aberowl:
  description: The Cell Ontology is a structured controlled vocabulary for cell types
    in animals.
  download_owl: http://aber-owl.net/media/ontologies/CL/93/cl.owl
  homepage: https://obophenotype.github.io/cell-ontology/
  name: Cell Ontology
  prefix: CL
agroportal:
  contact:
    email: addiehl@buffalo.edu
    name: Alex Diehl
  description: An ontology of cell types., An ontology of cell types., An ontology
    of cell types.
  example_uri: http://purl.obolibrary.org/obo/PR_000001889
  homepage: https://github.com/obophenotype/cell-ontology
  license: CC-BY-4.0
  name: Cell Ontology
  prefix: CL
  publication: http://dx.doi.org/doi:10.1093/database/bav010, http://dx.doi.org/doi:10.1186/s13059-014-0560-6
  repository: https://github.com/obophenotype/cell-ontology
  version: '2023-02-19'
biocontext:
  is_identifiers: false
  is_obo: true
  prefix: CL
  uri_format: http://purl.obolibrary.org/obo/CL_$1
bioportal:
  homepage: http://cellontology.org
  name: Cell Ontology
  prefix: CL
  version: '2023-02-19'
cellosaurus:
  category: Anatomy/cell type resources
  homepage: https://obophenotype.github.io/cell-ontology/
  name: Cell Ontology
  prefix: CL
  uri_format: https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/$1
download_obo: https://github.com/obophenotype/cell-ontology/raw/master/cl.obo
example: '0000062'
fairsharing:
  abbreviation: CL
  contact:
    email: addiehl@buffalo.edu
    name: Alexander Diehl
    orcid: 0000-0001-9990-8331
  description: The Cell Ontology (CL) is a candidate OBO Foundry ontology for the
    representation of cell types. First described in 2005, the CL integrates cell
    types from the prokaryotic, fungal, and eukaryotic organisms. As a core component
    of the OBO Foundry, the CL merges information contained in species-specific anatomical
    ontologies as well as referencing other OBO Foundry ontologies such as the Protein
    Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for
    the biological processes a cell type participates in. The CL is under continuous
    revision to expand representation of cell types and to better integrate with other
    biomedical ontologies.
  homepage: https://github.com/obophenotype/cell-ontology
  license: CC-BY-3.0
  name: Cell Ontology
  prefix: FAIRsharing.j9y503
  publications:
  - doi: 10.1186/1471-2105-12-6
    pubmed_id: 21208450
    title: Logical development of the cell ontology.
  - doi: 10.1186/s13326-016-0088-7
    pubmed_id: 27377652
    title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology
      interoperability.'
  repository: https://github.com/obophenotype/cell-ontology/blob/master/src/ontology/README.txt
  subjects:
  - Anatomy
  - Life Science
  - Cell Biology
go:
  homepage: http://cellontology.org
  name: Cell Type Ontology
  prefix: CL
mappings:
  aberowl: CL
  agroportal: CL
  biocontext: CL
  bioportal: CL
  cellosaurus: CL
  fairsharing: FAIRsharing.j9y503
  go: CL
  miriam: cl
  n2t: cl
  obofoundry: cl
  ols: cl
  ontobee: CL
  prefixcommons: cl
  wikidata: P7963
miriam:
  deprecated: false
  description: The Cell Ontology is designed as a structured controlled vocabulary
    for cell types. The ontology was constructed for use by the model organism and
    other bioinformatics databases, incorporating cell types from prokaryotes to mammals,
    and includes plants and fungi.
  homepage: https://www.ebi.ac.uk/ols/ontologies/cl
  id: '00000110'
  name: Cell Type Ontology
  namespaceEmbeddedInLui: true
  pattern: ^CL:\d{7}$
  prefix: cl
  sampleId: '0000232'
  uri_format: https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:$1
n2t:
  description: The Cell Ontology is designed as a structured controlled vocabulary
    for cell types. The ontology was constructed for use by the model organism and
    other bioinformatics databases, incorporating cell types from prokaryotes to mammals,
    and includes plants and fungi.
