{"aberowl": {"prefix": "aberowl", "name": "AberOWL", "description": "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets.", "homepage": "http://aber-owl.net", "example": "CHEBI", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "missing", "version": "present", "contact": "missing", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "import", "curates": false, "imports": false, "scope": "bio-ontologies", "comments": null, "accepts_external_contributions": false, "public_version_control": false, "review_team": "n/a", "status": "active"}, "download": "http://aber-owl.net/api/ontology/?format=json", "provider_uri_format": "http://aber-owl.net/ontology/$1", "resolver_uri_format": "http://aber-owl.net/ontology/$1/#/Browse/", "resolver_type": "lookup", "contact": {"name": "Ali Syed", "orcid": "0000-0002-5103-9058", "email": "ali.syed@kaust.edu.sa", "github": "aliraza995"}, "license": "See https://github.com/biopragmatics/bioregistry/issues/339"}, "agroportal": {"prefix": "agroportal", "name": "AgroPortal", "description": "A vocabulary and ontology repository for agronomy and related domains.", "homepage": "http://agroportal.lirmm.fr", "example": "ENVO", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "present", "version": "present", "contact": "present", "search": false, "fair": false, "fair_note": "The API for AgroPortal requires authentication"}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "agro-ontologies", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "private", "status": "active"}, "provider_uri_format": "http://agroportal.lirmm.fr/ontologies/$1", "contact": {"name": "Clement Jonquet", "orcid": "0000-0002-2404-1582", "email": "clement.jonquet@inrae.fr", "github": "jonquet"}, "license": "See https://github.com/biopragmatics/bioregistry/issues/336"}, "biocontext": {"prefix": "biocontext", "name": "BioContext", "description": "BioContext contains modular JSON-LD contexts for bioinformatics data.", "homepage": "https://github.com/prefixcommons/biocontext", "example": "CHEBI", "availability": {"name": "missing", "homepage": "missing", "description": "missing", "example": "missing", "pattern": "missing", "provider": "present", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "open-review", "curates": true, "imports": false, "scope": "internal", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "inferrable", "status": "active"}, "download": "https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld", "provider_uri_format": "https://bioregistry.io/metaregistry/biocontext/$1", "contact": {"name": "Chris Mungall", "orcid": "0000-0002-6601-2165", "email": "cjmungall@lbl.gov", "github": "cmungall"}, "license": "missing"}, "biolink": {"prefix": "biolink", "name": "Biolink Model Registry", "description": "A modeling paradigm-specific registry of prefixes and their URL expansions", "homepage": "https://github.com/biolink/biolink-model", "example": "doi", "availability": {"name": "required", "homepage": "missing", "description": "missing", "example": "missing", "pattern": "missing", "provider": "required", "alternate_providers": "missing", "synonyms": "missing", "license": "present", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "open-review", "curates": true, "imports": false, "scope": "internal", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "inferrable", "status": "active"}, "download": "https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml", "contact": {"name": "Deepak Unni", "orcid": "0000-0002-3583-7340", "email": "deepak.unni3@lbl.gov", "github": "deepakunni3"}, "bioregistry_prefix": "biolink", "license": "Apache 2.0", "short_name": "Biolink"}, "bioportal": {"prefix": "bioportal", "name": "BioPortal Prefixes", "description": "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry", "homepage": "https://bioportal.bioontology.org/", "example": "CHEBI", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "missing", "version": "required", "contact": "present", "search": false, "fair": false, "fair_note": "The API for BioPortal requires authentication"}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "bio-ontologies", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "private", "status": "active"}, "provider_uri_format": "https://bioportal.bioontology.org/ontologies/$1", "contact": {"name": "John Graybeal", "orcid": "0000-0001-6875-5360", "email": "jgraybeal@stanford.edu", "github": "graybeal"}, "bioregistry_prefix": "bioportal", "license": "See https://github.com/biopragmatics/bioregistry/issues/337", "short_name": "BioPortal"}, "bioregistry": {"prefix": "bioregistry", "name": "Bioregistry", "description": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.", "homepage": "https://bioregistry.io", "example": "chebi", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "required", "pattern": "present", "provider": "present", "alternate_providers": "present", "synonyms": "present", "license": "present", "version": "present", "contact": "present", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "open-review", "curates": true, "imports": true, "scope": "life