{"0000001": {"identifier": "0000001", "name": "Resources mentioned in \"Sharing biological data: why, when, and how\"", "description": "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.", "resources": ["biostudies", "bmrb", "cellimage", "ega.dataset", "ega.study", "emdb", "empiar", "genbank", "geo", "idr", "insdc.sra", "massive", "panorama", "pdb", "peptideatlas.dataset", "pride", "ssbd.dataset", "ssbd.project"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000002": {"identifier": "0000002", "name": "Semantic Web Context", "description": "Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) in BioContext.", "resources": ["ac", "bibo", "dc", "dcat", "dcterms", "dctypes", "faldo", "foaf", "idot", "oa", "oboinowl", "oslc", "owl", "pav", "prov", "qb", "qudt", "rdf", "rdfs", "schema", "shacl", "shex", "skos", "skosxl", "swrl", "vann", "void", "xsd"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}], "context": "semweb"}, "0000003": {"identifier": "0000003", "name": "ChEBI Data Sources", "description": "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx).", "resources": ["chebi", "chemidplus", "come", "drugbank", "ecmdb", "eurofir", "google.patent", "hmdb", "kegg.compound", "kegg.drug", "kegg.glycan", "knapsack", "lincs.smallmolecule", "lipidmaps", "metacyc.compound", "molbase.sheffield", "pdb", "pdb-ccd", "pesticides", "resid", "smid", "umbbd.compound", "webelements", "ymdb"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000004": {"identifier": "0000004", "name": "International Classifications of Diseases", "description": "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions.", "resources": ["icd10", "icd10cm", "icd10pcs", "icd11", "icd9", "icd9cm", "icdo"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000005": {"identifier": "0000005", "name": "Allen Institute Ontologies", "description": "This collection contains various brain atlases from the Allen Institute.", "resources": ["dhba", "dmba", "hba", "mba", "pba"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000006": {"identifier": "0000006", "name": "SPAR Ontologies", "description": "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF.", "resources": ["bido", "biro", "c4o", "cito", "datacite", "deo", "doco", "fabio", "frapo", "pso", "puro", "pwo", "scoro"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}], "context": "spar"}, "0000007": {"identifier": "0000007", "name": "Publication Provenance Prefixes", "description": "Prefixes useful in annotating documentation provenance.", "resources": ["arxiv", "doi", "pmc", "pubmed"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000008": {"identifier": "0000008", "name": "ASKEM Epidemiology Prefixes", "description": "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project.", "resources": ["bfo", "caro", "doi", "doid", "dso", "hp", "ido", "oae", "oboinowl", "ovae", "owl", "pmc", "pubmed", "rdfs", "ro", "symp", "trans", "vo"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}, "0000009": {"identifier": "0000009", "name": "FHIR External Terminologies", "description": "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation", "resources": ["atcc", "clinicaltrials", "clinvar", "cosmic", "cpt", "cvx", "dbsnp", "dicom", "dsm5", "ensembl", "hc.din", "hc.npn", "hgnc", "hl7.v2codesystem", "hl7.v3codesystem", "icd10", "icd9", "icf", "ietf.language", "imgt.hla", "iso.3166", "loinc", "lrg", "ncit", "ndc", "ndfrt", "nucc.taxonomy", "omim", "pharmgkb.gene", "pubmed", "radlex", "refseq", "rxnorm", "snomedct", "so", "ucum", "unii"], "authors": [{"name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370", "email": "cthoyt@gmail.com", "github": "cthoyt"}]}}