Allotrope Merged Ontology Suite
The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.
license: http://purl.allotrope.org/voc/creative-commons-attribution-license
rights: http://purl.allotrope.org/voc/copyright
Allotrope Merged Ontology Suite
The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.
license: http://purl.allotrope.org/voc/creative-commons-attribution-license
rights: http://purl.allotrope.org/voc/copyright
| Website | Homepage | Notes |
|---|---|---|
| ExplorEnz | https://www.enzyme-database.org | This is the resource officially recommended by IUBMB |
| IUBMB (via by Queen Mary) | https://iubmb.qmul.ac.uk/enzyme | This is a web-based version of the 1992 publication. |
| IntEnz | https://www.ebi.ac.uk/intenz | Shutdown in 2024 |
| ExPaSy | https://enzyme.expasy.org | |
| EnzymePortal | https://www.ebi.ac.uk/enzymeportal |
2.3.-.-) and without dashes (e.g., 2.3). This means you may have to do post-processing of EC identifiers in data integration scenarios.","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"EC","mastodon":null,"github_request_issue":null,"logo":"https://www.enzyme-database.org/images/banner_5.gif","miriam":{"description":"The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.","examples":["1.1.1.1"],"extras":{"miriam_id":"00000004","namespaceEmbeddedInLui":false},"homepage":"http://www.enzyme-database.org/","name":"Enzyme Nomenclature","pattern":"^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$","prefix":"ec-code","providers":[{"code":"expasy","description":"Enzyme nomenclature database, ExPASy (Expert Protein Analysis System)","homepage":"https://enzyme.expasy.org/","name":"Enzyme nomenclature database, ExPASy (Expert Protein Analysis System)","uri_format":"https://enzyme.expasy.org/EC/$1"},{"code":"","description":"KEGG Ligand Database for Enzyme Nomenclature","homepage":"https://www.genome.jp/dbget-bin/www_bfind?enzyme","name":"KEGG Ligand Database for Enzyme Nomenclature","uri_format":"https://www.genome.jp/dbget-bin/www_bget?ec:$1"}],"status":"active","uri_format":"http://www.enzyme-database.org/query.php?ec=$1"},"n2t":{"description":"The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.","examples":["1.1.1.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intenz/","name":"IntEnZ (Integrated relational Enzyme database)","pattern":"^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$","prefix":"ec-code","uri_format":"https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"},"prefixcommons":{"description":"IntEnz is a freely available resource focused on enzyme nomenclature. IntEnz contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB) on the nomenclature and classification of enzyme-catalysed reactions.","examples":["17854"],"homepage":"http://www.ebi.ac.uk/intenz","keywords":["classification","enzyme"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"Integrated relational Enzyme database","pattern":"^\\d+$","prefix":"intenz","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/intenz:$1"}],"uri_format":"http://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=$1"},"wikidata":{"description":"classification scheme for enzymes","examples":["1.1.1.1","2.7.3.2"],"homepage":"http://www.chem.qmul.ac.uk/iubmb/enzyme/","name":"EC enzyme number","pattern":"^\\d\\.(-|n?\\d{1,2})\\.(-|n?\\d{1,2})\\.(-|n?\\d{1,3})$","prefix":"P591","uri_format":"http://enzyme.expasy.org/EC/$1","uri_format_rdf":"https://purl.expasy.org/enzyme/EC/$1","xrefs":{"wikidata":"Q741108"}},"wikidata_entity":null,"go":{"homepage":"http://enzyme.expasy.org/","name":"Enzyme Commission","prefix":"EC","uri_format":"https://enzyme.expasy.org/EC/$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://w3id.org/biopragmatics/resources/ec/ec.owl"}],"contact":{"email":"kristian.axelsen@sib.swiss"},"description":"The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.\n\nThe Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).\n\nThere are few notable resources providing access to the Enzyme Nomenclature:\n\n| Website | Homepage | Notes |
|---|---|---|
| ExplorEnz | https://www.enzyme-database.org | This is the resource officially recommended by IUBMB |
| IUBMB (via by Queen Mary) | https://iubmb.qmul.ac.uk/enzyme | This is a web-based version of the 1992 publication. |
| IntEnz | https://www.ebi.ac.uk/intenz | Shutdown in 2024 |
| ExPaSy | https://enzyme.expasy.org | |
| EnzymePortal | https://www.ebi.ac.uk/enzymeportal |
To import
Latest released version: http://purl.obolibrary.org/obo/iao.owl
Other versions
Developer (live) version: http://purl.obolibrary.org/obo/iao/dev/iao.owl
Ontology metadata properties and classes only: http://purl.obolibrary.org/obo/iao/dev/iao.owl
Dated versions
Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies.
Tracker: http://purl.obolibrary.org/obo/iao/tracker
Discussion group: http://groups.google.com/group/information-ontology","homepage":"http://purl.obolibrary.org/obo/iao","name":"Information Artifact Ontology","prefix":"IAO","publications":[{"url":"http://purl.obolibrary.org/obo/iao/reports"}],"version":"2022-11-07"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/iao.owl"}],"description":"The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.","extras":{"version.iri":"http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl"},"homepage":"https://github.com/information-artifact-ontology/IAO/","name":"Information Artifact Ontology (IAO)","prefix":"iao","tracker":"https://github.com/information-artifact-ontology/IAO/issues","version":"2022-11-07"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IAO/11/iao.owl"}],"description":"An ontology of information entities.","homepage":"https://github.com/information-artifact-ontology/IAO/","name":"Information Artifact Ontology","prefix":"IAO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Information Artifact Ontology","prefix":"IAO"},"cheminf":null,"fairsharing":{"contact":{"email":"alanruttenberg@gmail.com","name":"Alan Ruttenberg","orcid":"0000-0002-1604-3078"},"description":"The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.","homepage":"https://github.com/information-artifact-ontology/IAO/","keywords":["Biomedical Science","Subject Agnostic","Drug report","Experimental measurement","Data identity and mapping","assay","study design"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Information Artifact Ontology","prefix":"FAIRsharing.gq1xtx","publications":[{"doi":"10.3233/978-1-61499-101-4-68","pubmed":"22874154","title":"An information artifact ontology perspective on data collections and associated representational artifacts","url":"https://www.ncbi.nlm.nih.gov/pubmed/22874154","year":2012}],"repository":"https://github.com/information-artifact-ontology/IAO/wiki/Meeting_notes","short_names":["IAO"]},"biocontext":{"prefix":"IAO","uri_format":"http://purl.obolibrary.org/obo/IAO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/iao.owl"}],"description":"The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.","extras":{"version.iri":"http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl"},"homepage":"https://github.com/information-artifact-ontology/IAO/","keywords":["NFDI4ING","NFDI4CHEM","FAIR Data Spaces"],"name":"Information Artifact Ontology (IAO)","prefix":"iao","tracker":"https://github.com/information-artifact-ontology/IAO/issues"}},"iao.issue":{"prefix":"iao.issue","name":"Information Artifact Ontology Issue Tracker","description":"An issue on the Information Artifact Ontology GitHub issue tracker","pattern":"^\\d+$","uri_format":"https://github.com/information-artifact-ontology/IAO/issues/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/information-artifact-ontology/IAO/issues","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"206","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1553,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ical":{"prefix":"ical","name":"iCalendar in RDF","description":"A vocabulary for calendar events and related objects","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/2002/12/cal/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Vevent","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"zazuko":"ical"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":{"prefix":"ical","uri_format":"http://www.w3.org/2002/12/cal/icaltzd#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd10":{"prefix":"icd10","name":"International Classification of Diseases, 10th Revision","description":"The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States.","pattern":"^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$","uri_format":"https://icd.who.int/browse10/2019/en#/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"icdcodelookup","name":"ICD Code Lookup","description":"This site is dedicated exclusively to helping you look up ICD-10 codes, quickly access the codes you use most, and become more comfortable with the new code set in general.","homepage":"https://icdcodelookup.com/icd-10/codes","uri_format":"https://icdcodelookup.com/icd-10/codes/$1","first_party":null,"publications":null,"example":null,"status":{"value":"hijacked","date":"2025-10-25","contributor":"0000-0003-4423-4370","notes":null}},{"code":"icd10_2015","name":"ICD-10 Version 2015","description":"The 2015 revision of ICD-10","homepage":"https://icd.who.int/browse10/2015/en#","uri_format":"https://icd.who.int/browse10/2015/en#/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"icd10_2010","name":"ICD-10 Version 2010","description":"The 2010 revision of ICD-10","homepage":"https://icd.who.int/browse10/2010/en#","uri_format":"https://icd.who.int/browse10/2010/en#/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"icd10_2008","name":"ICD-10 Version 2008","description":"The 2008 revision of ICD-10","homepage":"https://icd.who.int/browse10/2008/en#","uri_format":"https://icd.who.int/browse10/2008/en#/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"icd10_2014","name":"ICD-10 Version 2014","description":"The 2014 revision of ICD-10","homepage":"https://icd.who.int/browse10/2014/en#","uri_format":"https://icd.who.int/browse10/2014/en#/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"icd10_2016","name":"ICD-10 Version 2016","description":"The 2016 revision of ICD-10","homepage":"https://icd.who.int/browse10/2016/en#","uri_format":"https://icd.who.int/browse10/2016/en#/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://icd.who.int/browse10","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":["V20","G00","A01.1","XVIII","R25-R29","R25","R25.3"],"example_decoys":["G00X","C34.90","C4A.8","C91.Z","C91.Z0"],"license":"https://cdn.who.int/media/docs/default-source/publishing-policies/copyright/who-faq-licensing-icd-10.pdf","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/icd10/icd10.owl","download_obo":"https://w3id.org/biopragmatics/resources/icd10/icd10.obo","download_json":"https://w3id.org/biopragmatics/resources/icd10/icd10.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICD10","bartoc":"447","biocontext":"ICD","biolink":"ICD10","bioportal":"ICD10","edam":"2611","fairsharing":"FAIRsharing.nj16g","hl7":"2.16.840.1.113883.6.3","miriam":"icd","n2t":"icd","prefixcommons":"icd","wikidata":"P494","wikidata.entity":"Q50018"},"synonyms":["ICD","ICD-10","ICD10","ICD10WHO"],"keywords":null,"domain":"disease","references":["https://www.who.int/about/policies/publishing/copyright"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Joe Flack","orcid":"0000-0002-2906-7319","email":null,"github":"joeflack4"},{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"},{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://upload.wikimedia.org/wikipedia/commons/a/a4/Icd10codeslogo.png","miriam":{"description":"The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.","examples":["C34"],"extras":{"miriam_id":"00000009","namespaceEmbeddedInLui":false},"homepage":"http://www.who.int/classifications/icd/en/","name":"ICD","pattern":"^[A-Z]\\d+(\\.[-\\d+])?$","prefix":"icd","status":"active","uri_format":"https://icd.who.int/browse10/2019/en#/$1"},"n2t":{"description":"The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.","examples":["C34"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.who.int/classifications/icd/en/","name":"International Statistical Classification of Diseases and Related Health Problems","pattern":"^[A-Z]\\d+(\\.[-\\d+])?$","prefix":"icd","uri_format":"http://apps.who.int/classifications/icd10/browse/2010/en#/$1"},"prefixcommons":{"description":"The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes.","examples":["C34"],"homepage":"http://www.who.int/classifications/icd/en/","keywords":["disease","taxonomy","classification"],"license":{"name":"http://www.who.int/about/copyright/en/index.html","url":"http://www.who.int/about/copyright/en/index.html"},"name":"International Classification of Diseases","pattern":"^[A-Z]\\d+(\\.[-\\d+])?$","prefix":"icd","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/icd:$1"}],"uri_format":"http://apps.who.int/classifications/icd10/browse/2010/en#/$1"},"wikidata":{"description":"identifier in the ICD Terminology of Diseases - Version 10","examples":["J10","J11","R19.6"],"name":"ICD-10 ID","pattern":"^[A-Z]\\d{2}(\\.\\d{1,2})?$","prefix":"P494","uri_format":"https://icd.who.int/browse10/2019/en#/$1","xrefs":{"wikidata":"Q45127"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"info@who.int","name":"World Health Organization"},"description":"International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva","name":"International Classification of Diseases, Version 10","prefix":"ICD10","version":"ICD10_1998"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva","name":"International Classification of Diseases, Version 10","prefix":"ICD10","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"ICD10","uri_format":"https://icd.who.int/browse10/2016/en#/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. ICD-10 is the 10th revision of the International Statistical Classification of Diseases and Related Health Problems (ICD), a medical classification list by the World Health Organization (WHO). It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.","homepage":"http://www.who.int/classifications/icd/en/","keywords":["Biomedical Science","Epidemiology","Health Science","Global Health","disease","diagnosis"],"license":{"name":"http://www.who.int/about/licensing/copyright_form/en","url":"http://www.who.int/about/licensing/copyright_form/en/"},"name":"International Classification of Diseases Version 10","prefix":"FAIRsharing.nj16g","short_names":["ICD-10"]},"biocontext":{"prefix":"ICD","uri_format":"http://identifiers.org/icd/$1"},"edam":{"description":"An identifier of a disease from the International Classification of Diseases (ICD) database.","name":"ICD","prefix":"2611"},"re3data":null,"hl7":{"description":"International Classification of Diseases revision 10 (ICD 10)Note this does NOT have the CM changes, and is specifically for international use.This node is the ontological branch in the HL7 OID tree. The actual ICD10 code systems (the various national and international versions) are defined below this node.","extras":{"organization":"World Health Organization"},"homepage":"https://who.int","name":"ICD10","preferred_prefix":"icd10","prefix":"2.16.840.1.113883.6.3","status":"active"},"bartoc":{"description":"The International Classification of Diseases (ICD) is the standard diagnostic tool for epidemiology, health management and clinical purposes. This includes the analysis of the general health situation of population groups. It is used to monitor the incidence and prevalence of diseases and other health problems. It is used to classify diseases and other health problems recorded on many types of health and vital records including death certificates and health records. In addition to enabling the storage and retrieval of diagnostic information for clinical, epidemiological and quality purposes, these records also provide the basis for the compilation of national mortality and morbidity statistics by WHO Member States. It is used for reimbursement and resource allocation decision-making by countries. ICD-10 was endorsed by the Forty-third World Health Assembly in May 1990 and came into use in WHO Member States as from 1994. The 11th revision of the classification has already started and will continue until 2015.","homepage":"https://www.who.int/standards/classifications/classification-of-diseases","name":"International Statistical Classification of Diseases","prefix":"447","short_names":["ICD"],"xrefs":{"wikidata":"Q50018"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd10cm":{"prefix":"icd10cm","name":"International Classification of Diseases, 10th Revision, Clinical Modification","description":"ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS).","pattern":"^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$","uri_format":"https://www.icd10data.com/search?s=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"bioportal.purl","name":"BioPortal PURL","description":"PURL from BioPortal","homepage":"http://purl.bioontology.org/ontology/ICD10CM","uri_format":"http://purl.bioontology.org/ontology/ICD10CM/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"icd.codes","name":"ICD Codes provider","description":"ICD Codes provider","homepage":"https://icd.codes","uri_format":"https://icd.codes/icd10cm/$1","first_party":null,"publications":null,"example":null,"status":{"value":"gone","date":"2025-07-28","contributor":"0000-0001-9439-5346","notes":null}}],"homepage":"https://www.icd10data.com/ICD10CM","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"F45.21","example_extras":["C00-D49","U49","C34","C34.90","C4A.8","C91.Z","C91.Z0","T37.0X1A"],"example_decoys":["C000","c00","C00-D499","C00-99","C34.90000"],"license":"CC BY-ND 3.0 IGO","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICD10CM","bioportal":"ICD10CM","fairsharing":"FAIRsharing.hpvbxb","hl7":"2.16.840.1.113883.6.90","wikidata":"P4229"},"synonyms":["ICD10CM"],"keywords":null,"domain":null,"references":["https://www.who.int/about/policies/publishing/copyright"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in the ICD-10-CM (International Classification of Diseases, 10th Revision, Clinical Modification)","examples":["A00-Z99","G47.52","G71.2"],"name":"ICD-10-CM","pattern":"^[A-Z]\\d{2}(-[A-Z]\\d{2}|[.][A-Z\\d]+|)$","prefix":"P4229","xrefs":{"wikidata":"Q5969475"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"pbrooks@hcfa.gov","name":"Patricia Brooks"},"description":"International Classification of Diseases, 10th Edition, Clinical Modification","homepage":"https://www.cdc.gov/nchs/icd/icd-10-cm.htm","name":"International Classification of Diseases, Version 10 - Clinical Modification","prefix":"ICD10CM","publications":[{"url":"http://www.cms.hhs.gov/"}],"version":"2026"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01","homepage":"http://www.cms.hhs.gov/","name":"International Classification of Diseases, Version 10 - Clinical Modification","prefix":"ICD10CM","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The International Classification of Diseases, Tenth Revision, Clinical Modification (ICD-10-CM) is a morbidity classification for classifying diagnoses and reason for visits in all American health care