sciences", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "public", "status": "active"}, "download": "https://bioregistry.io/api/registry/", "provider_uri_format": "https://bioregistry.io/registry/$1", "resolver_uri_format": "https://bioregistry.io/$1:$2", "resolver_type": "resolver", "contact": {"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}, "bioregistry_prefix": "bioregistry", "license": "CC0"}, "cellosaurus": {"prefix": "cellosaurus", "name": "Cellosaurus Registry", "description": "The set of prefixes used in the Cellosaurus resource", "homepage": "https://web.expasy.org/cellosaurus/", "example": "4DN", "availability": {"name": "required", "homepage": "required", "description": "missing", "example": "missing", "pattern": "missing", "provider": "required", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": "Data is available but requires custom parser"}, "governance": {"curation": "private", "curates": true, "imports": false, "scope": "internal", "comments": null, "accepts_external_contributions": false, "public_version_control": false, "review_team": "n/a", "status": "active"}, "contact": {"name": "Amos Bairoch", "orcid": "0000-0003-2826-6444", "email": "Amos.Bairoch@sib.swiss", "github": "AmosBairoch"}, "bioregistry_prefix": "cellosaurus.resource", "license": "CC BY 4.0", "short_name": "Cellosaurus"}, "cheminf": {"prefix": "cheminf", "name": "Chemical Information Ontology", "description": "Contains entries for various database identifiers", "homepage": "https://github.com/semanticchemistry/semanticchemistry", "example": "000140", "availability": {"name": "required", "homepage": "missing", "description": "missing", "example": "missing", "pattern": "missing", "provider": "missing", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": false, "fair_note": "No additional metadata included besides name in ontology"}, "governance": {"curation": "open-review", "curates": true, "imports": false, "scope": "chemistry", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "inferrable", "status": "unresponsive"}, "provider_uri_format": "https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http%3A%2F%2Fsemanticscience.org%2Fresource%2FCHEMINF_$1", "contact": {"name": "Egon Willighagen", "orcid": "0000-0001-7542-0286", "email": "egon.willighagen@gmail.com", "github": "egonw"}, "bioregistry_prefix": "cheminf", "license": "CC BY 3.0", "short_name": "CHEMINF"}, "cropoct": {"prefix": "cropoct", "name": "Crop Ontology Curation Tool", "description": "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms", "homepage": "https://www.cropontology.org", "example": "CO_010", "availability": {"name": "required", "homepage": "irrelevant*", "description": "missing", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "agro-ontologies", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "public", "status": "active"}, "download": "https://cropontology.org/metadata", "provider_uri_format": "https://www.cropontology.org/ontology/$1", "contact": {"name": "Elizabeth Arnaud", "orcid": "0000-0002-6020-5919", "email": "e.arnaud@cgiar.org", "github": "elizabetharnaud"}, "license": "CC BY 4.0", "short_name": "CropOCT"}, "ecoportal": {"prefix": "ecoportal", "name": "EcoPortal", "description": "The LifeWatch ERIC repository of semantic resources for the ecological domain.", "homepage": "http://ecoportal.lifewatch.eu", "example": "ALIENSPECIES", "availability": {"name": "required", "homepage": "present", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "present", "version": "present", "contact": "present", "search": false, "fair": false, "fair_note": "The API for EcoPortal requires authentication"}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "eco-ontologies", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "private", "status": "active"}, "provider_uri_format": "http://ecoportal.lifewatch.eu/ontologies/$1", "contact": {"name": "Xeni Kechagioglou", "orcid": "0000-0003-4494-839X", "email": "xeni.kechagioglou@lifewatch.eu", "github": "xeniacs"}, "license": "See https://github.com/biopragmatics/bioregistry/issues/338"}, "edam": {"prefix": "edam", "name": "EDAM Ontology", "description": "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use.", "homepage": " http://edamontology.org", "example": "1004", "availability": {"name": "required", "homepage": "missing", "description": "missing", "example": "missing", "pattern": "missing", "provider": "missing", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "community", "curates": true, "imports": false, "scope": "Life Sciences", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "inferrable", "status": "active"}, "download": "http://edamontology.org/EDAM.owl", "provider_uri_format": "http://edamontology.org/data_$1", "contact": {"name": "Matúš Kalaš", "orcid": "0000-0002-1509-4981", "email": "matus.kalas@uib.no", "github": "matuskalas"}, "bioregistry_prefix": "edam.data", "license": "CC BY 4.0-SA", "short_name": "EDAM"}, "fairsharing": {"prefix": "fairsharing", "name": "FAIRSharing", "description": "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies.", "homepage": "https://fairsharing.org/", "example": "FAIRsharing.62qk8w", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "missing", "pattern": "missing", "provider": "missing", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "required", "search": true, "fair": false, "fair_note": "The API for