appears_in: []
contact:
  email: narcis.fernandez@gmail.com
  name: Narcis Fernandez-Fuentes
  orcid: 0000-0002-6421-1080
depends_on: []
deprecated: false
description: ArchDB is a compilation of structural classifications of loops extracted
  from known protein structures. The structural classification is based on the geometry
  and conformation of the loop. The geometry is defined by four internal variables
  and the type of regular flanking secondary structures, resulting in 10 different
  loop types. Loops in ArchDB have been classified using an improved version (Espadaler
  et al.) of the original ArchType program published in 1997 by Oliva et al.
example: '39421'
homepage: http://sbi.imim.es/archdb
keywords:
- classification
- life science
- protein
mappings:
  fairsharing: FAIRsharing.tp9z4q
  integbio: nbdc01795
  prefixcommons: archdb
name: ArchDB
preferred_prefix: archdb
prefix: archdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/archdb:$1
publications:
- doi: 10.1093/nar/gkt1189
  pmc: PMC3964960
  pubmed: '24265221'
  title: 'ArchDB 2014: structural classification of loops in proteins'
  year: 2013
- doi: 10.1093/nar/gkh002
  pmc: PMC308737
  pubmed: '14681390'
  title: 'ArchDB: automated protein loop classification as a tool for structural genomics'
  year: 2004
reviewer:
  email: cthoyt@gmail.com
  github: cthoyt
  name: Charles Tapley Hoyt
  orcid: 0000-0003-4423-4370
synonyms: []
uri_format: http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1
