Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.

Prefix
rgd
Alternative Prefixes
RGD
Keywords
behavior biomedical science comparative genomics congenic rat data analysis service disease dna est faseb list function gene genetic genome genomic genomics genotype gold standard human immunology inbred rat strain knockout map marker model organism molecular medicine mouse mutant ontology organism supplier pathway phenomics phenotype physiology proteomics qtl quantitative genetics rat recombinant inbred rat sequence strain translational medicine variation veterinary medicine
License
CC-BY-4.0
Links
Homepage
Contact
Jennifer R Smith   0000-0002-6443-9376
Pattern for Local Unique Identifiers

Local identifiers in Rat Genome Database should match this regular expression:
^\d{4,}$

Example Local Unique Identifier
7499841   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Rat Genome Database should match this regular expression:
^rgd:\d{4,}$

Example CURIE
rgd:7499841
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry Rat Genome Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 18 mappings to external registries for this resource with 8 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl RGD
BioContext biocontext RGD
BioPortal BioPortal Prefixes logo bioportal RGD
Cellosaurus Cellosaurus Registry logo cellosaurus RGD
EDAM EDAM Ontology logo edam 2620
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.pfg82t
GO Gene Ontology Registry logo go RGD
Integbio Integbio logo integbio nbdc00188
Identifiers.org Identifiers.org logo miriam rgd
N2T Name-to-Thing logo n2t rgd
NCBI National Center for Biotechnology Information Registry logo ncbi RGD
Pathguide Pathguide logo pathguide 267
Prefix Commons Prefix Commons logo prefixcommons rgd
re3data Registry of Research Data Repositories logo re3data r3d100010417
RRID Research Resource Identifiers logo rrid RGD
TogoID togoid Rgd
UniProt UniProt Cross-ref database logo uniprot DB-0091
Wikidata Wikidata Property logo wikidata P3853
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 7499841 is used to demonstrate the providers available for Rat Genome Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Rat Genome Database rgd http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=7499841
Bioregistry bioregistry https://bioregistry.io/rgd:7499841
Identifiers.org miriam https://identifiers.org/rgd:7499841
Name-to-Thing n2t https://n2t.net/rgd:7499841
Research Resource Identifiers rrid https://scicrunch.org/resolver/RRID:RGD_7499841
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
agr RGD through the Alliance of Genome Resources https://www.alliancegenome.org/gene/RGD:7499841
bio2rdf Bio2RDF http://bio2rdf.org/rgd:7499841