settings. The ICD-10-CM is based on the ICD-10, the statistical classification of disease published by the World Health Organization (WHO) which replaces ICD-9. ICD-10-CM replaced ICD-9-CM Volumes 1 and 2 from October 2015 onwards.","homepage":"https://www.cdc.gov/nchs/icd/icd-10-cm/","keywords":["Biomedical Science","Health Science","Medicine","Electronic Health Record","disease","diagnosis","morbidity"],"name":"International Classification of Diseases, Tenth Revision, Clinical Modification","prefix":"FAIRsharing.hpvbxb","short_names":["ICD-10-CM"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"The International Classification of Diseases, 10th Revision, Clinical Modification (ICD-10-CM), describes the classification of morbidity and mortality information for statistical purposes and for the indexing of healthcare records by diseases. The ICD-10-CM codes can be used as the value of the Act.cd attribute.","extras":{"organization":"National Center for Health Statistics/Centers for Disease Control and Prevention"},"homepage":"http://www.cdc.gov/nchs/about/otheract/icd9/icd10cm.htm","name":"International Classification of Diseases, 10th Revision, Clinical Modification (ICD-10-CM)","preferred_prefix":"icd10CM","prefix":"2.16.840.1.113883.6.90","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd10pcs":{"prefix":"icd10pcs","name":"International Classification of Diseases, 10th Revision, Procedure Coding System","description":"ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records.","pattern":null,"uri_format":"https://www.findacode.com/code.php?set=ICD10PCS&c=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01N50ZZ","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICD10PCS","bioportal":"ICD10PCS","fairsharing":"FAIRsharing.85k1jm","hl7":"2.16.840.1.113883.6.4","wikidata":"P1690"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in the ICD-10-PCS (Procedure Coding System, International Classification of Diseases, 10th revision)","examples":["01N50ZZ","0SRD0JZ"],"name":"ICD-10-PCS","prefix":"P1690","uri_format":"https://www.findacode.com/code.php?set=ICD10PCS&c=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"patricia.brooks2@cms.hhs.gov","name":"Pat Brooks"},"description":"ICD-10-PCS is a medical classification coding system for procedural codes.","homepage":"https://www.cms.gov/Medicare/Coding/ICD10/index.html","name":"International Classification of Diseases, Version 10 - Procedure Coding System","prefix":"ICD10PCS","publications":[{"url":"http://www.cms.hhs.gov"}],"version":"2026"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"ICD-10-PCS, 2009","homepage":"http://www.cms.hhs.gov","name":"International Classification of Diseases, Version 10 - Procedure Coding System","prefix":"ICD10PCS","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The ICD-10 Procedure Coding System (ICD-10-PCS) is an international system of medical classification used for procedural coding. The ICD-10-PCS is a procedure classification published by the United States for classifying procedures performed in hospital inpatient health care settings. The ICD-10-PCS replaces the procedural coding portion (Volume 3) of ICD-9-CM.","homepage":"https://www.cms.gov/medicare/coding-billing/icd-10-codes","keywords":["Biomedical Science","Epidemiology","Health Science","Electronic Health Record","disease","diagnosis","Classification","Hospital","morbidity"],"name":"International Classification of Diseases Version 10 - Procedure Coding System","prefix":"FAIRsharing.85k1jm","short_names":["ICD-10-PCS"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"The International Classification of Diseases, 10th Revision, Procedure Coding System (ICD-10-PCS), describes the classification of inpatient procedures for statistical purposes and for the indexing of healthcare records by procedures. The ICD-10-PCS codes can be used as the value of the Act.cd attribute","extras":{"organization":"Centers for Medicare and Medicaid Services"},"homepage":"http://cms.hhs.gov/paymentsystems/icd9/icd10.asp","name":"International Classification of Diseases, 10th Revision, Procedure Coding System (ICD-10-PCS)","preferred_prefix":"icd10PCS","prefix":"2.16.840.1.113883.6.4","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd11":{"prefix":"icd11","name":"International Classification of Diseases, 11th Revision (Foundation Component)","description":"The ICD-11 Foundation is the comprehensive base layer of the International Classification of Diseases, encompassing all diagnostic concepts, definitions, and semantic relationships, designed for flexibility and adaptability across various use cases, including research, ontology development, and detailed health data analysis.","pattern":null,"uri_format":"https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1","uri_format_resolvable":null,"rdf_uri_format":"http://id.who.int/icd/entity/$1","providers":[{"code":"api","name":"ICD 11 API Endpoint","description":"This goes to an API endpoint. For more information, see https://icd.who.int/icdapi","homepage":"https://icd.who.int","uri_format":"http://id.who.int/icd/entity/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"foundation","name":"ICD 11 Foundation","description":"This goes to the Foundation interface to ICD11","homepage":"https://icd.who.int/browse/2024-01/foundation","uri_format":"https://icd.who.int/browse/2024-01/foundation/en#$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"mms","name":"ICD 11 Mortality and Morbidity Statistics","description":"This goes to the Mortality and Morbidity Statistics interface to ICD11","homepage":"https://icd.who.int/browse/2024-01/mms","uri_format":"https://icd.who.int/browse/2024-01/mms/en#$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://icd.who.int/","repository":null,"contact":{"name":"ICD Helpdesk","orcid":null,"email":"icd@who.int","github":null},"contact_extras":null,"contact_group_email":"icd@who.int","contact_page":null,"owners":null,"example":"402558626","example_extras":null,"example_decoys":null,"license":"CC-BY-ND-3.0-IGO","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/icd11/icd11.owl","download_obo":"https://w3id.org/biopragmatics/resources/icd11/icd11.obo","download_json":"https://w3id.org/biopragmatics/resources/icd11/icd11.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"icd11.foundation","fairsharing":"FAIRsharing.97805c","hl7":"2.16.840.1.113883.6.347","integbio":"nbdc02556","wikidata":"P7807"},"synonyms":["ICD-11","ICD11","icd11.foundation"],"keywords":null,"domain":"disease","references":["https://icd.who.int/docs/icd-api/license/"],"publications":[{"pubmed":"31180012","doi":"10.1016/s0140-6736(19)31205-x","pmc":null,"title":"ICD-11","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Clinical codes from an ICD-11 linearization (a structured subset of the ICD-11 Foundation tailored for specific use cases, such as morbidity or mortality coding), such as RA00.0, have their own namespace (icd11.code).","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://upload.wikimedia.org/wikipedia/commons/2/23/ICD-11_Logo.jpg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in ICD terminology of diseases - Version 11 (foundation ID) (not Mortality and Morbidity Statistics ID)","examples":["402558626","698285441","784669405"],"name":"ICD-11 ID (Foundation)","pattern":"^[1-9]\\d*$","prefix":"P7807","uri_format":"https://icd.who.int/browse/latest-release/foundation/en#$1","xrefs":{"wikidata":"Q55695727"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"icd11.foundation","uri_format":"http://id.who.int/icd/entity/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The International Classification of Diseases (ICD) was created to allow the recording, reporting and grouping of conditions and factors that influence health. It contains categories for diseases, health related conditions, and external causes of illness or death. The purpose of the ICD is to allow the systematic recording, analysis, interpretation and comparison of mortality and morbidity data collected in different countries or areas and at different times. The ICD is used to translate diagnoses of diseases and other health problems into an alphanumeric code, which allows storage, retrieval, and analysis of the data. The ICD has become the international standard diagnostic classification for all general epidemiological and many health management purposes. ICD-11 was released in 2018 to allow Member States to prepare for implementation, including translating ICD into their national languages. Member States started reporting using ICD-11 on 1 January 2022.","homepage":"https://icd.who.int/en","keywords":["Biomedical Science","Epidemiology","Health Science","Global Health","Electronic Health Record","disease","diagnosis","morbidity"],"license":{"name":"http://www.who.int/about/licensing/copyright_form/en","url":"http://www.who.int/about/licensing/copyright_form/en/"},"name":"International Classification of Diseases Version 11","prefix":"FAIRsharing.97805c","short_names":["ICD 11"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"International Classification of Diseases 11th RevisionThe global standard for diagnostic health information","extras":{"organization":"World Health Organization"},"homepage":"https://who.int","name":"ICD-11","preferred_prefix":"icd11","prefix":"2.16.840.1.113883.6.347","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"This is a website for ICD (International Statistical Classification of Diseases and Related Health Problems) -11, which is an organized collection of global standard terms for health data and clinical documentation. The ICD-11 has been developed by the World Health Organization (WHO). There is a link to ICD-10 (previous version) in this site.","homepage":"https://icd.who.int/en","keywords":["Health/Disease","Ontology/Terminology/Nomenclature"],"name":"International Classification of Diseases 11th Revision","prefix":"nbdc02556","short_names":["ICD-11"],"status":"active","xrefs":{"fairsharing":"bsg-s001436/"}},"pathguide":null,"tib":null},"icd11.code":{"prefix":"icd11.code","name":"ICD 11 Codes","description":"An ICD-11 code is a standardized alphanumeric identifier used to classify and document diseases, conditions, and health-related issues for global healthcare and statistical purposes.","pattern":"^[0-9A-Z]+(\\.[0-9A-Z]+)?$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://icd.who.int/en","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NA06.8D","example_extras":["CA71.2","FB82.00","XM34M9"],"example_decoys":null,"license":"http://www.who.int/about/licensing/copyright_form/en","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/issues/1344"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1349,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd9":{"prefix":"icd9","name":"International Classification of Diseases, 9th Revision","description":"The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.","pattern":"^((\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?)|(\\d{1,3}-\\d{1,3})$","uri_format":"http://www.icd9data.com/getICD9Code.ashx?icd9=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.cdc.gov/nchs/icd/icd9.htm","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"277.9","example_extras":["401","401-405","995.81","E950","V15.01"],"example_decoys":null,"license":"CC BY-ND 3.0 IGO","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"ICD9","hl7":"2.16.840.1.113883.6.42","wikidata":"P493","wikidata.entity":"Q50018"},"synonyms":["ICD9","ICD9_2005","MTHICD9_2006"],"keywords":null,"domain":null,"references":["https://www.who.int/about/policies/publishing/copyright"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Note that ICD9 codes representing mid-hierarchy relations, such as those in the form of XXX-YYY are not possible to resolve, but are useful and appear in many places that make xrefs to ICD9","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in the ICD catalogue codes for diseases – Version 9","examples":["487","995.81","E950","V15.01"],"name":"ICD-9 ID","pattern":"^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$","prefix":"P493","uri_format":"http://www.icd9data.com/getICD9Code.ashx?icd9=$1","xrefs":{"wikidata":"Q50018"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"ICD9","uri_format":"http://translator.ncats.nih.gov/ICD9_$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"International Classification of Diseases, Version 9 (ICD9)","extras":{"organization":"World Health Organization"},"homepage":"https://who.int","name":"International Classification of Diseases, Version 9","preferred_prefix":"icd9","prefix":"2.16.840.1.113883.6.42","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icd9cm":{"prefix":"icd9cm","name":"International Classification of Diseases, 9th Revision, Clinical Modification","description":"ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.","pattern":"^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$","uri_format":"http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.cdc.gov/nchs/icd/icd9cm.htm","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"784","example_extras":null,"example_decoys":null,"license":"CC BY-ND 3.0 IGO","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICD9CM","bioportal":"ICD9CM","fairsharing":"FAIRsharing.10zsxb","hl7":"2.16.840.1.113883.6.2","wikidata":"P1692","wikidata.entity":"Q5737131"},"synonyms":["IC9CM","ICD9CM","ICD9CM_2005","ICD9CM_2006","ICDCM_2005"],"keywords":null,"domain":null,"references":["https://www.who.int/about/policies/publishing/copyright"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in the ICD adaption assigning diagnostic and procedure codes","examples":["135","42","503"],"name":"ICD-9-CM","pattern":"^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$","prefix":"P1692","uri_format":"http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1","xrefs":{"wikidata":"Q5737131"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"pbrooks@hcfa.gov","name":"Patricia Brooks"},"description":"The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use.","homepage":"http://www.cms.hhs.gov/","name":"International Classification of Diseases, Version 9 - Clinical Modification","prefix":"ICD9CM","version":"ICD9CM_2014"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use.","homepage":"http://www.cms.hhs.gov/","name":"International Classification of Diseases, Version 9 - Clinical Modification","prefix":"ICD9CM","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. The International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) is an adaption created by the U.S. National Center for Health Statistics (NCHS) and used in assigning diagnostic and procedure codes associated with inpatient, outpatient, and physician office utilization in the United States. The ICD-9-CM is based on the ICD-9 but provides for additional morbidity detail.","homepage":"https://archive.cdc.gov/#/details?url=https://www.cdc.gov/nchs/icd/icd9cm.htm","keywords":["Preclinical Studies","Biomedical Science","Epidemiology","Health Science","Medicine","disease","diagnosis","morbidity"],"name":"International Classification of Diseases, Ninth Revision, Clinical Modification","prefix":"FAIRsharing.10zsxb","short_names":["ICD-9-CM"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"The International Classification of Diseases, 9th Revision, Clinical Modification (ICD-9-CM), Volumes I, II (diagnoses) and III (procedures) describes the classification of morbidity and mortality information for statistical purposes and for the indexing of healthcare records by diseases and procedures. The ICD-9-CM codes can be used as the value of the Act.cd attribute.Note that this has been retired in favor of an explicit split between the diagnosis codes and the procedures codes as per the Vocablary TC decision on Wednesday Q4, January 21, 2004. Replaced by 2.16.840.1.113883.6.103 and 2.16.840.1.113883.6.104 as voted by committee. -T. Klein","extras":{"organization":"National Center for Health Statistics"},"homepage":"http://www.cdc.gov/nchs/icd9.htm.","name":"National Center for Health Statistics","preferred_prefix":"icd9cm","prefix":"2.16.840.1.113883.6.2","status":"inactive"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icdc":{"prefix":"icdc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"icdc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.","examples":["000009"],"extras":{"miriam_id":"00000812","namespaceEmbeddedInLui":false},"homepage":"https://caninecommons.cancer.gov/#/","name":"Integrated Canine Data Commons","pattern":"^\\d{6}$","prefix":"icdc","status":"active","uri_format":"https://caninecommons.cancer.gov/#/study/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icdo":{"prefix":"icdo","name":"International Classification of Diseases for Oncology","description":"The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases","pattern":"^[8-9]\\d{3}(/[0-3])?$","uri_format":"http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.who.int/classifications/icd/adaptations/oncology/en/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"9861/3","example_extras":null,"example_decoys":null,"license":"CC BY-ND 3.0 IGO","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"445","hl7":"2.16.840.1.113883.6.43","prefixcommons":"icdo","wikidata":"P563","wikidata.entity":"Q1430635"},"synonyms":["ICD-O","ICDO"],"keywords":null,"domain":null,"references":["https://www.who.int/about/policies/publishing/copyright"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Ontology of Oncology as based on CDC SEER's ICDO-3 Code classification","examples":["M-8272/O"],"name":"International Classification of Diseases for Oncology","pattern":"^[A-Z0-9]+\\/[0-9]+$","prefix":"icdo","prefix_synonyms":["icdo3","icd-o"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/icdo:$1"}],"xrefs":{"bioportal":"1670"}},"wikidata":{"description":"International Classification of Diseases for Oncology","examples":["8561/0","M9860/3"],"name":"ICD-O","pattern":"^[8-9]\\d{3}(/[0-3])?$","prefix":"P563","uri_format":"https://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"This branch node heads up the different versions of the International Classification of Diseases for Oncology, which must be identified as different coding systems under HL7 terminology rules.","extras":{"organization":"World Health Organization (WHO)"},"homepage":"http://www.who.int/en/","name":"International Classification of Diseases for Oncology: ICD-O","preferred_prefix":"icd-o","prefix":"2.16.840.1.113883.6.43","status":"active"},"bartoc":{"description":"Used principally in tumour or cancer registries for coding the site (topography) and the histology (morphology) of neoplasms, usually obtained from a pathology report.