{"configurations":[{"id":"clinicaltrials","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.obo.gz","creator":["ClinicalTrials.gov Helpdesk"],"preferredPrefix":"clinicaltrials","title":"ClinicalTrials.gov","description":"ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries Licensed under https://clinicaltrials.gov/about-site/terms-conditions#availability.","uri":"https://clinicaltrials.gov/","homepage":"https://clinicaltrials.gov/","mailing_list":"register@clinicaltrials.gov","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.clinicaltrials.gov/study/"]},{"id":"cpt","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/cpt/cpt.obo","creator":["American Medical Association"],"preferredPrefix":"cpt","title":"Current Procedural Terminology","description":"Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]","uri":"https://www.aapc.com","homepage":"https://www.aapc.com","mailing_list":"Intellectual.PropertyServices@ama-assn.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.aapc.com/codes/cpt-codes/"]},{"id":"cvx","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/cvx/cvx.obo","creator":["IIS Helpdesk"],"preferredPrefix":"cvx","title":"Vaccine administered code set","description":"The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records.","uri":"https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx","homepage":"https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx","mailing_list":"iisinfo@cdc.gov","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://biopragmatics.github.io/providers/cvx/"]},{"id":"dicom","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"http://aber-owl.net/media/ontologies/DICOM/2/dicom.owl","creator":["David Clunie"],"preferredPrefix":"dicom","title":"Healthcare metadata - DICOM ontology","description":"Ontology for healthcare metadata - especially metadata found in DICOM files (Digital Imaging and Communications in Medicine, see http://dicom.nema.org/). Author: Michael Brunnbauer, Bonubase GmbH (www.bonubase.com). The author's email address is brunni@netestate.de. See http://purl.org/healthcarevocab/v1help for explanations.","uri":"http://medical.nema.org/","homepage":"http://medical.nema.org/","mailing_list":"dclunie@dclunie.com","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://dicom.nema.org/resources/ontology/DCM/"]},{"id":"hgnc","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/hgnc/hgnc.obo","creator":["Elspeth Bruford","Susan Tweedie"],"preferredPrefix":"hgnc","title":"HUGO Gene Nomenclature Committee","description":"The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene.  All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database. Licensed under CC0-1.0.","uri":"http://www.genenames.org","homepage":"http://www.genenames.org","mailing_list":"hgnc@genenames.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"]},{"id":"icd10","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/icd10/icd10.obo","creator":["World Health Organization"],"preferredPrefix":"icd10","title":"International Classification of Diseases, 10th Revision","description":"The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States. Licensed under https://cdn.who.int/media/docs/default-source/publishing-policies/copyright/who-faq-licensing-icd-10.pdf.","uri":"https://icd.who.int/browse10","homepage":"https://icd.who.int/browse10","mailing_list":"info@who.int","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://icd.who.int/browse10/2019/en#/"]},{"id":"icf","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"http://aber-owl.net/media/ontologies/ICF/3/icf.owl","creator":["The World Health Organization"],"preferredPrefix":"icf","title":"International Classification of Functioning, Disability and Health","description":"The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels.","uri":"https://icd.who.int/dev11/l-icf/en","homepage":"https://icd.who.int/dev11/l-icf/en","mailing_list":"info@who.int","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://icd.who.int/dev11/l-icf/en#/http://id.who.int/icd/entity/"]},{"id":"ncit","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/ncit.obo","creator":["NCI Thesaurus Mailbox"],"preferredPrefix":"NCIT","title":"NCI Thesaurus","description":"NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code. Licensed under CC-BY-4.0.","uri":"https://github.com/ncit-obo-org/ncit-obo-edition","homepage":"https://github.com/ncit-obo-org/ncit-obo-edition","mailing_list":"ncithesaurus@mail.nih.gov","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/NCIT_"]},{"id":"pharmgkb.gene","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo","creator":["Teri E Klein"],"preferredPrefix":"pharmgkb.gene","title":"PharmGKB Gene","description":"The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. Licensed under CC-BY-SA-4.0.","uri":"http://www.pharmgkb.org/","homepage":"http://www.pharmgkb.org/","mailing_list":"feedback@clinpgx.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://www.pharmgkb.org/gene/"]},{"id":"radlex","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"http://aber-owl.net/media/ontologies/RADLEX/37/radlex.owl","creator":["Radiological Society of North America"],"preferredPrefix":"radlex","title":"RSNA Informatics RadLex","description":"A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project. Licensed under http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/RadLex_License_Agreement_and_Terms_of_Use_V2_Final.pdf.","uri":"https://radlex.org","homepage":"https://radlex.org","mailing_list":"radlex-feedback@lists.rsna.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://radlex.org/RID/"]},{"id":"so","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo","creator":["Karen Eilbeck"],"preferredPrefix":"SO","title":"Sequence types and features ontology","description":"The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data. Licensed under CC-BY-4.0.","uri":"http://www.sequenceontology.org/","homepage":"http://www.sequenceontology.org/","mailing_list":"keilbeck@genetics.utah.edu","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/SO_"]}],"missing":["atcc","clinvar.variation","cosmic.gene","dbsnp","dsm5","ensembl","hc.din","hc.npn","hl7.v2codesystem","hl7.v3codesystem","icd9","ietf.language","imgt.hla","iso.3166","loinc","lrg","ndc","ndfrt","nucc.taxonomy","omim","pubmed","refseq","rxnorm","snomedct","ucum","unii"]}