  example: '0000232'
  homepage: http://bioportal.bioontology.org/ontologies/CL
  name: Cell Type Ontology through BioPortal
  namespaceEmbeddedInLui: true
  pattern: ^CL:\d{7}$
  prefix: cl
  uri_format: http://purl.bioontology.org/ontology/CL/CL:$1
obofoundry:
  appears_in:
  - clo
  - ecao
  - go
  - mco
  - pcl
  - uberon
  - xpo
  - ehdaa2
  contact: addiehl@buffalo.edu
  contact.github: addiehl
  contact.label: Alexander Diehl
  contact.orcid: 0000-0001-9990-8331
  depends_on:
  - chebi
  - go
  - ncbitaxon
  - pato
  - pr
  - ro
  - uberon
  deprecated: false
  description: The Cell Ontology is a structured controlled vocabulary for cell types
    in animals.
  domain: anatomy and development
  download.obo: http://purl.obolibrary.org/obo/cl.obo
  download.owl: http://purl.obolibrary.org/obo/cl.owl
  homepage: https://obophenotype.github.io/cell-ontology/
  license: CC BY 4.0
  license.url: http://creativecommons.org/licenses/by/4.0/
  name: Cell Ontology
  preferredPrefix: CL
  prefix: cl
  publications:
  - id: https://www.ncbi.nlm.nih.gov/pubmed/27377652
    title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology
      interoperability.'
  repository: https://github.com/obophenotype/cell-ontology
  twitter: CellOntology
ols:
  description: An ontology of cell types.
  download: http://purl.obolibrary.org/obo/cl.owl
  name: Cell Ontology
  prefix: cl
  version: '2022-12-15'
  version.iri: http://purl.obolibrary.org/obo/cl/releases/2022-12-15/cl.owl
ontobee:
  library: Library
  name: Cell Ontology
  prefix: CL
pattern: ^\d{7}$
prefixcommons:
  bioportal: '1006'
  description: The Cell Ontology is designed as a structured controlled vocabulary
    for cell types. The ontology was constructed for use by the model organism and
    other bioinformatics databases, incorporating cell types from prokaryotes to mammals,
    and includes plants and fungi.
  example: CL:0000232
  homepage: http://lists.sourceforge.net/lists/listinfo/obo-cell-type
  keywords:
  - obo
  - cell
  name: Cell Ontology
  pattern: ^CL:\d+$
  prefix: cl
providers:
- code: cellxgene
  description: Explore single cell data through the CZ CELLxGENE portal
  homepage: https://onto.cellxgene-labs.prod.si.czi.technology
  name: CELLxGENE
  uri_format: https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/CL/CL:$1
publications:
- doi: 10.1186/s13326-016-0088-7
  pmc: PMC4932724
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
  year: 2016
- doi: 10.1186/1471-2105-12-6
  pmc: PMC3024222
  pubmed: '21208450'
  title: Logical development of the cell ontology.
  year: 2011
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
- doi: 10.1186/1471-2105-12-6
  pubmed: '21208450'
  title: Logical development of the cell ontology.
- doi: 10.1186/s13326-016-0088-7
  pubmed: '27377652'
  title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.'
wikidata:
  database: Q55118285
  description: ID in the Cell Ontology
  example:
  - CL_0000148
  - CL_0000232
  - CL_0000235
  - CL_0000540
  - CL_0002328
  homepage: http://www.ontobee.org/ontology/CL
  miriam: cl
  name: Cell Ontology ID
  pattern: ^CL_[0-9]{7}$
  prefix: P7963
  uri_format: http://purl.obolibrary.org/obo/$1
  uri_format_rdf:
  - http://purl.obolibrary.org/obo/$1