\n\nA multi-axial classification of the site, morphology, behaviour, and grading of neoplasms. The topography axis uses the ICD-10 classification of malignant neoplasms (except those categories which relate to secondary neoplasms and to specified morphological types of tumours) for all types of tumours, thereby providing greater site detail for non-malignant tumours than is provided in ICD-10. In contrast to ICD-10, the ICD-O includes topography for sites of haematopoietic and reticuloendothelial tumours. The morphology axis provides five-digit codes ranging from M-8000/0 to M-9989/3. The first four digits indicate the specific histological term. The fifth digit after the slash (/) is the behaviour code, which indicates whether a tumour is malignant, benign, in situ, or uncertain (whether benign or malignant). A separate one-digit code is also provided for histologic grading (differentiation).","homepage":"http://www.who.int/classifications/icd/adaptations/oncology/","name":"International Classification of Diseases for Oncology","prefix":"445","short_names":["ICD-O"],"xrefs":{"wikidata":"Q1430635"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iceberg.cime":{"prefix":"iceberg.cime","name":"ICEberg cis-integrative and mobilizable element","description":"ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.","pattern":"^\\d+$","uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_CIME.php?type=alpha&alpha=100","repository":null,"contact":{"name":"Hong-Yu Ou","orcid":"0000-0001-9439-1660","email":"hyou@sjtu.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iceberg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["biology","genomics"],"domain":null,"references":null,"publications":[{"pubmed":"30407568","doi":"10.1093/nar/gky1123","pmc":"PMC6323972","title":"ICEberg 2.0: an updated database of bacterial integrative and conjugative elements","year":2019},{"pubmed":"22009673","doi":"10.1093/nar/gkr846","pmc":"PMC3244999","title":"ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iceberg.element":{"prefix":"iceberg.element","name":"ICEberg integrative and conjugative element","description":null,"pattern":null,"uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=alpha&alpha=100","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iceberg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ICEBERG.ELEMENT","miriam":"iceberg.element","n2t":"iceberg.element"},"synonyms":["iceberg.ice"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"30407568","doi":"10.1093/nar/gky1123","pmc":"PMC6323972","title":"ICEberg 2.0: an updated database of bacterial integrative and conjugative elements","year":2019},{"pubmed":"22009673","doi":"10.1093/nar/gkr846","pmc":"PMC3244999","title":"ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.","examples":["100"],"extras":{"miriam_id":"00000469","namespaceEmbeddedInLui":false},"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2","name":"ICEberg element","pattern":"^\\d+$","prefix":"iceberg.element","status":"active","uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1"},"n2t":{"description":"ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.","examples":["100"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://db-mml.sjtu.edu.cn/ICEberg/","name":"ICEberg element at Shanghai Jiaotong University","pattern":"^\\d+$","prefix":"iceberg.element","uri_format":"http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ICEBERG.ELEMENT","uri_format":"http://identifiers.org/iceberg.element/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iceberg.family":{"prefix":"iceberg.family","name":null,"description":null,"pattern":null,"uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_fam.php","repository":null,"contact":{"name":"Hong-Yu Ou","orcid":"0000-0001-9439-1660","email":"hyou@sjtu.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iceberg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ICEBERG.FAMILY","miriam":"iceberg.family","n2t":"iceberg.family"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"30407568","doi":"10.1093/nar/gky1123","pmc":"PMC6323972","title":"ICEberg 2.0: an updated database of bacterial integrative and conjugative elements","year":2019},{"pubmed":"22009673","doi":"10.1093/nar/gkr846","pmc":"PMC3244999","title":"ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.","examples":["1"],"extras":{"miriam_id":"00000470","namespaceEmbeddedInLui":false},"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2","name":"ICEberg family","pattern":"^\\d+$","prefix":"iceberg.family","status":"active","uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1"},"n2t":{"description":"ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.","examples":["1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://db-mml.sjtu.edu.cn/ICEberg/","name":"ICEberg family at Shanghai Jiaotong University","pattern":"^\\d+$","prefix":"iceberg.family","uri_format":"http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ICEBERG.FAMILY","uri_format":"http://identifiers.org/iceberg.family/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iceberg.ime":{"prefix":"iceberg.ime","name":"ICEberg integrative and mobilizable element","description":"ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.","pattern":"^\\d+$","uri_format":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_IME.php?type=alpha&alpha=100","repository":null,"contact":{"name":"Hong-Yu Ou","orcid":"0000-0001-9439-1660","email":"hyou@sjtu.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iceberg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["biology","genomics"],"domain":null,"references":null,"publications":[{"pubmed":"30407568","doi":"10.1093/nar/gky1123","pmc":"PMC6323972","title":"ICEberg 2.0: an updated database of bacterial integrative and conjugative elements","year":2019},{"pubmed":"22009673","doi":"10.1093/nar/gkr846","pmc":"PMC3244999","title":"ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icechem":{"prefix":"icechem","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"ice.chem"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Integrated Chemical Environment (ICE) provides high-quality curated data and appropriate tools to support development and evaluation of new, revised, and alternative methods. ICE provides free online access to curated in vivo and in vitro test data, in silico toxicity predictions and chemical property data, reference chemical lists, and computational tools for chemical characterization and predicting toxicity.\nICE supports the following: (i) Data integration: brings together available data, including data on formulations; (ii) Results exploration: enables dynamic, graphical exploration with publication-quality graphics; (iii) Data analysis: allows characterization of data using online workflows, and (iv) FAIR data access: data are findable, accessible, interoperable, and reusable.","examples":["DTXSID7032004"],"extras":{"miriam_id":"00001082","namespaceEmbeddedInLui":false},"homepage":"https://ice.ntp.niehs.nih.gov","name":"Integrated Chemical Environment - Chemical data","pattern":"^\\d{2,7}-\\d{2}-\\d|DTXSID\\d{7,9}|[A-Z]{14}-[A-Z]{8}[SN][A-Z]-[A-Z]$","prefix":"ice.chem","status":"active","uri_format":"https://ice.ntp.niehs.nih.gov/api/v1/search?chemid=$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iceo":{"prefix":"iceo","name":null,"description":null,"pattern":"^\\d{7}(_\\d)?$","uri_format":"http://purl.obolibrary.org/obo/ICEO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000712_1","example_extras":["0000712"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICEO","bioportal":"ICEO","obofoundry":"iceo","ols":"iceo","ontobee":"ICEO","wikidata.entity":"Q81661661"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"35058462","doi":"10.1038/s41597-021-01112-5","pmc":"PMC8776819","title":"ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements","year":2022}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"ICEO is not consistent about its identfiers like ICEO:0000595:1 and ICEO:0000595_1","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/iceo.owl"}],"contact":{"email":"liumeng94@sjtu.edu.cn","github":"Lemon-Liu","name":"Meng LIU","orcid":"0000-0003-3781-6962"},"description":"ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs).","domain":"microbiology","homepage":"https://github.com/ontoice/ICEO","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Integrative and Conjugative Element Ontology","preferred_prefix":"ICEO","prefix":"iceo","publications":[{"pubmed":"35058462","title":"ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements"}],"repository":"https://github.com/ontoice/ICEO","status":"active"},"bioportal":{"contact":{"email":"noreply@bioontology.org","name":"Unknown"},"homepage":"https://github.com/ontoice/ICEO","name":"Integrative and Conjugative Element Ontology","prefix":"ICEO","version":"2.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/iceo.owl"}],"description":"A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.","homepage":"https://github.com/ontoice/ICEO","name":"ICEO: Ontology of Integrative and Conjugative Elements","prefix":"iceo","tracker":"https://github.com/ontoice/ICEO/issues","version":"2.1"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/ICEO/22/iceo.owl"}],"description":"ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs).","homepage":"https://github.com/ontoice/ICEO","name":"Integrative and Conjugative Element Ontology","prefix":"ICEO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Integrative and Conjugative Element Ontology","prefix":"ICEO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icepo":{"prefix":"icepo","name":"Ion Channel Electrophysiology Ontology","description":"The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools.","pattern":"^\\d{7}$","uri_format":"https://biopragmatics.github.io/providers/icepo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://download.nextprot.org/pub/current_release/controlled_vocabularies/","repository":null,"contact":{"name":"Pascale Gaudet","orcid":"0000-0003-1813-6857","email":"pascale.gaudet@isb-sib.ch","github":"pgaudet"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000002","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":null,"pmc":"PMC4823818","title":"ICEPO: the ion channel electrophysiology ontology","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icf":{"prefix":"icf","name":"International Classification of Functioning, Disability and Health","description":"The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels.","pattern":"^\\d+$","uri_format":"https://icd.who.int/dev11/l-icf/en#/http://id.who.int/icd/entity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://icd.who.int/dev11/l-icf/en","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"326705068","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICF","bioportal":"ICF","fairsharing":"FAIRsharing.7rngj0","hl7":"2.16.840.1.113883.6.254","prefixcommons":"icf"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This might be possible to roll directly into ICD11","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual’s functioning and disability occurs in a context, the ICF also includes a list of environmental factors.","examples":["s5808"],"homepage":"http://www.who.int/classifications/icf/en/","name":"WHO - International Classification of Functioning, Disability and Health","prefix":"icf","prefix_synonyms":["who.icf"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/icf:$1"}],"uri_format_rdf":"http://who.int/icf#$1","xrefs":{"bioportal":"1411"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"info@who.int","name":"The World Health Organization"},"description":"The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual's functioning and disability occurs in a context, the ICF also includes a list of environmental factors.
Source: http://www.who.int/classifications/icf/en/","homepage":"http://www.who.int/classifications/icf/en/","name":"International Classification of Functioning, Disability and Health","prefix":"ICF","version":"1.0.2"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/ICF/3/icf.owl"}],"description":"The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual's functioning and disability occurs in a context, the ICF also includes a list of environmental factors.
Source: http://www.who.int/classifications/icf/en/","homepage":"http://www.who.int/classifications/icf/en/","name":"International Classification of Functioning, Disability and Health","prefix":"ICF","version":"1.0.2"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The International Classification of Functioning, Disability and Health (ICF) is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels. ICF was officially endorsed by all 191 WHO Member States in the Fifty-fourth World Health Assembly on 22 May 2001 (resolution WHA 54.21) as the international standard to describe and measure health and disability.","homepage":"https://www.who.int/standards/classifications/international-classification-of-functioning-disability-and-health","keywords":["Biomedical Science","Health Science","Medicine","Primary Health Care","Electronic Health Record"],"license":{"url":"https://www.who.int/about/who-we-are/publishing-policies/copyright"},"name":"International Classification of Functioning, Disability and Health","prefix":"FAIRsharing.7rngj0","short_names":["ICF"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"ICF describes how people live with their health condition. ICF is a classification of health and health related domains that describe body functions and structures, activities and participation. The domains are classified from body, individual and societal perspectives. Since an individual's functioning and disability occurs in a context, ICF also includes a list of environmental factors. ICF is useful to understand and measure health outcomes. It can be used in clinical settings, health services or surveys at the individual or population level. Thus ICF complements ICD-10 , The International Statistical Classification of Diseases and Related Health Problems and therefore is looking beyond mortality and disease.","extras":{"organization":"World Health Organisation"},"homepage":"http://www.who.int/classifications/icf/en/","name":"International Classification of Function","preferred_prefix":"icf","prefix":"2.16.840.1.113883.6.254","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iclc":{"prefix":"iclc","name":null,"description":null,"pattern":"^\\w{3}\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ATL98012","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"ICLC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"http://www.iclc.it","name":"Interlab Cell Line Collection","prefix":"ICLC","uri_format":"http://www.iclc.it/details/det_list.php?line_id=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icldb":{"prefix":"icldb","name":"Insect Cell Line Database","description":"We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)","pattern":null,"uri_format":"https://entomology.ca.uky.edu/content/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://entomology.ca.uky.edu/aginsectcellsdatabase","repository":null,"contact":{"name":"Surjeet Kumar Arya","orcid":"0000-0002-2212-4771","email":"surjeet.arya@uky.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"64ba","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"ICLDB"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://entomology.ca.uky.edu/aginsectcellsdatabase","name":"Insect Cell Lines DataBase","prefix":"ICLDB","uri_format":"https://entomology.ca.uky.edu/content/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ico":{"prefix":"ico","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/ICO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000066","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ICO","biocontext":"ICO","bioportal":"ICO","fairsharing":"FAIRsharing.b9znd5","obofoundry":"ico","ols":"ico","ontobee":"ICO","wikidata.entity":"Q55118417"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ico.owl"}],"contact":{"email":"yongqunh@med.umich.edu","github":"yongqunh","name":"Yongqun Oliver He","orcid":"0000-0001-9189-9661"},"description":"An ontology of clinical informed consents","domain":"investigations","homepage":"https://github.com/ICO-ontology/ICO","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Informed Consent Ontology","preferred_prefix":"ICO","prefix":"ico","repository":"https://github.com/ICO-ontology/ICO","status":"active"},"bioportal":{"contact":{"email":"yongqunh@med.umich.edu","name":"Oliver He"},"description":"Informed Consent Ontology (ICO) is a community-based ontology in the domain of informed consent. It is an OBO library ontology and developed by following the OBO Foundry principles. , The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.","homepage":"https://github.com/ICO-ontology/ICO","license":{"name":"CC-BY-4.0"},"name":"Informed Consent Ontology","prefix":"ICO","publications":[{"url":"http://ceur-ws.org/Vol-1327/icbo2014_paper_54.pdf"}],"version":"2026-02-28"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ico.owl"}],"description":"The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ico/releases/2026-02-28/ico.owl"},"homepage":"https://github.com/ICO-ontology/ICO","name":"Informed Consent Ontology (ICO)","prefix":"ico","tracker":"https://github.com/ICO-ontology/ICO/issues","version":"2026-02-28"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/ICO/18/ico.owl"}],"description":"An ontology of clinical informed consents","homepage":"https://github.com/ICO-ontology/ICO","name":"Informed Consent Ontology","prefix":"ICO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Informed Consent Ontology","prefix":"ICO"},"cheminf":null,"fairsharing":{"contact":{"email":"yongqunh@med.umich.edu","name":"Yongqun He","orcid":"0000-0001-9189-9661"},"description":"Informed Consent Ontology (ICO) represents the documentations and processes involved in informed consent. ICO aims to support informed consent data integration and reasoning in the clinical research space. The core terms of ICO covers informed consent forms, the component inside the informed consent form, and various informed consent processes.","homepage":"https://github.com/ICO-ontology/ICO","keywords":["Biomedical Science","Clinical Studies","Health Science","Medicine"],"name":"Informed Consent Ontology","prefix":"FAIRsharing.b9znd5","repository":"https://github.com/ICO-ontology/ICO/issues","short_names":["ICO"]},"biocontext":{"prefix":"ICO","uri_format":"http://purl.obolibrary.org/obo/ICO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iconclass":{"prefix":"iconclass","name":"Iconclass Classification","description":"A classification system for the subject matter of works of art, originating from work from Henri van de Waal in the 1940.","pattern":null,"uri_format":"https://iconclass.org/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://iconclass.org","repository":null,"contact":{"name":"Etienne Posthumus","orcid":"0000-0002-0006-7542","email":"ep@epoz.org","github":"epoz"},"contact_extras":null,"contact_group_email":"info@iconclass.org","contact_page":null,"owners":null,"example":"3","example_extras":["98C","49E3932","11HH(ELISABETH)35","98C(ZENOBIA%20SEPTIMIA)2","98C(...)(%2B1)"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/iconclass/iconclass.owl","download_obo":"https://w3id.org/biopragmatics/resources/iconclass/iconclass.obo","download_json":"https://w3id.org/biopragmatics/resources/iconclass/iconclass.