{"configurations":[{"id":"ado","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/ado.owl","creator":["Alpha Tom Kodamullil"],"preferredPrefix":"ADO","title":"Alzheimer's Disease Ontology","description":"Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining. Licensed under CC-BY-4.0.","uri":"https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO","homepage":"https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO","mailing_list":"alpha.tom.kodamullil@scai.fraunhofer.de","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/ADO_"]},{"id":"bfo","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/bfo.obo","creator":["Barry Smith"],"preferredPrefix":"BFO","title":"Basic Formal Ontology","description":"The upper level ontology upon which OBO Foundry ontologies are built. 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Licensed under CC-BY-4.0.","uri":"http://www.brenda-enzymes.org","homepage":"http://www.brenda-enzymes.org","mailing_list":"c.dudek@tu-braunschweig.de","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/BTO_"]},{"id":"chebi","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/chebi.obo","creator":["Adnan Malik"],"preferredPrefix":"CHEBI","title":"Chemical Entities of Biological Interest","description":"Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. 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The data is abstracted and curated from the primary scientific literature. Licensed under CC-BY-SA-3.0.","uri":"https://www.ebi.ac.uk/chembldb/","homepage":"https://www.ebi.ac.uk/chembldb/","mailing_list":"chembl-help@ebi.ac.uk","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://rdf.ebi.ac.uk/resource/chembl/molecule/"]},{"id":"civic.gid","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.obo","creator":["Malachi Griffith"],"preferredPrefix":"civic.gid","title":"CIViC gene","description":"A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis Licensed under CC0-1.0.","uri":"https://civicdb.org/","homepage":"https://civicdb.org/","mailing_list":"help@civicdb.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://civicdb.org/links/gene/"]},{"id":"clinicaltrials","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.obo.gz","creator":["ClinicalTrials.gov Helpdesk"],"preferredPrefix":"clinicaltrials","title":"ClinicalTrials.gov","description":"ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. 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Licensed under CC0-1.0.","uri":"https://www.ebi.ac.uk/complexportal","homepage":"https://www.ebi.ac.uk/complexportal","mailing_list":"sbalu@ebi.ac.uk","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.ebi.ac.uk/complexportal/complex/"]},{"id":"cpt","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/cpt/cpt.obo","creator":["American Medical Association"],"preferredPrefix":"cpt","title":"Current Procedural Terminology","description":"Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]","uri":"https://www.aapc.com","homepage":"https://www.aapc.com","mailing_list":"Intellectual.PropertyServices@ama-assn.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.aapc.com/codes/cpt-codes/"]},{"id":"cvx","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/cvx/cvx.obo","creator":["IIS Helpdesk"],"preferredPrefix":"cvx","title":"Vaccine administered code set","description":"The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records.","uri":"https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx","homepage":"https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx","mailing_list":"iisinfo@cdc.gov","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://biopragmatics.github.io/providers/cvx/"]},{"id":"depmap","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/depmap/depmap.obo","creator":["Francisca Vazquez"],"preferredPrefix":"depmap","title":"DepMap Cell Lines","description":"Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells. Licensed under CC-BY-4.0.","uri":"https://depmap.org/portal","homepage":"https://depmap.org/portal","mailing_list":"vazquez@broadinstitute.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://depmap.org/portal/cell_line/"]},{"id":"dhba","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"DHBA","title":"Developing Human Brain Atlas","description":"A controlled vocabulary to support the study of transcription in the developing human brain","uri":"https://www.brainspan.org/","homepage":"https://www.brainspan.org/","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://purl.brain-bican.org/ontology/dhbao/DHBA_"]},{"id":"dmba","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"DMBA","title":"Developing Mouse Brain Atlas","description":"A controlled vocabulary to support the study of transcription in the developing mouse brain","uri":"https://developingmouse.brain-map.org/","homepage":"https://developingmouse.brain-map.org/","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://purl.brain-bican.org/ontology/dmbao/DMBA_"]},{"id":"doid","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo","creator":["Lynn Schriml"],"preferredPrefix":"DOID","title":"Human Disease Ontology","description":"The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Licensed under CC0-1.0.","uri":"https://disease-ontology.org","homepage":"https://disease-ontology.org","mailing_list":"lynn.schriml@gmail.com","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/DOID_"]},{"id":"drugcentral","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/drugcentral/drugcentral.obo","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"drugcentral","title":"Drug Central","description":"DrugCentral  provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action. Licensed under CC-BY-SA-4.0.","uri":"http://drugcentral.org","homepage":"http://drugcentral.org","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://drugcentral.org/drugcard/"]},{"id":"duo","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/duo.owl","creator":["Melanie Courtot"],"preferredPrefix":"DUO","title":"Data Use Ontology","description":"DUO is an ontology which represent data use conditions. Licensed under CC-BY-4.0.","uri":"https://github.com/EBISPOT/DUO","homepage":"https://github.com/EBISPOT/DUO","mailing_list":"mcourtot@gmail.com","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/DUO_"]},{"id":"ec","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/ec/ec.obo","creator":["Kristian Axelsen"],"preferredPrefix":"EC","title":"Enzyme Nomenclature","description":"The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.\n\nThe Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).