xpo
banana: CL
contact:
  email: addiehl@buffalo.edu
  github: addiehl
  name: Alexander Diehl
  orcid: 0000-0001-9990-8331
contributor_extras:
- github: anitacaron
  name: Anita Caron
  orcid: 0000-0002-6523-4866
depends_on:
- chebi
- go
- ncbitaxon
- pato
- pr
- ro
- uberon
deprecated: false
description: The Cell Ontology is designed as a structured controlled vocabulary for
  cell types. The ontology was constructed for use by the model organism and other
  bioinformatics databases, incorporating cell types from prokaryotes to mammals,
  and includes plants and fungi.
download_obo: https://github.com/obophenotype/cell-ontology/raw/master/cl.obo
download_owl: http://purl.obolibrary.org/obo/cl.owl
example: '0000062'
homepage: https://obophenotype.github.io/cell-ontology/
keywords:
- anatomy
- annotation
- cell
- cell biology
- life science
- morphology
- obo
- ontology
license: CC-BY-4.0
logo: https://obofoundry.org/images/CL-logo.jpg
mappings:
  aberowl: CL
  agroportal: CL
  biocontext: CL
  bioportal: CL
  cellosaurus: CL
  fairsharing: FAIRsharing.j9y503
  go: CL
  miriam: cl
  n2t: cl
  obofoundry: cl
  ols: cl
  ontobee: CL
  prefixcommons: cl
  wikidata: P7963
name: Cell Ontology
namespace_in_lui: true
pattern: ^\d{7}$
preferred_prefix: CL
prefix: cl
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/cl:$1
- code: cellguide
  description: CellGuide is a comprehensive resource for knowledge about cell types.
  homepage: https://cellxgene.cziscience.com/cellguide
  name: Cell Guide
  uri_format: https://cellxgene.cziscience.com/cellguide/CL_$1
- code: cellxgene
  description: Explore single cell data through the CZ CELLxGENE portal
  homepage: https://onto.cellxgene-labs.prod.si.czi.technology
  name: CELLxGENE
  uri_format: https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/CL/CL:$1
publications:
- doi: 10.1186/s13326-016-0088-7
  pmc: PMC4932724
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability'
  year: 2016
- doi: 10.1186/1471-2105-12-6
  pmc: PMC3024222
  pubmed: '21208450'
  title: Logical development of the cell ontology
  year: 2011
rdf_uri_format: http://purl.obolibrary.org/obo/CL_$1
repository: https://github.com/obophenotype/cell-ontology
synonyms: []
twitter: CellOntology
uri_format: http://purl.obolibrary.org/obo/CL_$1
version: '2024-09-26'
