The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.

Prefix
insdc.sra
Links
Homepage
Contact
Missing Contact
Pattern
^[SED]R[APRSXZ]\d+$
Namespace in Pattern
False
Example Identifier
SRX000007   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for insdc.sra.

Registry Name Metaprefix Metaidentifier
FAIRSharing fairsharing FAIRsharing.g7t2hv
Identifiers.org miriam insdc.sra
Name-to-Thing n2t insdc.sra
Prefix Commons prefixcommons INSDC.SRA
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE insdc.sra:SRX000007 is used to demonstrate the provides available for insdc.sra. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Sequence Read Archive insdc.sra https://www.ncbi.nlm.nih.gov/sra/SRX000007
Bioregistry bioregistry https://bioregistry.io/insdc.sra:SRX000007
Identifiers.org miriam https://identifiers.org/insdc.sra:SRX000007
Name-to-Thing n2t https://n2t.net/insdc.sra:SRX000007
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
ebi European Nucleotide Archive (ENA) https://www.ebi.ac.uk/ena/data/view/SRX000007
ddbj DDBJ Sequence Read Archive (DRA) http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=SRX000007