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"459","wikidata.entity":"Q1502787"},"synonyms":null,"keywords":null,"domain":"multiple","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"Iconclass is a subject-specific classification system. It is a hierarchically ordered collection of definitions of objects, people, events and abstract ideas that serve as the subject of an image. Art historians, researchers and curators use it to describe, classify and examine the subject of images represented in various media such as paintings, drawings and photographs. Numerous institutions across the world use Iconclass to describe and classify their collections in a standardized manner. In turn, users ranging from art historians to museum visitors use Iconclass to search and retrieve images from these collections. And as a research tool, Iconclass is also used to identify the significance of entire scenes or individual elements represented within an image. ICONCLASS applications used around the world have made it the most widely accepted classification system for visual documents. The three main components of Iconclass are: Classification System: 28,000 hierarchically ordered definitions divided into ten main divisions. Each definition consists of an alphanumeric classification code (notation) and the description of the iconographic subject (textual correlate). The definitions are used to index, catalogue and describe the subjects of images represented in works of art, reproductions, photographs and other sources. Alphabetical Index: 14,000 keywords used for locating the notation and its textual correlate needed to describe and/or index an image. Bibliography: 40,000 references to books and articles of iconographical interest (not yet online).","homepage":"https://iconclass.org/","license":{"spdx":"ODBL","url":"http://opendatacommons.org/licenses/odbl/1.0/"},"name":"Iconclass","prefix":"459","uri_format":"https://iconclass.org/$1","xrefs":{"wikidata":"Q1502787"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icpd.project":{"prefix":"icpd.project","name":"Indian Crop Phenome Database Project","description":"This resource is about projects in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]","pattern":"^PPJ_\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ibdc.dbtindia.gov.in/icpd","repository":null,"contact":{"name":"Sonia Balyan","orcid":"0000-0003-2136-4519","email":"sonia.balyan@ibdc.rcb.res.in","github":"soniabalyan24"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"PPJ_100024","example_extras":null,"example_decoys":null,"license":"CC BY-NC-SA 4.0","version":null,"part_of":null,"part_of_database":"icpd","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"project","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Sonia Balyan","orcid":"0000-0003-2136-4519","email":"sonia.balyan@ibdc.rcb.res.in","github":"soniabalyan24"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1570,"logo":"https://ibdc.dbtindia.gov.in/icpd/static/image/ICPD-log.jpg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"icpd.study":{"prefix":"icpd.study","name":"Indian Crop Phenome Database Study","description":"This resource is about studies in the Indian Crop Phenome Database (ICPD). The ICPD is a domain of the Indian Biological Data Center (IBDC), Regional Centre for Biotechnology, Faridabad, developed for the digitization of crop phenome data. Being the global agricultural powerhouse, the bulk of biological data generated in India is associated with agricultural trials. Ironically most of the trial data has been inaccessible to other researchers, and remains unpublished, and is lost as time passes. Therefore, ICPD would act as single-stop user-friendly platform for freely archiving, organizing, analyzing, and sharing the multi-crop phenome data following FAIR (Findable, Accessible, Interoperable and Re-usable) data principles. [from homepage]","pattern":"^PST_\\d+$","uri_format":"https://ibdc.dbtindia.gov.in/icpd/study-view-home/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ibdc.dbtindia.gov.in/icpd","repository":null,"contact":{"name":"Sonia Balyan","orcid":"0000-0003-2136-4519","email":"sonia.balyan@ibdc.rcb.res.in","github":"soniabalyan24"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"PST_100013","example_extras":null,"example_decoys":null,"license":"CC BY-NC-SA 4.0","version":null,"part_of":null,"part_of_database":"icpd","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Sonia Balyan","orcid":"0000-0003-2136-4519","email":"sonia.balyan@ibdc.rcb.res.in","github":"soniabalyan24"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1570,"logo":"https://ibdc.dbtindia.gov.in/icpd/static/image/ICPD-log.jpg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ictv":{"prefix":"ictv","name":"International Committee on Taxonomy of Viruses Ontology","description":"Ontology representation of the [International Committee on Taxonomy of Viruses (ICTV)](https://ictv.global/) for the [EVORA project](https://evora-project.eu/)","pattern":null,"uri_format":"http://ictv.global/id/MSL40/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/EVORA-project/ictv-ontology","repository":"https://github.com/EVORA-project/ictv-ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ICTV19990991","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"507","ols":"ictv"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"rdf","url":"https://github.com/EVORA-project/ictv-ontology/releases/latest/download/ictv_all_versions.owl.ttl.gz"}],"prefix":"ictv","version":"MSL41"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"Taxonomy lies at the uneasy interface between biology and logic. The processing of information follows somewhat different rules in these two systems and the role of taxonomy is to reconcile them as tidily as possible. To this end, the Virology Division of the International Union of Microbiological Societies (IUMS) charged the International Committee on Taxonomy of Viruses (ICTV) with the task of developing, refining, and maintaining a universal virus taxonomy. The goal of this undertaking is to categorize the multitude of known viruses into a single classification scheme that reflects their evolutionary relationships, i.e. their individual phylogenies.","homepage":"https://talk.ictvonline.org/taxonomy","name":"Virus Taxonomy","prefix":"507","short_names":["ICTV"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ideal":{"prefix":"ideal","name":"Intrinsically Disordered proteins with Extensive Annotations and Literature","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ideal-db.org","repository":null,"contact":{"name":"Satoshi Fukuchi","orcid":"0000-0002-5705-3061","email":"sfukuchi@maebashi-it.ac.jp","github":"sfukuchi"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IDEAL","integbio":"nbdc01456","miriam":"ideal","n2t":"ideal","pathguide":"701","uniprot":"DB-0251"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24178034","doi":"10.1093/nar/gkt1010","pmc":"PMC3965115","title":"IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners","year":2013}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.","examples":["IID00001"],"extras":{"miriam_id":"00000398","namespaceEmbeddedInLui":false},"homepage":"http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/","name":"IDEAL","pattern":"^IID\\d+$","prefix":"ideal","status":"active","uri_format":"http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1"},"n2t":{"description":"IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.","examples":["IID00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/","name":"IDEAL at Maebashi Institute of Technology","pattern":"^IID\\d+$","prefix":"ideal","uri_format":"http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.ideal-db.org/","keywords":["Family and domain databases"],"name":"Intrinsically Disordered proteins with Extensive Annotations and Literature","prefix":"DB-0251","publications":[{"doi":"10.1093/nar/gkt1010","pubmed":"24178034"}],"short_names":["IDEAL"],"uri_format":"https://www.ideal-db.org/ideal.php?id=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IDEAL","uri_format":"http://identifiers.org/ideal/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"This is a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references, and structural domain assignment. This database allows to browse by a list or search using keywords or BLAST. Data are downloadable with a XML file.","homepage":"https://www.ideal-db.org","keywords":["Protein","Interaction/Pathway","Image/Movie","3D structure"],"name":"Intrinsically Disordered proteins with Exten sive Annotations and Literatures","prefix":"nbdc01456","publications":[{"pubmed":"22067451"}],"short_names":["IDEAL"],"status":"active","xrefs":{"fairsharing":"biodbcore-000052"}},"pathguide":{"homepage":"http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/","name":"Intrinsically Disordered proteins with Extensive Annotations and Literature","prefix":"701","short_names":["IDEAL"]},"tib":null},"ido":{"prefix":"ido","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/IDO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"obo.1","name":"Nonstandard OBO PURL","description":"This incorrect encoding was found inside IDO-COVID-19","homepage":"http://purl.obolibrary.org","uri_format":"http://purl.obolibrary.org/obo/ido.owl/IDO_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"IDO","biocontext":"IDO","bioportal":"IDO","fairsharing":"FAIRsharing.aae3v6","miriam":"ido","n2t":"ido","obofoundry":"ido","ols":"ido","ontobee":"IDO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34275487","doi":"10.1186/s13326-021-00245-1","pmc":"PMC8286442","title":"The Infectious Disease Ontology in the age of COVID-19","year":2021},{"pubmed":"34275487","doi":"10.1186/s13326-021-00245-1","pmc":null,"title":"The Infectious Disease Ontology in the age of COVID-19","year":2021},{"pubmed":"34275487","doi":null,"pmc":null,"title":"The Infectious Disease Ontology in the age of COVID-19","year":null},{"pubmed":"34275487","doi":"10.1186/s13326-021-00245-1","pmc":null,"title":"The Infectious Disease Ontology in the age of COVID-19","year":2021},{"pubmed":"34275487","doi":null,"pmc":null,"title":"The Infectious Disease Ontology in the age of COVID-19","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Yohann Paris","orcid":"0009-0006-6049-1392","email":"github@yohannparis.com","github":"YohannParis"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.","examples":["0000504"],"extras":{"miriam_id":"00000677","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/ido","name":"Infectious Disease Ontology","pattern":"^[0-9]+$","prefix":"ido","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/ido/terms?obo_id=IDO:$1"},"n2t":{"description":"Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.","examples":["0000504"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ols/ontologies/ido","name":"IDO through OLS","pattern":"^[0-9]+$","prefix":"ido","uri_format":"https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ido.owl"}],"contact":{"email":"Lindsay.Cowell@utsouthwestern.edu","github":"lgcowell","name":"Lindsay Cowell","orcid":"0000-0003-1617-8244"},"description":"A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain.","domain":"health","homepage":"http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology","license":{"name":"CC BY 3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Infectious Disease Ontology","preferred_prefix":"IDO","prefix":"ido","publications":[{"pubmed":"34275487","title":"The Infectious Disease Ontology in the age of COVID-19"}],"repository":"https://github.com/infectious-disease-ontology/infectious-disease-ontology","status":"active","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"johnbeverley2021@u.northwestern.edu","name":"John Beverley"},"description":"The IDO ontologies are designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedical and clinical aspects of most infectious diseases. Sub-domain specific extensions of IDO-Core complete the set providing ontology coverage of entities relevant to specific pathogens or diseases.
To import,
Latest version: http://purl.obolibrary.org/obo/ido.owl
This version (2010-12-02): http://purl.obolibrary.org/obo/ido/2010-12-02/ido.owl
Previous versions:
2010-05-26 http://purl.obolibrary.org/obo/ido/2010-05-26/ido.owl
2009-08-14 http://purl.obolibrary.org/obo/ido/2009-08-14/ido.owl
Latest release notes at http://infectiousdiseaseontology.org/page/Download
Please note: The ontology metrics displayed by BioPortal do not distinguish IDO-developed terms from terms imported from other ontologies.","homepage":"http://infectiousdiseaseontology.org","name":"Infectious Disease Ontology","prefix":"IDO","publications":[{"url":"http://infectiousdiseaseontology.org/page/Publications"}],"version":"8-3-20"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ido.owl"}],"description":"A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl"},"homepage":"http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology","name":"Infectious Disease Ontology","prefix":"ido","tracker":"https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues","version":"2017-11-03"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IDO/12/ido.owl"}],"homepage":"http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology","name":"Infectious Disease Ontology","prefix":"IDO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Infectious Disease Ontology","prefix":"IDO"},"cheminf":null,"fairsharing":{"contact":{"email":"Lindsay.Cowell@utsouthwestern.edu","name":"Lindsay Cowell","orcid":"0000-0003-1617-8244"},"description":"The IDO ontologies are designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedical and clinical aspects of most infectious diseases. Sub-domain specific extensions of IDO-Core complete the set providing ontology coverage of entities relevant to specific pathogens or diseases. ","homepage":"https://github.com/infectious-disease-ontology","keywords":["Preclinical Studies","Biomedical Science","Molecular Infection Biology","disease","disease course","Classification"],"license":{"name":"https://creativecommons.org/licenses/by/3.0/us","url":"https://creativecommons.org/licenses/by/3.0/us/"},"name":"Infectious Disease Ontology Core","prefix":"FAIRsharing.aae3v6","publications":[{"doi":"10.1186/s13326-021-00245-1","pubmed":"34275487","title":"The Infectious Disease Ontology in the age of COVID-19","url":"https://doi.org/10.1186/s13326-021-00245-1","year":2021}],"repository":"https://github.com/infectious-disease-ontology/infectious-disease-ontology","short_names":["IDO"]},"biocontext":{"prefix":"IDO","uri_format":"http://purl.obolibrary.org/obo/IDO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idocovid19":{"prefix":"idocovid19","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/COVIDO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"obo1","name":"Incorrect OBO PURL variation 1","description":"This variation uses incorrect usage of dashes instead of underscores","homepage":"http://purl.obolibrary.org","uri_format":"http://purl.obolibrary.org/obo/IDO-COVID-19_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":"https://github.com/infectious-disease-ontology-extensions/ido-covid-19","contact":{"name":"John Beverly","orcid":"0000-0002-1118-1738","email":"johnbeverley2021@u.northwestern.edu","github":"johnbeve"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001191","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"IDO-COVID-19","bioportal":"IDO-COVID-19","ols":"idocovid19"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"johnbeverley2021@u.northwestern.edu","name":"John Beverley"},"description":"The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.","homepage":"https://github.com/infectious-disease-ontology-extensions/ido-covid-19","name":"The COVID-19 Infectious Disease Ontology","prefix":"IDO-COVID-19","version":"8-3-2020"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"contact":{"email":"johnbeverley2021@u.northwestern.edu"},"description":"The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.","extras":{"version.iri":"http://purl.obolibrary.org/obo/2020-21-07/ido-covid-19.owl"},"homepage":"https://github.com/infectious-disease-ontology-extensions/ido-covid-19","name":"The COVID-19 Infectious Disease Ontology","prefix":"idocovid19","uri_format":"http://purl.obolibrary.org/obo/IDO-COVID-19$1","version":"2020-21-07"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IDO-COVID-19/2/ido-covid-19.owl"}],"description":"The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.","homepage":"https://github.com/infectious-disease-ontology-extensions/ido-covid-19","name":"The COVID-19 Infectious Disease Ontology","prefix":"IDO-COVID-19","version":"8-3-2020"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idoden":{"prefix":"idoden","name":"Dengue Fever Ontology","description":"An ontology for dengue fever.","pattern":"^\\d{7}$","uri_format":"http://purl.bioontology.org/ontology/IDODEN_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioportal.bioontology.org/ontologies/IDODEN","repository":null,"contact":{"name":"Elvira Mitraka","orcid":"0000-0003-0719-3485","email":"elvira@imbb.forth.gr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0003463","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"IDODEN","bioportal":"IDODEN","fairsharing":"FAIRsharing.askzq4"},"synonyms":null,"keywords":null,"domain":null,"references":["https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0003479"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"elvira@imbb.forth.gr","name":"Elvira Mitraka"},"description":"An ontology for dengue fever.","homepage":"http://code.google.com/p/dengue-fever-ontology/","name":"Dengue Fever Ontology","prefix":"IDODEN","version":"0.15b"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IDODEN/6/idoden.owl"}],"description":"An ontology for dengue fever.","homepage":"http://code.google.com/p/dengue-fever-ontology/","name":"Dengue Fever Ontology","prefix":"IDODEN","version":"0.15b"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"This resource is no longer available because its underlying source material is not in scope for FAIRsharing.Records previously linked: [549, 720]. ","homepage":"http://code.google.com/p/dengue-fever-ontology/","keywords":["Medicine"],"name":"Dengue Fever Ontology","prefix":"FAIRsharing.askzq4","short_names":["IDODEN"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idog":{"prefix":"idog","name":"Integrated Resource for Domestic Dog","description":"Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses.","pattern":"^\\d+$","uri_format":"https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ngdc.cncb.ac.cn/idog/","repository":null,"contact":{"name":"Yiming Bao","orcid":"0000-0002-9922-9723","email":"baoym@big.ac.