'0000001':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: 'These resources were listed in [Sharing biological data: why, when,
    and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel
    curation of the Bioregistry which included the addition of GenBank, Panorama Public,
    EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when
    possible.'
  identifier: '0000001'
  name: 'Resources mentioned in "Sharing biological data: why, when, and how"'
  resources:
  - biostudies
  - bmrb
  - cellimage
  - ega.dataset
  - ega.study
  - emdb
  - empiar
  - genbank
  - geo
  - idr
  - insdc.sra
  - massive
  - panorama
  - pdb
  - peptideatlas.dataset
  - pride
  - ssbd.dataset
  - ssbd.project
'0000002':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  context: semweb
  description: Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml)
    in BioContext.
  identifier: '0000002'
  name: Semantic Web Context
  resources:
  - ac
  - bibo
  - dc
  - dcat
  - dcterms
  - dctypes
  - faldo
  - foaf
  - idot
  - oa
  - oboinowl
  - oslc
  - owl
  - pav
  - prov
  - qb
  - qudt
  - rdf
  - rdfs
  - schema
  - shacl
  - shex
  - skos
  - skosxl
  - swrl
  - vann
  - void
  - xsd
'0000003':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: The data sources used in xrefs in the ChEBI ontology. More information
    in the "Data Sources" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx).
  identifier: '0000003'
  name: ChEBI Data Sources
  resources:
  - chebi
  - chemidplus
  - come
  - drugbank
  - ecmdb
  - eurofir
  - google.patent
  - hmdb
  - kegg.compound
  - kegg.drug
  - kegg.glycan
  - knapsack
  - lincs.smallmolecule
  - lipidmaps
  - metacyc.compound
  - molbase.sheffield
  - pdb
  - pdb-ccd
  - pesticides
  - resid
  - smid
  - umbbd.compound
  - webelements
  - ymdb
'0000004':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: This collection contains the many prefixes for the different repackaging
    of the International Classification of Diseases (ICD) throughout its major revisions.
  identifier: '0000004'
  name: International Classifications of Diseases
  resources:
  - icd10
  - icd10cm
  - icd10pcs
  - icd11
  - icd9
  - icd9cm
  - icdo
'0000005':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: This collection contains various brain atlases from the Allen Institute.
  identifier: '0000005'
  name: Allen Institute Ontologies
  resources:
  - dhba
  - dmba
  - hba
  - mba
  - pba
'0000006':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  context: spar
  description: The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies)
    are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects
    of the publishing process to be described in machine-readable metadata statements,
    encoded using RDF.
  identifier: '0000006'
  name: SPAR Ontologies
  resources:
  - bido
  - biro
  - c4o
  - cito
  - datacite
  - deo
  - doco
  - fabio
  - frapo
  - pso
  - puro
  - pwo
  - scoro
'0000007':
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: Prefixes useful in annotating documentation provenance.
  identifier: '0000007'
  name: Publication Provenance Prefixes
  resources:
  - arxiv
  - doi
  - pmc
  - pubmed
0000008:
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: Prefixes exported for the epidemiology domain knowledge graph in the
    ASKEM project.
  identifier: 0000008
  name: ASKEM Epidemiology Prefixes
  resources:
  - bfo
  - caro
  - doi
  - doid
  - dso
  - hp
  - ido
  - oae
  - oboinowl
  - ovae
  - owl
  - pmc
  - pubmed
  - rdfs
  - ro
  - symp
  - trans
  - vo
0000009:
  authors:
  - email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: 'Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html)
    page. This list is mostly complete. Notably, some entries that have not been curated:


    - HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))

    - [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not
    find information about the terminology or its entries

    - [ICPC](http://www.ph3c.org/) (International Classification of Primary Care)
    _same_

    - [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number)
    _same_

    - [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since
    that appears to be part of a larger ISO standard vocabulary that needs further
    investigation'
  identifier: 0000009
  name: FHIR External Terminologies
  resources:
  - atcc
  - clinicaltrials
  - clinvar
  - cosmic
  - cpt
  - cvx
  - dbsnp
  - dicom
  - dsm5
  - ensembl
  - hc.din
  - hc.npn
  - hgnc
  - hl7.v2codesystem
  - hl7.v3codesystem
  - icd10
  - icd9
  - icf
  - ietf.language
  - imgt.hla
  - iso.3166
  - loinc
  - lrg
  - ncit
  - ndc
  - ndfrt
  - nucc.taxonomy
  - omim
  - pharmgkb.gene
  - pubmed
  - radlex
  - refseq
  - rxnorm
  - snomedct
  - so
  - ucum
  - unii