FAIRsharing requires authentication"}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "life sciences", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "private", "status": "active"}, "provider_uri_format": "https://fairsharing.org/$1", "contact": {"name": "Allyson Lister", "orcid": "0000-0002-7702-4495", "email": "allyson.lister@oerc.ox.ac.uk", "github": "allysonlister"}, "bioregistry_prefix": "fairsharing", "logo_url": "https://api.fairsharing.org/img/fairsharing-attribution.svg", "license": "CC BY-SA 4.0"}, "go": {"prefix": "go", "name": "Gene Ontology Registry", "description": "A database-specific registry supporting curation in the Gene Ontology", "homepage": "http://geneontology.org/", "example": "CHEBI", "availability": {"name": "required", "homepage": "present", "description": "present", "example": "present", "pattern": "present", "provider": "present", "alternate_providers": "present", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "open-review", "curates": true, "imports": false, "scope": "internal", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "inferrable", "status": "inactive"}, "download": "https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml", "contact": {"name": "Chris Mungall", "orcid": "0000-0002-6601-2165", "email": "cjmungall@lbl.gov", "github": "cmungall"}, "bioregistry_prefix": "go.resource", "license": "CC BY 4.0", "short_name": "GO"}, "hl7": {"prefix": "hl7", "name": "HL7 External Code Systems", "description": "HL7 External Code Systems are stored within the greater OID system", "homepage": "http://www.oid-info.com/get/2.16.840.1.113883.6", "example": "2.16.840.1.113883.6.88", "availability": {"name": "required", "homepage": "present", "description": "present", "example": "missing", "pattern": "missing", "provider": "missing", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "present", "search": false, "fair": false, "fair_note": "There are no download links nor API endpoints"}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "general", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "n/a", "status": "active"}, "provider_uri_format": "http://www.oid-info.com/get/$1", "contact": {"name": "W. Ted Klein", "orcid": "", "email": "ted@klein.com", "github": ""}, "bioregistry_prefix": "oid", "license": "See https://github.com/biopragmatics/bioregistry/issues/586", "short_name": "HL7"}, "miriam": {"prefix": "miriam", "name": "Identifiers.org", "description": "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession).", "homepage": "https://identifiers.org", "example": "chebi", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "required", "pattern": "required", "provider": "required", "alternate_providers": "present", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "opaque-review", "curates": true, "imports": false, "scope": "life sciences", "comments": null, "accepts_external_contributions": true, "public_version_control": false, "review_team": "private", "status": "unresponsive"}, "download": "https://registry.api.identifiers.org/resolutionApi/getResolverDataset", "provider_uri_format": "https://registry.identifiers.org/registry/$1", "resolver_uri_format": "https://identifiers.org/$1:$2", "resolver_type": "resolver", "contact": {"name": "Henning Hermjakob", "orcid": "0000-0001-8479-0262", "email": "hhe@ebi.ac.uk", "github": "hHermjakob"}, "bioregistry_prefix": "miriam", "logo_url": "https://identifiers.org/identifiers_logo.c7cbd962.png", "license": "CC BY 4.0"}, "n2t": {"prefix": "n2t", "name": "Name-to-Thing", "description": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org", "homepage": "https://n2t.net", "example": "chebi", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "required", "pattern": "required", "provider": "required", "alternate_providers": "present", "synonyms": "present", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "import", "curates": false, "imports": true, "scope": "life sciences", "comments": null, "accepts_external_contributions": false, "public_version_control": false, "review_team": "n/a", "status": "active"}, "download": "https://n2t.net/e/n2t_full_prefixes.yaml", "provider_uri_format": "https://n2t.net/$1:", "resolver_uri_format": "https://n2t.net/$1:$2", "resolver_type": "resolver", "contact": {"name": "John Kunze", "orcid": "0000-0001-7604-8041", "email": "jak@ucop.edu", "github": "jkunze"}, "bioregistry_prefix": "n2t", "logo_url": "https://n2t.net/e/images/n2t_net_logo.png", "license": "CC0", "short_name": "N2T"}, "ncbi": {"prefix": "ncbi", "name": "National Center for Biotechnology Information Registry", "description": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources", "homepage": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/", "example": "ECOCYC", "availability": {"name": "required", "homepage": "required", "description": "missing", "example": "required", "pattern": "missing", "provider": "missing", "alternate_providers": "missing", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": false, "fair_note": "Requires web scraping"}, "governance": {"curation": "private", "curates": true, "imports": false, "scope": "internal", "comments": null, "accepts_external_contributions": false, "public_version_control": false, "review_team": "n/a", "status": "inactive"}, "contact": {"name": "GenBank