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"4","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc02480","re3data":"r3d100012176"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/725"],"publications":[{"pubmed":"30371881","doi":"10.1093/nar/gky1041","pmc":"PMC6323916","title":"iDog: an integrated resource for domestic dogs and wild canids","year":2019},{"pubmed":"30371881","doi":"10.1093/nar/gky1041","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"iDog, an integrated resource for domestic dog (Canis lupus familiaris) and wild canids, provides the worldwide dog research community a variety of data services. This includes Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressions, Single Cell, Dog-Human Homolog Diseases and Literatures. In addition, iDog provides Online tools for performing genomic data visualization and analyses.","homepage":"https://ngdc.cncb.ac.cn/idog/","name":"iDog","prefix":"r3d100012176","prefix_synonyms":["DoGSD","Dog Genome SNP Database"],"xrefs":{"doi":"10.17616/R3DH12"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids. It includes information about Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressions, GO Function Annotations, Dog-Human Homolog Diseases and Literatures. In addition, it provides online tools for performing genomic data visualization and analyses.","homepage":"https://bigd.big.ac.cn/idog/","keywords":["Genome/Gene","Genetic variation","Organism","Health/Disease","Sequence","Expression","Phenotype","Interaction/Pathway","Bibliography/Documents"],"name":"iDog","prefix":"nbdc02480","publications":[{"doi":"10.1093/nar/gky1041","pubmed":"30371881"}],"status":"active"},"pathguide":null,"tib":null},"idomal":{"prefix":"idomal","name":null,"description":null,"pattern":"^(5?)\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0002350","example_extras":["50000015"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/idomal.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"IDOMAL","biocontext":"IDOMAL","bioportal":"IDOMAL","fairsharing":"FAIRsharing.2q8c28","obofoundry":"idomal","ols":"idomal","ontobee":"IDOMAL"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24034841","doi":"10.1186/2041-1480-4-16","pmc":"PMC3848731","title":"IDOMAL: the malaria ontology revisited","year":2013},{"pubmed":"20698959","doi":"10.1186/1475-2875-9-230","pmc":"PMC2925367","title":"IDOMAL: an ontology for malaria","year":2010},{"pubmed":"24034841","doi":"10.1186/2041-1480-4-16","pmc":null,"title":"IDOMAL: the malaria ontology revisited","year":2013},{"pubmed":"20698959","doi":"10.1186/1475-2875-9-230","pmc":null,"title":"IDOMAL: an ontology for malaria","year":2010},{"pubmed":"24034841","doi":"10.1186/2041-1480-4-16","pmc":null,"title":"IDOMAL: the malaria ontology revisited","year":2013},{"pubmed":"20698959","doi":"10.1186/1475-2875-9-230","pmc":null,"title":"IDOMAL: an ontology for malaria","year":2010},{"pubmed":"24034841","doi":"10.1186/2041-1480-4-16","pmc":null,"title":"IDOMAL: the malaria ontology revisited","year":2013},{"pubmed":"20698959","doi":"10.1186/1475-2875-9-230","pmc":null,"title":"IDOMAL: an ontology for malaria","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/idomal.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/idomal.obo"}],"contact":{"email":"topalis@imbb.forth.gr","name":"Pantelis Topalis"},"description":"An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.","domain":"health","homepage":"https://www.vectorbase.org/ontology-browser","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Malaria Ontology","preferred_prefix":"IDOMAL","prefix":"idomal","repository":"https://github.com/VEuPathDB-ontology/IDOMAL","status":"inactive"},"bioportal":{"contact":{"email":"topalis@imbb.forth.gr","name":"Pantelis Topalis"},"description":"An application ontology for malaria extending the infectious disease ontology (IDO)","homepage":"http://anobase.vectorbase.org/idomal/IDOMAL.obo","name":"Malaria Ontology","prefix":"IDOMAL","publications":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2925367/?tool=pubmed"}],"version":"1.3.9"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/idomal.owl"}],"description":"An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.","extras":{"version.iri":"http://purl.obolibrary.org/obo/idomal/2015-03-16/idomal.owl"},"homepage":"https://www.vectorbase.org/ontology-browser","name":"Malaria Ontology","prefix":"idomal","version":"2015-03-16"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IDOMAL/187/idomal.owl"}],"description":"An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.","homepage":"https://www.vectorbase.org/ontology-browser","name":"Malaria Ontology","prefix":"IDOMAL"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Malaria Ontology","prefix":"IDOMAL"},"cheminf":null,"fairsharing":{"contact":{"email":"topalis@imbb.forth.gr","name":"Pantelis Topalis","orcid":"0000-0002-1635-4810"},"description":"An application ontology for malaria extending the infectious disease ontology (IDO). With about half a billion cases, of which nearly one million fatal ones, malaria constitutes one of the major infectious diseases worldwide. A recently revived effort to eliminate the disease also focuses on IT resources for its efficient control, which prominently includes the control of the mosquito vectors that transmit the Plasmodium pathogens. As part of this effort, IDOMAL has been developed and it is continually being updated.","homepage":"https://github.com/VEuPathDB-ontology/IDOMAL","keywords":["Life Science","Biomedical Science","Molecular Infection Biology","malaria","intervention design","disease","pathogen"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Infection Disease Ontology Malaria","prefix":"FAIRsharing.2q8c28","publications":[{"doi":"10.1186/2041-1480-4-16","pubmed":"24034841","title":"IDOMAL: the malaria ontology revisited","url":"http://doi.org/10.1186/2041-1480-4-16","year":2013},{"doi":"10.1186/1475-2875-9-230","pubmed":"20698959","title":"IDOMAL: an ontology for malaria","url":"http://doi.org/10.1186/1475-2875-9-230","year":2010}],"short_names":["IDOMAL"]},"biocontext":{"prefix":"IDOMAL","uri_format":"http://purl.obolibrary.org/obo/IDOMAL_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idoo":{"prefix":"idoo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"idoo","n2t":"idoo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Identifiers.org Ontology","examples":["DataCollection"],"extras":{"miriam_id":"00000683","namespaceEmbeddedInLui":false},"homepage":"http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology","name":"Identifiers.org Ontology","pattern":"^[0-9a-zA-Z]+$","prefix":"idoo","status":"active","uri_format":"http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"},"n2t":{"description":"Identifiers.org Ontology","examples":["DataCollection"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology","name":"Identifiers.org Ontology","pattern":"^[0-9a-zA-Z]+$","prefix":"idoo","uri_format":"http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idot":{"prefix":"idot","name":null,"description":null,"pattern":null,"uri_format":"https://biomodels.net/vocab/idot.rdf#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://biomodels.net/vocab/idot.rdf","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"idot","miriam":"idot","n2t":"idot"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"idot","mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.","examples":["Namespace"],"extras":{"miriam_id":"00000519","namespaceEmbeddedInLui":false},"homepage":"https://github.com/identifiers-org/ontop","name":"Identifiers.org Terms","pattern":"^[A-Za-z]+$","prefix":"idot","status":"active","uri_format":"https://github.com/identifiers-org/ontop/tree/main/idorg-ontology#idot$1"},"n2t":{"description":"Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.","examples":["identifierPattern"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://identifiers.org/","name":"IdoT via biomodels.net","pattern":"^[A-Za-z]+$","prefix":"idot","uri_format":"https://biomodels.net/vocab/idot.rdf#$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"idot","uri_format":"http://identifiers.org/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idpo":{"prefix":"idpo","name":"Intrinsically Disordered Proteins Ontology","description":"IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.","pattern":"^\\d{5}$","uri_format":"https://www.disprot.org/idpo/IDPO:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.disprot.org/ontology","repository":"https://github.com/BioComputingUP/idpo","contact":{"name":"Federica Quaglia","orcid":"0000-0002-0341-4888","email":"f.quaglia@ibiom.cnr.it","github":"federicaquaglia"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00056","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.bc973b"},"synonyms":null,"keywords":["protein structure","proteins","structural biochemistry","structural bioinformatics"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"f.quaglia@ibiom.cnr.it","name":"Federica Quaglia","orcid":"0000-0002-0341-4888"},"description":"The Intrinsically Disordered Proteins Ontology (IDPO) describes the structural aspects of experimentally validated intrinsically disordered proteins (IDPs), intrinsically disordered regions (IDRs), and functions directly associated with protein disordered states.","homepage":"https://www.disprot.org/ontology","keywords":["Structural Biology","Proteomics","Protein Analysis"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Intrinsically Disordered Proteins Ontology","prefix":"FAIRsharing.bc973b","publications":[{"doi":"10.1093/nar/gkad928","pubmed":"37904585","title":"DisProt in 2024: improving function annotation of intrinsically disordered proteins","url":"https://doi.org/10.1093/nar/gkad928","year":2024},{"doi":"10.1093/database/baae009","title":"Best practices for the manual curation of intrinsically disordered proteins in DisProt","url":"http://dx.doi.org/10.1093/database/baae009","year":2024}],"repository":"https://github.com/BioComputingUP/idpo/releases/","short_names":["IDPO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idr":{"prefix":"idr","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"idr","re3data":"r3d100012435"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"28775673","doi":"10.1038/nmeth.4326","pmc":"PMC5536224","title":"The Image Data Resource: A Bioimage Data Integration and Publication Platform","year":2017}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.","examples":["0001"],"extras":{"miriam_id":"00000743","namespaceEmbeddedInLui":false},"homepage":"https://idr.openmicroscopy.org","name":"Image Data Resource","pattern":"^[0-9]{4}$","prefix":"idr","status":"active","uri_format":"https://idr.openmicroscopy.org/search/?query=Name:idr$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"The IDR makes datasets that have never previously been accessible publicly available, allowing the community to search, view, mine and even process and analyze large, complex, multidimensional life sciences image data. Sharing data promotes the validation of experimental methods and scientific conclusions, the comparison with new data obtained by the global scientific community, and enables data reuse by developers of new analysis and processing tools.","homepage":"https://idr.openmicroscopy.org/about/","name":"Image Data Resource","prefix":"r3d100012435","prefix_synonyms":["IDR"],"xrefs":{"doi":"10.17616/R3XR0R","omics":"13850"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"idsa":{"prefix":"idsa","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/International-Data-Spaces-Association/InformationModel","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"tib":"idsa"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology defines classes and properties for describing participants, infrastructure, data and services of the International Data Spaces (formerly known as Industrial Data Space).","homepage":"https://www.internationaldataspaces.org/","keywords":["NFDI4ING","engineering"],"name":"International Data Spaces Information Model","prefix":"idsa","tracker":"https://github.com/International-Data-Spaces-Association/InformationModel/issues","uri_format":"https://w3id.org/idsa/core/$1"}},"iedb.assay":{"prefix":"iedb.assay","name":"Immune Epitope Database Assays","description":"Identifiers for specific experimental assays that serve as evidence for immune-related studies.","pattern":"^\\d+$","uri_format":"https://www.iedb.org/assay/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"cedar","name":"Cancer Epitope Database and Analysis Resource","description":"Cancer Epitope Database and Analysis Resource (CEDAR) is a specialized interface providing cancer-focused access to IEDB data with domain-specific analysis tools and workflows.","homepage":"https://cedar.iedb.org/","uri_format":"https://cedar.iedb.org/assay/$1","first_party":null,"publications":[{"pubmed":"40779104","doi":"10.1007/978-1-0716-4566-6_3","pmc":null,"title":"Using the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025}],"example":null,"status":null}],"homepage":"https://www.iedb.org/","repository":null,"contact":{"name":"Randi Vita","orcid":"0000-0001-8957-7612","email":"rvita@liai.org","github":"rvita"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1691753","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc00924","re3data":"r3d100012702"},"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"25300482","doi":"10.1093/nar/gku938","pmc":"PMC4384014","title":"The immune epitope database (IEDB) 3.0","year":2014},{"pubmed":"22681406","doi":"10.1111/j.1365-2567.2012.03611.x","pmc":"PMC3461392","title":"The immune epitope database: a historical retrospective of the first decade","year":2012},{"pubmed":"19906713","doi":"10.1093/nar/gkp1004","pmc":"PMC2808938","title":"The immune epitope database 2.0","year":2009},{"pubmed":"16312048","doi":null,"pmc":null,"title":"The immune epitope database and analysis resource: from vision to blueprint","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1204,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"IEDB offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. Epitopes involved in infectious disease, allergy, autoimmunity, and transplant are included.\nThe IEDB also hosts tools to assist in the prediction and analysis of B cell and T cell epitopes.","homepage":"https://www.iedb.org/","license":{"name":"CC"},"name":"Immune Epitope Database","prefix":"r3d100012702","prefix_synonyms":["IEDB","Immune Epitope Database and Analysis Resource"],"xrefs":{"doi":"10.17616/R3X217","nif":"0000-03017"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"IEDB is a database of immunological molecules. The database contains entries on epitopes, MHC alleles and assays measuring immunological entities gathered from the literature. Users can search by epitope structure, epitope source, recognition context, or disease associations. Epitope prediction tools are available online, and some tools are available for local download and operation.","homepage":"http://www.immuneepitope.org/","keywords":["Protein","Health/Disease","Sequence","Bibliography/Documents"],"name":"Immune Epitope Database","prefix":"nbdc00924","publications":[{"pubmed":"19906713"}],"short_names":["IEDB"],"status":"active"},"pathguide":null,"tib":null},"iedb.epitope":{"prefix":"iedb.epitope","name":"Immune Epitope Database Epitopes","description":"Identifiers for epitopes, which are the specific parts of antigens recognized by the immune system.","pattern":"^\\d+$","uri_format":"https://www.iedb.org/epitope/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"cedar","name":"Cancer Epitope Database and Analysis Resource","description":"Cancer Epitope Database and Analysis Resource (CEDAR) is a specialized interface providing cancer-focused access to IEDB data with domain-specific analysis tools and workflows.","homepage":"https://cedar.iedb.org/","uri_format":"https://cedar.iedb.org/epitope/$1","first_party":null,"publications":[{"pubmed":"40779104","doi":"10.1007/978-1-0716-4566-6_3","pmc":null,"title":"Using the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025}],"example":null,"status":null}],"homepage":"https://www.iedb.org/","repository":null,"contact":{"name":"Randi Vita","orcid":"0000-0001-8957-7612","email":"rvita@liai.org","github":"rvita"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"117395","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"tied"},"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"25300482","doi":"10.1093/nar/gku938","pmc":"PMC4384014","title":"The immune epitope database (IEDB) 3.0","year":2014},{"pubmed":"22681406","doi":"10.1111/j.1365-2567.2012.03611.x","pmc":"PMC3461392","title":"The immune epitope database: a historical retrospective of the first decade","year":2012},{"pubmed":"19906713","doi":"10.1093/nar/gkp1004","pmc":"PMC2808938","title":"The immune epitope database 2.0","year":2009},{"pubmed":"16312048","doi":null,"pmc":null,"title":"The immune epitope database and analysis resource: from vision to blueprint","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1204,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The IEDB contains data related to antibody and T cell epitopes for humans, non-human primates, rodents, and other animal species.","examples":["21"],"homepage":"http://www.iedb.org","keywords":["protein","small molecule"],"name":"The Immune Epitope Database (IEDB)","pattern":"^\\d+$","prefix":"tied","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tied:$1"}],"uri_format":"http://www.iedb.org/epId/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iedb.mhc":{"prefix":"iedb.mhc","name":"Immune Epitope Database MHC Restrictions","description":"Identifiers for Major Histocompatibility Complex (MHC) restrictions of immune cells, detailing genetic factors that influence immune recognition.","pattern":"^\\d+$","uri_format":"https://www.iedb.org/mhc/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.iedb.org/","repository":null,"contact":{"name":"Randi Vita","orcid":"0000-0001-8957-7612","email":"rvita@liai.org","github":"rvita"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"86","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"25300482","doi":"10.1093/nar/gku938","pmc":"PMC4384014","title":"The immune epitope database (IEDB) 3.0","year":2014},{"pubmed":"22681406","doi":"10.1111/j.1365-2567.2012.03611.x","pmc":"PMC3461392","title":"The immune epitope database: a historical retrospective of the first decade","year":2012},{"pubmed":"19906713","doi":"10.1093/nar/gkp1004","pmc":"PMC2808938","title":"The immune epitope database 2.0","year":2009},{"pubmed":"16312048","doi":null,"pmc":null,"title":"The immune epitope database and analysis resource: from vision to blueprint","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1204,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iedb.receptor":{"prefix":"iedb.receptor","name":"Immune Epitope Database Receptors","description":"Identifiers for immune receptors, representing receptor complexes or groups studied for their interactions with antigens or epitopes.","pattern":"^\\d+$","uri_format":"https://www.iedb.org/receptor/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"cedar","name":"Cancer Epitope Database and Analysis Resource","description":"Cancer Epitope Database and Analysis Resource (CEDAR) is a specialized interface providing cancer-focused access to IEDB data with domain-specific analysis tools and workflows.","homepage":"https://cedar.iedb.org/","uri_format":"https://cedar.iedb.org/receptor/$1","first_party":null,"publications":[{"pubmed":"40779104","doi":"10.1007/978-1-0716-4566-6_3","pmc":null,"title":"Using the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025}],"example":null,"status":null}],"homepage":"https://www.iedb.org/","repository":null,"contact":{"name":"Randi