\n\nThere are few notable resources providing access to the Enzyme Nomenclature:\n\n<table class=\"table table-striped\"><thead><tr><th>Website</th><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td><a href=\"https://www.enzyme-database.org\">https://www.enzyme-database.org</a></td><td>This is the resource officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td><a href=\"https://iubmb.qmul.ac.uk/enzyme\">https://iubmb.qmul.ac.uk/enzyme</a></td><td>This is a web-based version of the <a href=\"https://archive.org/details/enzymenomenclatu0000inte_d6c2\">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td><a href=\"https://www.ebi.ac.uk/intenz\">https://www.ebi.ac.uk/intenz</a></td><td>Shutdown in 2024</td></tr><tr><td>ExPaSy</td><td><a href=\"https://enzyme.expasy.org\">https://enzyme.expasy.org</a></td></tr><tr><td>EnzymePortal</td><td><a href=\"https://www.ebi.ac.uk/enzymeportal\">https://www.ebi.ac.uk/enzymeportal</a></td><td></td></tr></tbody></table> Licensed under CC-BY-4.0.","uri":"https://www.enzyme-database.org/","homepage":"https://www.enzyme-database.org/","mailing_list":"kristian.axelsen@sib.swiss","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://purl.expasy.org/enzyme/EC/"]},{"id":"edam","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo","creator":["Matúš Kalaš"],"preferredPrefix":"edam","title":"EDAM Ontology","description":"EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications). Licensed under CC BY-SA 4.0.","uri":"http://edamontology.org","homepage":"http://edamontology.org","mailing_list":"matus.kalas@uib.no","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://edamontology.org/"]},{"id":"eupath","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/eupath.owl","creator":["Jie Zheng"],"preferredPrefix":"EUPATH","title":"VEuPathDB ontology","description":"The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available. 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Licensed under CC-BY-4.0.","uri":"https://www.orpha.net","homepage":"https://www.orpha.net","mailing_list":"marc.hanauer@inserm.fr","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.orpha.net/ORDO/Orphanet_"]},{"id":"pba","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"PBA","title":"Primate Brain Atlas","description":"A controlled vocabulary to support the study of transcription in the primate brain","uri":"https://www.blueprintnhpatlas.org/","homepage":"https://www.blueprintnhpatlas.org/","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://biopragmatics.github.io/providers/pba/"]},{"id":"peco","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo","creator":["Pankaj Jaiswal"],"preferredPrefix":"PECO","title":"Plant Experimental Conditions Ontology","description":"A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments. Licensed under CC-BY-4.0.","uri":"http://planteome.org/","homepage":"http://planteome.org/","mailing_list":"jaiswalp@science.oregonstate.edu","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/PECO_"]},{"id":"pfam","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pfam/pfam.obo","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"pfam","title":"Pfam protein family","description":"The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored. Licensed under CC0-1.0.","uri":"https://www.ebi.ac.uk/interpro/","homepage":"https://www.ebi.ac.uk/interpro/","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.ebi.ac.uk/interpro/entry/pfam/"]},{"id":"pfam.clan","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pfam.clan/pfam.clan.obo","creator":["Alex Bateman"],"preferredPrefix":"pfam.clan","title":"Pfam protein clan","description":"Higher order grouping of Pfam families Licensed under CC0-1.0.","uri":"https://pfam.xfam.org","homepage":"https://pfam.xfam.org","mailing_list":"agb@ebi.ac.uk","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.ebi.ac.uk/interpro/set/pfam/"]},{"id":"pharmgkb.disease","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.obo","creator":["Teri E Klein"],"preferredPrefix":"pharmgkb.disease","title":"PharmGKB Disease","description":"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. 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Licensed under CC-BY-SA-4.0.","uri":"http://www.pharmgkb.org/","homepage":"http://www.pharmgkb.org/","mailing_list":"feedback@clinpgx.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.pharmgkb.org/disease/"]},{"id":"pharmgkb.drug","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.obo","creator":["Teri E Klein"],"preferredPrefix":"pharmgkb.drug","title":"PharmGKB Drug","description":"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. 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Licensed under CC-BY-SA-4.0.","uri":"http://www.pharmgkb.org/","homepage":"http://www.pharmgkb.org/","mailing_list":"feedback@clinpgx.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.pharmgkb.org/drug/"]},{"id":"pharmgkb.gene","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo","creator":["Teri E Klein"],"preferredPrefix":"pharmgkb.gene","title":"PharmGKB Gene","description":"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. 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Licensed under CC-BY-SA-4.0.","uri":"http://www.pharmgkb.org/","homepage":"http://www.pharmgkb.org/","mailing_list":"feedback@clinpgx.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.pharmgkb.org/gene/"]},{"id":"pharmgkb.pathways","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.obo","creator":["Teri E Klein"],"preferredPrefix":"pharmgkb.pathways","title":"PharmGKB pathway","description":"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. 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Licensed under CC-BY-SA-4.0.","uri":"http://www.pharmgkb.org/","homepage":"http://www.pharmgkb.org/","mailing_list":"feedback@clinpgx.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.pharmgkb.org/pathway/"]},{"id":"pombase","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pombase/pombase.obo","creator":["Valerie Wood"],"preferredPrefix":"pombase","title":"PomBase","description":"PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets. Licensed under CC-BY-4.0.","uri":"https://www.pombase.org/","homepage":"https://www.pombase.org/","mailing_list":"vw253@cam.ac.uk","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.pombase.org/gene/"]},{"id":"radlex","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"http://aber-owl.net/media/ontologies/RADLEX/37/radlex.owl","creator":["Radiological Society of North America"],"preferredPrefix":"radlex","title":"RSNA Informatics RadLex","description":"A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project. Licensed under http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/RadLex_License_Agreement_and_Terms_of_Use_V2_Final.pdf.","uri":"https://radlex.org","homepage":"https://radlex.org","mailing_list":"radlex-feedback@lists.rsna.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://radlex.org/RID/"]},{"id":"reactome","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/reactome/reactome.obo","creator":["Peter D'Eustachio"],"preferredPrefix":"reactome","title":"Reactome","description":"The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology. 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This collection references genes. 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