Support", "orcid": null, "email": "gb-admin@ncbi.nlm.nih.gov", "github": null}, "bioregistry_prefix": "ncbi.resource", "license": "See https://github.com/biopragmatics/bioregistry/issues/342", "short_name": "NCBI"}, "obofoundry": {"prefix": "obofoundry", "name": "OBO Foundry", "description": "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate.", "homepage": "http://www.obofoundry.org/", "example": "chebi", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "missing", "pattern": "missing", "provider": "missing", "alternate_providers": "missing", "synonyms": "missing", "license": "required", "version": "missing", "contact": "required", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "open-review", "curates": true, "imports": false, "scope": "bio-ontologies", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "public", "status": "active"}, "download": "http://www.obofoundry.org/registry/ontologies.yml", "provider_uri_format": "http://www.obofoundry.org/ontology/$1", "resolver_uri_format": "http://purl.obolibrary.org/obo/$1_$2", "resolver_type": "resolver", "contact": {"name": "Chris Mungall", "orcid": "0000-0002-6601-2165", "email": "cjmungall@lbl.gov", "github": "cmungall"}, "logo_url": "https://obofoundry.org/images/foundrylogo.png", "license": "CC0"}, "ols": {"prefix": "ols", "name": "Ontology Lookup Service", "description": "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. ", "homepage": "https://www.ebi.ac.uk/ols", "example": "chebi", "availability": {"name": "required", "homepage": "present", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "required", "version": "present", "contact": "present", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "import", "curates": false, "imports": false, "scope": "bio-ontologies", "comments": "Accepts suggestions through the OLS issue tracker at https://github.com/EBISPOT/OLS/issues", "accepts_external_contributions": true, "public_version_control": false, "review_team": "inferrable", "status": "active"}, "provider_uri_format": "https://www.ebi.ac.uk/ols/ontologies/$1", "contact": {"name": "Henriette Harmse", "orcid": "0000-0001-7251-9504", "email": "henriette007@ebi.ac.uk", "github": "henrietteharmse"}, "logo_url": "https://www.ebi.ac.uk/ols/img/OLS_logo_2017.png", "license": "See https://github.com/biopragmatics/bioregistry/issues/340", "short_name": "OLS"}, "ontobee": {"prefix": "ontobee", "name": "OntoBee", "description": "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis.", "homepage": "http://www.ontobee.org/", "example": "AGRO", "availability": {"name": "required", "homepage": "required", "description": "required", "example": "irrelevant", "pattern": "missing", "provider": "irrelevant", "alternate_providers": "irrelevant", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "required", "search": false, "fair": false, "fair_note": "No API available, data download requires web scraping"}, "governance": {"curation": "import", "curates": false, "imports": false, "scope": "bio-ontologies", "comments": null, "accepts_external_contributions": false, "public_version_control": false, "review_team": "n/a", "status": "active"}, "provider_uri_format": "http://www.ontobee.org/ontology/$1", "resolver_uri_format": "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2", "resolver_type": "lookup", "contact": {"name": "Yongqun Oliver He", "orcid": "0000-0001-9189-9661", "email": "yongqunh@med.umich.edu", "github": "yongqunh"}, "license": "See https://github.com/biopragmatics/bioregistry/issues/341"}, "prefixcc": {"prefix": "prefixcc", "name": "Prefix.cc", "description": "A web-developer centric archive of prefixes and URI prefixes", "homepage": "https://prefix.cc/", "example": "foaf", "availability": {"name": "missing", "homepage": "missing", "description": "missing", "example": "missing", "pattern": "missing", "provider": "required", "alternate_providers": "present", "synonyms": "missing", "license": "missing", "version": "missing", "contact": "missing", "search": false, "fair": true, "fair_note": null}, "governance": {"curation": "community", "curates": true, "imports": false, "scope": "general", "comments": null, "accepts_external_contributions": true, "public_version_control": true, "review_team": "n/a", "status": "active"}, "download": "https://prefix.cc/context.jsonld", "provider_uri_format": "https://prefix.cc/$1", "contact": {"name": "Richard Cyganiak", "orcid": "0000-0001-9950-5209", "email": "richard@cyganiak.de", "github": "cygri"}, "license": "CC0"}, "prefixcommons": {"prefix": "prefixcommons", "name": "Prefix Commons", "description": "A registry of commonly used prefixes in the life sciences and linked data", "homepage": "https://prefixcommons.org", "example": "CHEBI", "availability": {"name": "required", "homepage": "present", "description": "present", "example": "present", "pattern": "present", "provider": "present", "alternate_providers": "required", "synonyms": "present", "license": "missing", "version": "missing", "contact": "missing", "search": true, "fair": true, "fair_note": null}, "governance": {"curation": "community", "curates": true, "imports": false, "scope": "life 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