Vita","orcid":"0000-0001-8957-7612","email":"rvita@liai.org","github":"rvita"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"47","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"25300482","doi":"10.1093/nar/gku938","pmc":"PMC4384014","title":"The immune epitope database (IEDB) 3.0","year":2014},{"pubmed":"22681406","doi":"10.1111/j.1365-2567.2012.03611.x","pmc":"PMC3461392","title":"The immune epitope database: a historical retrospective of the first decade","year":2012},{"pubmed":"19906713","doi":"10.1093/nar/gkp1004","pmc":"PMC2808938","title":"The immune epitope database 2.0","year":2009},{"pubmed":"16312048","doi":null,"pmc":null,"title":"The immune epitope database and analysis resource: from vision to blueprint","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1204,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iedb.reference":{"prefix":"iedb.reference","name":"Immune Epitope Database References","description":"Identifiers for references, typically linking to sources of evidence such as publications that support data within IEDB.","pattern":"^\\d+$","uri_format":"https://www.iedb.org/reference/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"cedar","name":"Cancer Epitope Database and Analysis Resource","description":"Cancer Epitope Database and Analysis Resource (CEDAR) is a specialized interface providing cancer-focused access to IEDB data with domain-specific analysis tools and workflows.","homepage":"https://cedar.iedb.org/","uri_format":"https://cedar.iedb.org/reference/$1","first_party":null,"publications":[{"pubmed":"40779104","doi":"10.1007/978-1-0716-4566-6_3","pmc":null,"title":"Using the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025}],"example":null,"status":null}],"homepage":"https://www.iedb.org/","repository":null,"contact":{"name":"Randi Vita","orcid":"0000-0001-8957-7612","email":"rvita@liai.org","github":"rvita"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1038233","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"iedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"iedb"},"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"25300482","doi":"10.1093/nar/gku938","pmc":"PMC4384014","title":"The immune epitope database (IEDB) 3.0","year":2014},{"pubmed":"22681406","doi":"10.1111/j.1365-2567.2012.03611.x","pmc":"PMC3461392","title":"The immune epitope database: a historical retrospective of the first decade","year":2012},{"pubmed":"19906713","doi":"10.1093/nar/gkp1004","pmc":"PMC2808938","title":"The immune epitope database 2.0","year":2009},{"pubmed":"16312048","doi":null,"pmc":null,"title":"The immune epitope database and analysis resource: from vision to blueprint","year":2004},{"pubmed":"40779104","doi":"10.1007/978-1-0716-4566-6_3","pmc":null,"title":"Using the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1204,"logo":null,"miriam":{"description":"The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.","examples":["1038233"],"extras":{"miriam_id":"00000865","namespaceEmbeddedInLui":false},"homepage":"https://www.lji.org/","name":"Immune Epitope Database (IEDB)","pattern":"^[0-9]+$","prefix":"iedb","status":"active","uri_format":"https://www.iedb.org/reference/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ieee.author":{"prefix":"ieee.author","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ieeexplore.ieee.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P6479"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an author in IEEE Xplore","examples":["37271072100","37274652000","37393195900"],"name":"IEEE Xplore author ID","pattern":"^[1-9]\\d*$","prefix":"P6479","uri_format":"https://ieeexplore.ieee.org/author/$1","xrefs":{"wikidata":"Q5970536"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ieee.document":{"prefix":"ieee.document","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ieeexplore.ieee.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P6480"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a document in IEEE Xplore","examples":["1580791","668698","761722"],"name":"IEEE Xplore document ID","pattern":"^[1-9]\\d*$","prefix":"P6480","uri_format":"https://ieeexplore.ieee.org/document/$1","xrefs":{"wikidata":"Q5970536"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ietf.language":{"prefix":"ietf.language","name":"Internet Engineering Task Force Language Tag","description":"Shorthand representations of languages and their subtypes","pattern":"^\\w{2,3}(-\\w+)?$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"en-GB","example_extras":["en","ar-SA","aaf"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"2022","wikidata":"P305","wikidata.entity":"Q1059900"},"synonyms":["bcp47"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for language or languoid per the Internet Engineering Task Force; can include a primary language subtag, subtags for script, region, variant, extension, or private-use. Format: 2 or 3 letters, followed by \"-\" if subtags present","examples":["ar-SA","en-GB","hu"],"homepage":"http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry","name":"IETF language tag","prefix":"P305"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The IANA Language Subtag Registry contains language tags (abbreviated language codes) as defined by the Internet Engineering Task Force (IETF). These language tags are used in a number of modern computing standards, such as HTTP, HTML, XML, and RDF. Components of language tags are drawn from other standards such as ISO 639, ISO 15924 and ISO 3166-1.","homepage":"http://www.iana.org/assignments/language-subtag-registry/","license":{"spdx":"CC0-1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"IANA Language Subtag Registry","prefix":"2022","xrefs":{"wikidata":"Q1059900"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iev":{"prefix":"iev","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000000","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IEV","fairsharing":"FAIRsharing.a0yy2x","obofoundry":"iev","prefixcommons":"iev"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure.","examples":["IEV_0000913"],"homepage":"http://www.inoh.org","keywords":["obo","pathway","structure"],"name":"Event (INOH pathway ontology)","pattern":"^IEV_\\d+$","prefix":"iev","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/iev:$1"}],"uri_format":"http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1","xrefs":{"bioportal":"1011"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"domain":"chemistry and biochemistry","homepage":"http://www.inoh.org","name":"Event (INOH pathway ontology)","preferred_prefix":"IEV","prefix":"iev","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"INOH Event Ontology (IEV) is a structured controlled vocabulary of pathway centric biological processes used to annotate biological processes, pathways, sub-pathways in the INOH pathway data. .","homepage":"http://www.obofoundry.org/ontology/iev.html","keywords":["Biology","enzymatic reaction","pathway"],"license":{"name":"https://creativecommons.org/licenses/by/2.1/jp","url":"https://creativecommons.org/licenses/by/2.1/jp/"},"name":"Integrating Network Objects with Hierarchies Event Ontology","prefix":"FAIRsharing.a0yy2x","publications":[{"doi":"10.1002/cfg.432","pubmed":"18629146","title":"The molecule role ontology: an ontology for annotation of signal transduction pathway molecules in the scientific literature","url":"http://doi.org/10.1002/cfg.432","year":2008},{"doi":"10.1093/database/bar052","pubmed":"22120663","title":"INOH: ontology-based highly structured database of signal transduction pathways","url":"http://doi.org/10.1093/database/bar052","year":2011},{"pubmed":"17094236","title":"Event ontology: a pathway-centric ontology for biological processes","url":"https://www.ncbi.nlm.nih.gov/pubmed/17094236","year":2006}],"short_names":["IEV"]},"biocontext":{"prefix":"IEV","uri_format":"http://purl.obolibrary.org/obo/IEV_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ifloprop":{"prefix":"ifloprop","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"ifloprop"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Lexicon of properties and values that can be used in InfoFlora APIs.","examples":["code0001"],"extras":{"miriam_id":"00001125","namespaceEmbeddedInLui":false},"homepage":"https://www.infoflora.ch/","name":"InfoFlora Objects and properties","pattern":"^[A-Za-z0-9]+$","prefix":"ifloprop","status":"active","uri_format":"https://purl.infoflora.ch/concept/ifloprop/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"igrhcellid":{"prefix":"igrhcellid","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ACHN","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"IGRhCellID"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi","name":"Integrated Genomic Resources of human Cell Lines for Identification","prefix":"IGRhCellID","uri_format":"http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"igsn":{"prefix":"igsn","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Jens Klump","orcid":"0000-0001-5911-6022","email":"jens.klump@csiro.au","github":"jklump"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20719","fairsharing":"FAIRsharing.c7f365","miriam":"igsn"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents.","examples":["AU124"],"extras":{"miriam_id":"00000806","namespaceEmbeddedInLui":false},"homepage":"https://ev.igsn.org/home","name":"International Generic Sample Number","pattern":"^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$","prefix":"igsn","status":"active","uri_format":"http://igsn.org/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"An IGSN ID is a globally unique and persistent identifier for physical samples in all scientific fields. An IGSN ID can be applied to an individual sample, an aggregation of samples, or to a feature-of-interest (the real-world feature that the sample is taken from). From 2021, IGSN IDs are functionally DOIs and are registered with metadata encoded in the DataCite Metadata Schema. The IGSN ID, previously known as an \"International GeoSample Number\", naming schema has changed, to reflects the expanding scope and utilization as a partnership agreement between DataCite and the IGSN e.V.","homepage":"https://www.igsn.org","keywords":["Hydrogeology","Geochemistry","Environmental Science","Omics","Archaeology","Geology","Earth Science","environmental material","centrally registered identifier","Biospecimen"],"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBaVVDIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--4d19e53906f86cdaca6a9752fde1dd82276b7f22/igsn-original.jpg?disposition=inline","name":"International Generic Sample Number","prefix":"FAIRsharing.c7f365","publications":[{"doi":"10.5334/dsj-2017-002","title":"Utilizing the International Geo Sample Number Concept in Continental Scientific Drilling During ICDP Expedition COSC-1","url":"http://dx.doi.org/10.5334/dsj-2017-002","year":2017},{"doi":"10.5334/dsj-2021-033","title":"Towards Globally Unique Identification of Physical Samples: Governance and Technical Implementation of the IGSN Global Sample Number","url":"http://dx.doi.org/10.5334/dsj-2021-033","year":2021},{"doi":"10.5334/dsj-2023-005","title":"Scaling Identifiers and their Metadata to Gigascale: An Architecture to Tackle the Challenges of Volume and Variety","url":"http://dx.doi.org/10.5334/dsj-2023-005","year":2023},{"doi":"10.1007/978-3-030-85040-1_162","title":"International Generic Sample Number","url":"http://dx.doi.org/10.1007/978-3-030-85040-1_162","year":2023},{"doi":"10.5281/zenodo.5118289","title":"IGSN 2040 Summary Report: Defining the Future of the IGSN as a Global Persistent Identifier for Material Samples","url":"https://doi.org/10.5281/zenodo.5118289","year":2021},{"doi":"10.5281/zenodo.17254975","title":"Archaeological Sample Metadata Profile","url":"https://doi.org/10.5281/zenodo.17254975","year":2025}],"repository":"https://igsn.github.io/","short_names":["IGSN (Generic)"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"An IGSN ID is a globally unique and persistent identifier for material samples. The core purpose of the IGSN ID is to enable transparent and traceable connections between research activities and objects, including samples, collections, instruments, grants, data, publications, people, and organizations.","homepage":"https://ev.igsn.org","name":"International Generic Sample Number","prefix":"20719","short_names":["IGSN"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"igsr":{"prefix":"igsr","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Paul Flicek","orcid":"0000-0002-3897-7955","email":"flicek@ebi.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NA06985","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"IGSR","re3data":"r3d100010180"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31584097","doi":"10.1093/nar/gkz836","pmc":"PMC6943028","title":"The International Genome Sample Resource (IGSR) collection of open human genomic variation resources","year":2020},{"pubmed":"26432245","doi":"10.1038/nature15393","pmc":"PMC4750478","title":"A global reference for human genetic variation","year":2015}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Biological sample resources","homepage":"https://www.internationalgenome.org/","name":"International Genome Sample Resource","prefix":"IGSR","uri_format":"https://www.internationalgenome.org/data-portal/sample/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"The 1000 Genomes Project is an international collaboration to produce an extensive public catalog of human genetic variation, including SNPs and structural variants, and their haplotype contexts. This resource will support genome-wide association studies and other medical research studies.\nThe genomes of about 2500 unidentified people from about 25 populations around the world will be sequenced using next-generation sequencing technologies. The results of the study will be freely and publicly accessible to researchers worldwide.\nThe International Genome Sample Resource (IGSR) has been established at EMBL-EBI to continue supporting data generated by the 1000 Genomes Project, supplemented with new data and new analysis.","homepage":"https://www.internationalgenome.org/","name":"1000 Genomes","prefix":"r3d100010180","prefix_synonyms":["IGSR - International Genome Sample Resource","Thousand Genomes"],"xrefs":{"doi":"10.17616/R3CP4M","omics":"00261"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ihw":{"prefix":"ihw","name":"International Histocompatibility Workshop cell lines","description":"The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.","pattern":"^IHW\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IHW09326","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"IHW"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html","name":"International Histocompatibility Workshop cell lines","prefix":"IHW"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iirds.core":{"prefix":"iirds.core","name":"International Standard for Intelligent Information Request and Delivery Core Ontology","description":"An ontology encoding the core metadata based on the Intelligent Information Request and Delivery (iiRDS) standard","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/iirds-consortium/models","repository":"https://github.com/iirds-consortium/models","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Action","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"iirds"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/iirds-consortium/models/main/iirds-core.rdf"}],"contact":{"email":"comment.iirds@tekom.de"},"homepage":"https://iirds.org/index.php","keywords":["NFDI4ING","computer science"],"name":"IIRDS CORE Ontology","prefix":"iirds","tracker":"https://github.com/iirds-consortium/models/issues","uri_format":"http://iirds.tekom.de/iirds#$1"}},"iirds.mch":{"prefix":"iirds.mch","name":"International Standard for Intelligent Information Request and Delivery Machinery Ontology","description":"An ontology encoding machinery based on the Intelligent Information Request and Delivery (iiRDS) standard","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/iirds-consortium/models","repository":"https://github.com/iirds-consortium/models","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ConsumableSupply","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"iirdsmch"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/iirds-consortium/models/main/iirds-machinery.rdf"}],"contact":{"email":"comment.iirds@tekom.de"},"homepage":"https://iirds.org/index.php","keywords":["NFDI4ING","computer science"],"name":"IIRDS Machinery Ontology","prefix":"iirdsmch","tracker":"https://github.com/iirds-consortium/models/issues","uri_format":"http://iirds.tekom.de/iirds/domain/machinery#$1"}},"iirds.sft":{"prefix":"iirds.sft","name":"International Standard for Intelligent Information Request and Delivery Software Ontology","description":"An ontology encoding software based on the Intelligent Information Request and Delivery (iiRDS) standard","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/iirds-consortium/models","repository":"https://github.com/iirds-consortium/models","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"iirdsSoftwareDomainEntity","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"iirdssft"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/iirds-consortium/models/main/iirds-software.rdf"}],"contact":{"email":"comment.iirds@tekom.de"},"homepage":"https://iirds.org/index.php","keywords":["NFDI4ING","computer science"],"name":"IIRDS Software Ontology","prefix":"iirdssft","tracker":"https://github.com/iirds-consortium/models/issues","uri_format":"http://iirds.tekom.de/iirds/domain/software#$1"}},"illumina.probe":{"prefix":"illumina.probe","name":"Illumina Probe Identifier","description":"Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.","pattern":"^ILMN_\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ILMN_129894","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["transcriptomics"],"domain":null,"references":["https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-9184/A-GEOD-9184_comments.txt"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imanis":{"prefix":"imanis","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CL070","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"Imanis"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.imanislife.com/collections/cell-lines/","name":"Imanis Life Sciences cell line products","prefix":"Imanis","uri_format":"https://www.imanislife.com/?s=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imdrf":{"prefix":"imdrf","name":"International Medical Device Regulators Forum","description":"The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.imdrf.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://www.fda.gov/medical-devices/mandatory-reporting-requirements-manufacturers-importers-and-device-user-facilities/mdr-adverse-event-codes"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":true,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imex":{"prefix":"imex","name":"International Molecular Exchange","description":null,"pattern":"^\\d+(-\\d+)?$","uri_format":"https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"intact.search","name":"IntAct Search","description":"Search page on IntAct","homepage":"https://www.ebi.ac.uk/intact","uri_format":"https://www.ebi.ac.uk/intact/search?query=IM-$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Sandra Orchard","orcid":"0000-0002-8878-3972","email":"orchard@ebi.ac.uk","github":"sandraorchard"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02catss52","wikidata":null,"name":"European Bioinformatics Institute","partnered":false}],"example":"19210-3","example_extras":["19210"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"IM","banana_peel":"-","deprecated":null,"mappings":{"biocontext":"IMEX","miriam":"imex","n2t":"imex","pathguide":"422","prefixcommons":"imex","re3data":"r3d100010669"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17893861","doi":"10.1002/pmic.200700286","pmc":null,"title":"Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition","year":2007},{"pubmed":"17893861","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.","examples":["IM-19210-3"],"extras":{"miriam_id":"00000122","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"IMEx","pattern":"^IM-\\d+(-?)(\\d+?)$","prefix":"imex","providers":[{"code":"ebi","description":"IMEx Consortium running at EBI","homepage":"https://www.imexconsortium.org/","name":"IMEx Consortium running at EBI","uri_format":"https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/intact/search?query=$1#interaction"},"n2t":{"description":"The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.","examples":["IM-19210-3"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.imexconsortium.org/","name":"IMEx Consortium running at EBI","pattern":"^IM-\\d+(-?)(\\d+?)$","prefix":"imex","uri_format":"https://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1"},"prefixcommons":{"description":"The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.","examples":["IM-12080-80"],"homepage":"http://disber.net/imexdrupal/","keywords":["molecule","interaction"],"license":{"name":"http://disber.net/imexdrupal/node/5","url":"http://disber.net/imexdrupal/node/5"},"name":"International Molecular Exchange","pattern":"^IM-\\d+(-?)(\\d+?)$","prefix":"imex","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imex:$1"}],"publications":[{"pubmed":"17893861"}],"uri_format":"http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IMEX","uri_format":"http://identifiers.org/imex/$1"},"edam":null,"re3data":{"description":"The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License","homepage":"https://www.imexconsortium.org/","name":"IMEx","prefix":"r3d100010669","prefix_synonyms":["The International Molecular Exchange Consortium"],"xrefs":{"doi":"10.17616/R3090W","fairsharing.legacy":"3507","nif":"0000-00447"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.imexconsortium.org/","keywords":["PSI-MI"],"name":"The International Molecular Exchange Consortium","prefix":"422","short_names":["IMEx"]},"tib":null},"img.gene":{"prefix":"img.gene","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Nikos C. Kyrpides","orcid":"0000-0002-6131-0462","email":"nckyrpides@lbl.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IMG.GENE","miriam":"img.gene","n2t":"img.gene","prefixcommons":"img.gene"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17933782","doi":"10.1093/nar/gkm846","pmc":"PMC2238897","title":"The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.","examples":["638309541"],"extras":{"miriam_id":"00000176","namespaceEmbeddedInLui":false},"homepage":"http://img.jgi.doe.gov/","name":"Integrated Microbial Genomes Gene","pattern":"^\\d+$","prefix":"img.gene","status":"active","uri_format":"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"},"n2t":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.","examples":["638309541"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://img.jgi.doe.gov/","name":"Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory","pattern":"^\\d+$","prefix":"img.gene","uri_format":"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"},"prefixcommons":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.","examples":["638309541"],"keywords":["gene","genome"],"name":"Integrated Microbial Genomes Gene","pattern":"^\\d+$","prefix":"img.gene","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/img.gene:$1"}],"publications":[{"pubmed":"17933782"}],"uri_format":"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IMG.GENE","uri_format":"http://identifiers.org/img.gene/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"img.taxon":{"prefix":"img.taxon","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Nikos C. Kyrpides","orcid":"0000-0002-6131-0462","email":"nckyrpides@lbl.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IMG.TAXON","miriam":"img.taxon","n2t":"img.taxon","prefixcommons":"img.taxon"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17933782","doi":"10.1093/nar/gkm846","pmc":"PMC2238897","title":"The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.","examples":["648028003"],"extras":{"miriam_id":"00000175","namespaceEmbeddedInLui":false},"homepage":"http://img.jgi.doe.gov/","name":"Integrated Microbial Genomes Taxon","pattern":"^\\d+$","prefix":"img.taxon","status":"active","uri_format":"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"},"n2t":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.","examples":["648028003"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://img.jgi.doe.gov/","name":"Integrated Microbial Genomes Taxon at Lawrence Berkeley National Laboratory","pattern":"^\\d+$","prefix":"img.taxon","uri_format":"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"},"prefixcommons":{"description":"The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.","examples":["648028003"],"keywords":["genome","taxonomy"],"name":"Integrated Microbial Genomes Taxon","pattern":"^\\d+$","prefix":"img.taxon","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/img.taxon:$1"}],"publications":[{"pubmed":"17933782"}],"uri_format":"http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&taxon_oid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IMG.TAXON","uri_format":"http://identifiers.org/img.taxon/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imgt.hla":{"prefix":"imgt.hla","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02catss52","wikidata":null,"name":"European Bioinformatics Institute","partnered":false}],"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IMGT.HLA","cellosaurus":"IPD-IMGT/HLA","edam":"2773","go":"IMGT_HLA","integbio":"nbdc00106","miriam":"imgt.hla","n2t":"imgt.hla","ncbi":"IMGT/HLA","prefixcommons":"imgthla","re3data":"r3d100010804"},"synonyms":["IPD-IMGT/HLA"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31667505","doi":"10.1093/nar/gkz950","pmc":"PMC7145640","title":"IPD-IMGT/HLA Database","year":2020},{"pubmed":"25414341","doi":"10.1093/nar/gku1161","pmc":"PMC4383959","title":"The IPD and IMGT/HLA database: allele variant databases","year":2014},{"pubmed":"18838392","doi":"10.1093/nar/gkn662","pmc":"PMC2686596","title":"The IMGT/HLA database","year":2008},{"pubmed":"18449991","doi":"10.1007/978-1-60327-118-9_3","pmc":null,"title":"The IMGT/HLA database","year":2007},{"pubmed":"16381979","doi":"10.1093/nar/gkj088","pmc":"PMC1347451","title":"IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences","year":2006},{"pubmed":"16944494","doi":"10.1002/humu.20406","pmc":null,"title":"The IMGT/HLA and IPD databases","year":2006},{"pubmed":"12520010","doi":"10.1093/nar/gkg070","pmc":"PMC165517","title":"IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex","year":2003},{"pubmed":"11125094","doi":"10.1093/nar/29.1.210","pmc":"PMC29780","title":"IMGT/HLA Database--a sequence database for the human major histocompatibility complex","year":2001},{"pubmed":"10777106","doi":"10.1034/j.1399-0039.2000.550314.x","pmc":null,"title":"IMGT/HLA database--a sequence database for the human major histocompatibility complex","year":2000},{"pubmed":"31667505","doi":"10.1093/nar/gkz950","pmc":null,"title":null,"year":null},{"pubmed":"26826444","doi":"10.1016/j.humimm.2016.01.020","pmc":null,"title":null,"year":null},{"pubmed":"25048120","doi":"10.1007/978-1-4939-1115-8_5","pmc":null,"title":null,"year":null},{"pubmed":"16381979","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.ebi.ac.uk/ipd/imgt/hla/assets/images/hla_logo_2014-e4fa904dc2.svg","miriam":{"description":"IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.","examples":["A*01:01:01:01"],"extras":{"miriam_id":"00000331","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/imgt/hla/allele.html","name":"IMGT HLA","pattern":"^[A-Z0-9*:]+$","prefix":"imgt.hla","status":"active","uri_format":"https://www.ebi.ac.uk/ipd/imgt/hla/alleles/?query=eq(name,%22$1%22)"},"n2t":{"description":"IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.","examples":["A*01:01:01:01"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/imgt/hla/allele.html","name":"IMGT HLA at EBI","pattern":"^[A-Z0-9*:]+$","prefix":"imgt.hla","uri_format":"https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1"},"prefixcommons":{"description":"The IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (HLA) and includes the official sequences for the WHO Nomenclature Committee For Factors of the HLA System.","examples":["A*01:01:01:01"],"homepage":"http://www.ebi.ac.uk/imgt/hla/","keywords":["DNA","RNA","protein"],"name":"IMGT/HLA","pattern":"^[A-Z0-9*:]+$","prefix":"imgthla","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imgthla:$1"}],"publications":[{"pubmed":"16381979"}],"uri_format":"http://www.ebi.ac.uk/cgi-bin/ipd/imgt/hla/get_allele.cgi?"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.ebi.ac.uk/imgt/hla","name":"IMGT/HLA human major histocompatibility complex sequence database","prefix":"IMGT_HLA"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["HLA00031"],"homepage":"http://www.ebi.ac.uk/imgt/hla/","name":"Immunogenetics database, human MHC","prefix":"IMGT/HLA"},"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://www.ebi.ac.uk/ipd/imgt/hla/","name":"IPD-IMGT/HLA database","prefix":"IPD-IMGT/HLA","uri_format":"https://www.ebi.ac.uk/ipd/imgt/hla/cells/cell/?cellid=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IMGT.HLA","uri_format":"http://identifiers.org/imgt.hla/$1"},"edam":{"description":"Identifier of a human major histocompatibility complex (HLA) or other protein from the IMGT/HLA database.","name":"IMGT/HLA","prefix":"2773"},"re3data":{"description":"The IPD-IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (MHC) and includes the official sequences named by the WHO Nomenclature Committee For Factors of the HLA System. The IPD-IMGT/HLA Database is part of the international ImMunoGeneTics project (IMGT).\nThe database uses the 2010 naming convention for HLA alleles in all tools herein. To aid in the adoption of the new nomenclature, all search tools can be used with both the current and pre-2010 allele designations. The pre-2010 nomenclature designations are only used where older reports or outputs have been made available for download.","homepage":"https://www.ebi.ac.uk/ipd/imgt/hla/","license":{"name":"CC"},"name":"IMGT/HLA Database","prefix":"r3d100010804","prefix_synonyms":["IPD-IMGT/HLA","ImMunoGeneTics/HLA Database","International ImMunoGeneTics information system/Humane Leukozyten Antigene Database"],"xrefs":{"doi":"10.17616/R3T31N","nif":"0000-03014"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"IMGT/HLA is a database that specializes in the human major histocompatibility complex and its sequences.\nThere are 8,949 allele sequences that are available, and of them, 6919 are HLA Class I Alleles, 1,875 are HLA Class II Alleles and 155 are other non-HLA Alleles.\nInformation about the source material, from which the sequences were obtained, is provided in detail.\nAuthors of publications regularly check their data against IMGT/HLA first to ascertain the official name of their sequence to avoid confusion due to multiple names for the same product.\nAn IMGT/HLA Alignment Tool is provided as well as protein and nucleotide Blast search options.","homepage":"http://www.ebi.ac.uk/imgt/hla/","keywords":["Genome/Gene","Cell/Organelle","Ontology/Terminology/Nomenclature","Sequence"],"name":"IPD-IMGT/HLA","prefix":"nbdc00106","publications":[{"doi":"10.1093/nar/gkz950","pubmed":"31667505"},{"doi":"10.1016/j.humimm.2016.01.020","pubmed":"26826444"},{"doi":"10.1007/978-1-4939-1115-8_5","pubmed":"25048120"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000171"}},"pathguide":null,"tib":null},"imgt.ligm":{"prefix":"imgt.ligm","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Marie-Paule Lefranc","orcid":"0000-0003-0116-9353","email":"marie-paule.lefranc@umontpellier.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IMGT.LIGM","go":"IMGT_LIGM","miriam":"imgt.ligm","n2t":"imgt.ligm","ncbi":"IMGT/LIGM","prefixcommons":"imgt.ligm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16381979","doi":"10.1093/nar/gkj088","pmc":"PMC1347451","title":"IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.","examples":["M94112"],"extras":{"miriam_id":"00000287","namespaceEmbeddedInLui":false},"homepage":"http://www.imgt.org/","name":"IMGT LIGM","pattern":"^M\\d+$","prefix":"imgt.ligm","status":"active","uri_format":"http://www.imgt.org/ligmdb/view?id=$1"},"n2t":{"description":"IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.","examples":["M94112"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.imgt.org/","name":"IMGT LIGM at CNRS","pattern":"^M\\d+$","prefix":"imgt.ligm","uri_format":"http://www.imgt.org/ligmdb/view?id=$1"},"prefixcommons":{"description":"MGT/LIGM-DB is the IMGT comprehensive database of immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences from human and other vertebrate species.","examples":["A68511"],"homepage":"http://imgt.cines.fr/cgi-bin/IMGTlect.jv","keywords":["DNA"],"name":"IMGT/LIGM-DB","pattern":"^[A-Z]\\d+$","prefix":"imgt.ligm","prefix_synonyms":["imgt_ligmdb"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imgt.ligm:$1"}],"publications":[{"pubmed":"16381979"}]},"wikidata":null,"wikidata_entity":null,"go":{"description":"Database of immunoglobulins and T cell receptors from human and other vertebrates, with translation for fully annotated sequences.","homepage":"http://www.imgt.org/","name":"ImMunoGeneTics database covering immunoglobulins and T-cell receptors","prefix":"IMGT_LIGM"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["U03895"],"homepage":"http://www.imgt.org/IMGTinformation/LIGM.html","name":"Immunogenetics database, immunoglobulins and T-cell receptors","prefix":"IMGT/LIGM"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IMGT.LIGM","uri_format":"http://identifiers.org/imgt.ligm/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imgt.primerdb":{"prefix":"imgt.primerdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"imgt.primerdb","re3data":"r3d100012535"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR).","examples":["IPP900099"],"homepage":"http://imgt.org/IMGTPrimerDB/","keywords":["DNA"],"name":"IMGT/PRIMER-DB","pattern":"^IPP\\d+$","prefix":"imgt.primerdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imgt.primerdb:$1"}],"uri_format":"http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR).","homepage":"https://www.imgt.org/IMGTPrimerDB/","license":{"name":"Copyrights"},"name":"IMGT/PRIMER-DB","prefix":"r3d100012535","prefix_synonyms":["ImMunoGeneTics/PRIMER-DB","International ImMunoGeneTics information system/PRIMER-Database"],"xrefs":{"doi":"10.17616/R3R19C"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imotdb":{"prefix":"imotdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"pathguide":"207","prefixcommons":"imotdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members.","examples":["53784"],"homepage":"http://caps.ncbs.res.in/imotdb/","keywords":["interaction","protein"],"name":"Database of Spatially Interacting Motifs in Proteins","pattern":"^\\d+$","prefix":"imotdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imotdb:$1"}],"uri_format":"http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://caps.ncbs.res.in/imotdb/","name":"Interacting motifs in proteins database","prefix":"207","short_names":["iMOTdb"]},"tib":null},"imr":{"prefix":"imr","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IMR","fairsharing":"FAIRsharing.2etax0","obofoundry":"imr","prefixcommons":"imr"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data.","examples":["IMR_0800118"],"homepage":"http://www.inoh.org","keywords":["ontology","protein","small molecule"],"name":"MoleculeRole Ontology (INOH Protein name/family name ontology)","pattern":"^IMR_\\d+$","prefix":"imr","prefix_synonyms":["molecule_role"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/imr:$1"}],"uri_format":"http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1","xrefs":{"bioportal":"1029"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"curator@inoh.org","name":"INOH curators"},"domain":"chemistry and biochemistry","homepage":"http://www.inoh.org","name":"Molecule role (INOH Protein name/family name ontology)","preferred_prefix":"IMR","prefix":"imr","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"A structured controlled vocabulary of concrete protein names and generic (abstract) protein names. This ontology is a INOH pathway annotation ontology, one of a set of ontologies intended to be used in pathway data annotation to ease data integration. IMR is part of the BioPAX working group.","homepage":"http://purl.bioontology.org/ontology/IMR","keywords":["Life Science","protein"],"name":"INOH Molecule Role","prefix":"FAIRsharing.2etax0","publications":[{"doi":"10.1002/cfg.432","pubmed":"18629146","title":"The molecule role ontology: an ontology for annotation of signal transduction pathway molecules in the scientific literature","url":"http://doi.org/10.1002/cfg.432","year":2008}],"short_names":["IMR"]},"biocontext":{"prefix":"IMR","uri_format":"http://purl.obolibrary.org/obo/IMR_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imsr.apb":{"prefix":"imsr.apb","name":null,"description":"The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]","pattern":"^\\d+$","uri_format":"https://pb.apf.edu.au/phenbank/strain.html?id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"7345","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"rrid":"IMSR_APB"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"https://pb.apf.edu.au/phenbank/homePage.html","keywords":["allele","alteration","chromosome","database","embryo","gene","live mouse","murine","mutation","phenotype","sperm","strain","transgene","transgenic"],"name":"NHMRC Australian PhenomeBank","prefix":"IMSR_APB","short_names":["APB"],"xrefs":{"scr":"006149"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imsr_em":{"prefix":"imsr_em","name":null,"description":"Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]","pattern":"^\\d+$","uri_format":"https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Damian Smedley","orcid":"0000-0002-5836-9850","email":"d.smedley@qmul.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"11478","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"rrid":"IMSR_EM"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"https://www.infrafrontier.eu/emma/","keywords":["","mouse","mutant mouse repository","mutant mouse strain","mutant strain"],"name":"European Mouse Mutant Archive","prefix":"IMSR_EM","publications":[{"pubmed":"19783817"},{"pubmed":"17709347"}],"short_names":["EMMA"],"xrefs":{"scr":"006136"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"imsr_tac":{"prefix":"imsr_tac","name":null,"description":"Supplier of mice for research purposes. [from RRID]","pattern":null,"uri_format":"https://scicrunch.org/resolver/RRID:IMSR_TAC_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1178","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"rrid":"IMSR_TAC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"https://www.taconic.com/","keywords":["gene","genetic engineering","knockout","mice","model","mouse","repository","research","strain","subject","supply","transgenic"],"name":"Taconic Biosciences","prefix":"IMSR_TAC","short_names":["TAC, TB"],"xrefs":{"scr":"016410"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inaturalist.observation":{"prefix":"inaturalist.observation","name":"iNaturalist Observation","description":"The identifier for an observation in iNaturalist","pattern":"^[1-9]\\d*$","uri_format":"https://www.inaturalist.org/observations/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.inaturalist.org/observations","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"36010371","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P5683"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Pierre-Marie Allard","orcid":"0000-0003-3389-2191","email":null,"github":"oolonek"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":517,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"observation identifier in iNaturalist","name":"iNaturalist observation ID","pattern":"^[1-9]\\d*$","prefix":"P5683","uri_format":"https://www.inaturalist.org/observations/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inaturalist.place":{"prefix":"inaturalist.place","name":"iNaturalist Place","description":"Identifier for a place in iNaturalist","pattern":"^[1-9]\\d*$","uri_format":"https://www.inaturalist.org/places/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.inaturalist.org/places","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"7207","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P7471"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a place in iNaturalist","examples":["13378","49955","7207","98521"],"name":"iNaturalist place ID","pattern":"^[1-9]\\d*$","prefix":"P7471","uri_format":"https://www.inaturalist.org/places/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inaturalist.taxon":{"prefix":"inaturalist.taxon","name":"iNaturalist Taxonomy","description":"Identifier for a species in iNaturalist","pattern":"^[1-9]\\d{0,6}$","uri_format":"https://www.inaturalist.org/taxa/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.inaturalist.org/taxa","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"21723","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P3151"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in iNaturalist","examples":["1","21723","9999"],"name":"iNaturalist taxon ID","pattern":"^[1-9]\\d{0,6}$","prefix":"P3151","uri_format":"https://inaturalist.org/taxa/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inaturalist.user":{"prefix":"inaturalist.user","name":"iNaturalist User","description":"Identifier for a user in iNaturalist","pattern":"^[1-9]\\d*$","uri_format":"https://www.inaturalist.org/users/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.inaturalist.org/users","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1426686","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["person"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inchi":{"prefix":"inchi","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Stephen R. Heller","orcid":"0000-0002-5538-8482","email":"jmg11@cam.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INCHI","fairsharing":"FAIRsharing.ddk9t9","miriam":"inchi","n2t":"inchi","wikidata":"P234","wikidata.entity":"Q203250"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34030732","doi":"10.1186/s13321-021-00517-z","pmc":"PMC8147039","title":"InChI version 1.06: now more than 99.99% reliable","year":2021},{"pubmed":"26136848","doi":"10.1186/s13321-015-0068-4","pmc":"PMC4486400","title":"InChI, the IUPAC International Chemical Identifier","year":2015},{"pubmed":"26081259","doi":"10.1007/s10822-015-9854-3","pmc":null,"title":"Many InChIs and quite some feat","year":2015},{"pubmed":"26136848","doi":"10.1186/s13321-015-0068-4","pmc":null,"title":"InChI, the IUPAC International Chemical Identifier","year":2015},{"pubmed":"26081259","doi":"10.1007/s10822-015-9854-3","pmc":null,"title":"Many InChIs and quite some feat","year":2015},{"pubmed":null,"doi":"10.1186/s13321-021-00517-z","pmc":null,"title":"InChI version 1.06: now more than 99.99% reliable","year":2021},{"pubmed":null,"doi":"10.1186/s13321-024-00847-8","pmc":null,"title":"InChI isotopologue and isotopomer specifications","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.","examples":["InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"],"extras":{"miriam_id":"00000383","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/chebi/","name":"InChI","pattern":"^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$","prefix":"inchi","providers":[{"code":"um","description":"InChI through RDF Open Molecules","homepage":"http://rdf.openmolecules.net/","name":"InChI through RDF Open Molecules","uri_format":"http://rdf.openmolecules.net/?$1"},{"code":"","description":"InChI through NIST","homepage":"http://webbook.nist.gov/chemistry","name":"InChI through NIST","uri_format":"http://webbook.nist.gov/cgi/cbook.cgi?$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString=$1"},"n2t":{"description":"The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.","examples":["InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://webbook.nist.gov/chemistry","name":"InChI through NIST","pattern":"^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$","prefix":"inchi","uri_format":"http://webbook.nist.gov/cgi/cbook.cgi?$1"},"prefixcommons":null,"wikidata":{"description":"International Chemical Identifier","examples":["InChI=1S/C10H9NO2/c12-10(13)5-7-6-11-9-4-2-1-3-8(7)9/h1-4,6,11H,5H2,(H,12,13)","InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"],"name":"InChI","pattern":"^InChI=1S?/([0-9]*[A-Z][ub]?[a-z]?[0-9]*\\.?)+(/[0-9A-Za-z+\\-(),.*;?]+)*$","prefix":"P234","uri_format":"https://chemapps.stolaf.edu/jmol/jmol.php?&model=$1","xrefs":{"miriam":"inchi","wikidata":"Q203250"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"Originally developed by the International Union of Pure and Applied Chemistry (IUPAC), the IUPAC International Chemical Identifier (InChI) is a machine-readable string generated from a chemical structure. InChIs are unique to the compound they describe and can encode absolute stereochemistry making chemicals and chemistry machine-readable and discoverable. A simple analogy is that InChI is the bar-code for chemistry and chemical structures. A hashed fixed-length version of the InChI, the InChIKey, is also widely used. The InChI format and algorithm are non-proprietary and the software is open source, with ongoing development done by the community. A number of IUPAC working groups are working on extensions and new applications of the standard.","homepage":"https://www.inchi-trust.org/","keywords":["Cheminformatics","Chemistry","Structure","Chemical structure image","molecular entity","chemical entity","centrally registered identifier"],"license":{"url":"https://opensource.org/licenses/mit"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBcUVFIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--250afbf70b1e3f9c188231ff2fb50477040a71f5/inchi-wheel.png?disposition=inline","name":"IUPAC International Chemical Identifier","prefix":"FAIRsharing.ddk9t9","publications":[{"doi":"10.1186/s13321-015-0068-4","pubmed":"26136848","title":"InChI, the IUPAC International Chemical Identifier","url":"http://doi.org/10.1186/s13321-015-0068-4","year":2015},{"doi":"10.1007/s10822-015-9854-3","pubmed":"26081259","title":"Many InChIs and quite some feat","url":"http://doi.org/10.1007/s10822-015-9854-3","year":2015},{"doi":"10.1186/s13321-021-00517-z","title":"InChI version 1.06: now more than 99.99% reliable","url":"http://dx.doi.org/10.1186/s13321-021-00517-z","year":2021},{"doi":"10.1186/s13321-024-00847-8","title":"InChI isotopologue and isotopomer specifications","url":"http://dx.doi.org/10.1186/s13321-024-00847-8","year":2024}],"repository":"https://github.com/IUPAC-InChI/InChI","short_names":["InChI"]},"biocontext":{"prefix":"INCHI","uri_format":"http://identifiers.org/inchi/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inchikey":{"prefix":"inchikey","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INCHIKEY","miriam":"inchikey","n2t":"inchikey","togoid":"InchiKey","wikidata":"P235","wikidata.entity":"Q21445422"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.","examples":["RYYVLZVUVIJVGH-UHFFFAOYSA-N"],"extras":{"miriam_id":"00000387","namespaceEmbeddedInLui":false},"homepage":"http://www.chemspider.com/","name":"InChIKey","pattern":"^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?$","prefix":"inchikey","providers":[{"code":"scholia","description":"Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.","homepage":"https://scholia.toolforge.org/","name":"Scholia","uri_format":"https://scholia.toolforge.org/inchikey/$1"}],"status":"active","uri_format":"https://www.chemspider.com/search?params=$1"},"n2t":{"description":"The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.","examples":["RYYVLZVUVIJVGH-UHFFFAOYSA-N"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://cactus.nci.nih.gov/chemical/structure","name":"InChiKey resolver at NCI","pattern":"^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?","prefix":"inchikey","uri_format":"http://cactus.nci.nih.gov/chemical/structure/$1/names"},"prefixcommons":null,"wikidata":{"description":"a hashed version of the full standard InChI","examples":["LFQSCWFLJHTTHZ-UHFFFAOYSA-N","PCHJSUWPFVWCPO-UHFFFAOYSA-N"],"name":"InChIKey","pattern":"^[A-Z]{14}-[A-Z]{10}-[A-Z]$","prefix":"P235","uri_format":"https://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pccompound&term=%22$1%22%5BInChIKey%5D","xrefs":{"miriam":"inchikey","wikidata":"Q21445422"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INCHIKEY","uri_format":"http://identifiers.org/inchikey/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"examples":["RYYVLZVUVIJVGH-UHFFFAOYSA-N","RZWGTXHSYZGXKF-UHFFFAOYSA-N","RQQIIXFYTHWFKW-ZETCQYMHSA-N","RALAARQREFCZJO-UHFFFAOYSA-N","HVFRJJDZWVSUIB-UHFFFAOYSA-N","KVNZVXVZQFTXNA-UHFFFAOYSA-N","KVQUJTYBWCGJRS-UHFFFAOYSA-N","AFGLQVAJWVTAJT-UHFFFAOYSA-N","LHISABQPMWXWCC-UHFFFAOYSA-N","ZSXCHLJCWRSMMS-UHFFFAOYSA-N"],"keywords":["Compound"],"name":"InChIKey","pattern":"^(?[A-Z]{14}\\-[A-Z]{10}(?:\\-[A-Z])?)$","prefix":"InchiKey","uri_format":"http://identifiers.org/inchikey/$1"},"integbio":null,"pathguide":null,"tib":null},"infores":{"prefix":"infores","name":"Information Resource Registry","description":"The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a short description, and a URL to more information about that resource.","pattern":"^[a-z0-9-_.]+$","uri_format":"https://w3id.org/information-resource-registry/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://biolink.github.io/information-resource-registry/","repository":"https://github.com/biolink/information-resource-registry","contact":{"name":"Sierra Moxon","orcid":"0000-0002-8719-7760","email":"smoxon@lbl.gov","github":"sierra-moxon"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"agrkb","example_extras":null,"example_decoys":null,"license":"Apache-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1601,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"informall":{"prefix":"informall","name":"InformAll Allergenic Food Database","description":"The InformAll database was developed to provide a credible source of information on allergenic food materials of both plant and animal origin.","pattern":"^\\d+$","uri_format":"http://research.bmh.manchester.ac.uk/informall/allergenic-food/?FoodId=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://research.bmh.manchester.ac.uk/informAll/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"410","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":["doid"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1311,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"infosecsos":{"prefix":"infosecsos","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accept","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"infosecsos"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/rmbelmont/InfoSecSoS_Ontology/main/InfoSecSoS.rdf"}],"description":"InfoSecSoS - Ontology for Information Security Management in Systems-of-Systems","extras":{"version.iri":"http://www.labesc.unirio.br/InfoSecSoS"},"homepage":"https://zenodo.org/record/6621882","keywords":["NFDI4ING","engineering"],"name":"InfoSecSoS Ontology","prefix":"infosecsos","uri_format":"http://www.labesc.unirio.br/InfoSecSoS#$1"}},"inhand":{"prefix":"inhand","name":"The International Harmonization of Nomenclature and Diagnostic criteria","description":"The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.goreni.org/gr3_nomenclature.php","repository":null,"contact":{"name":"Jack R Harkema","orcid":"0000-0003-4682-0824","email":"harkemaj@msu.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.9gqfpm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20032296","doi":"10.1177/0192623309353423","pmc":null,"title":"Proliferative and nonproliferative lesions of the rat and mouse respiratory tract","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This nomenclature is available via email. Truly a disgrace.","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":true,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"Standard reference for nomenclature and diagnostic criteria in toxicologic pathology.","homepage":"http://www.goreni.org/","keywords":["Biomedical Science","disease","toxicity"],"license":{"url":"https://www.goreni.org/gr3_data_protection.php"},"name":"International Harmonization of Nomenclature and Diagnostic criteria","prefix":"FAIRsharing.9gqfpm","publications":[{"doi":"10.1177/0192623309353423","pubmed":"20032296","title":"Proliferative and nonproliferative lesions of the rat and mouse respiratory tract","url":"http://doi.org/10.1177/0192623309353423","year":2010}],"short_names":["INHAND"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inn":{"prefix":"inn","name":"International Nonproprietary Names","description":"Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.","pattern":null,"uri_format":"https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"dotad","name":"Database Of Therapeutic Antibody Developability","description":"Database Of Therapeutic Antibody Developability (DOTAD) provides comprehensive developability assessments and annotations for therapeutic antibodies referenced by their INN names.","homepage":"https://i.uestc.edu.cn/DOTAD/","uri_format":"https://i.uestc.edu.cn/DOTAD/detail.html?INN=$1","first_party":null,"publications":[{"pubmed":"38530613","doi":"10.1007/s12539-024-00613-2","pmc":null,"title":"DOTAD: A Database of Therapeutic Antibody Developability","year":2025}],"example":null,"status":null}],"homepage":"https://www.who.int/teams/health-product-and-policy-standards/inn","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"fluticasone","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P2275","wikidata.entity":"Q824258"},"synonyms":["INN_ID"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"can not find a place to resolve to","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a drug","examples":["amfetamine","amfétamine","anfetamina","anfetaminum","phencyclidinum","vemurafenibum","амфетамин","амфетамін","أمفيتامين","苯丙胺"],"homepage":"https://www.who.int/teams/health-product-and-policy-standards/inn/","name":"World Health Organisation international non-proprietary name","prefix":"P2275","xrefs":{"wikidata":"Q824258"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"innatedb":{"prefix":"innatedb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"David Lynn","orcid":"0000-0003-4664-1404","email":"david.lynn@flinders.edu.au","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc01870","pathguide":"264","prefixcommons":"innatedb","re3data":"r3d100010676"},"synonyms":null,"keywords":["immunology"],"domain":null,"references":null,"publications":[{"pubmed":"23180781","doi":"10.1093/nar/gks1147","pmc":"PMC3531080","title":"InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans and mice to microbial infection. The database covers the innate immunity interactome by integrating known interactions and pathways from major public databases.","examples":["20021"],"homepage":"http://www.innatedb.ca/","keywords":["gene","protein","interaction","pathway"],"name":"A Knowledge Resource for Innate Immunity Interactions and Pathways","pattern":"^\\d+$","prefix":"innatedb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/innatedb:$1"}],"uri_format":"http://www.innatedb.ca/getGeneCard.do?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.","homepage":"https://www.innatedb.com/","name":"InnateDB","prefix":"r3d100010676","prefix_synonyms":["A Knowlede Resource for Innate Immunity Interactions & Pathways"],"xrefs":{"doi":"10.17616/R36S43","nif":"0000-20808"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.","homepage":"http://www.innatedb.com/","keywords":["Genome/Gene","Protein","Organism","Health/Disease","Interaction/Pathway"],"name":"InnateDB","prefix":"nbdc01870","publications":[{"pubmed":"23180781"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.rb2drw"}},"pathguide":{"homepage":"http://www.innatedb.ca/","keywords":["PSI-MI"],"name":"A Knowledge Resource for Innate Immunity Interactions and Pathways","prefix":"264","short_names":["InnateDB"]},"tib":null},"ino":{"prefix":"ino","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/INO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000003","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"INO","biolink":"INO","bioportal":"INO","fairsharing":"FAIRsharing.mm72as","obofoundry":"ino","ols":"ino","ontobee":"INO","wikidata.entity":"Q55118418"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"28031747","doi":"10.1186/s13040-016-0118-0","pmc":"PMC5168857","title":"The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature","year":2016},{"pubmed":"25785184","doi":"10.1186/2041-1480-6-2","pmc":"PMC4362819","title":"Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions","year":2015},{"pubmed":"21624163","doi":"10.1186/2041-1480-2-s2-s8","pmc":"PMC3102897","title":"Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ino.owl"}],"contact":{"email":"yongqunh@med.umich.edu","github":"yongqunh","name":"Yongqun Oliver He","orcid":"0000-0001-9189-9661"},"description":"An ontology of interactions and interaction networks","domain":"biological systems","homepage":"https://github.com/INO-ontology/ino","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Interaction Network Ontology","preferred_prefix":"INO","prefix":"ino","publications":[{"doi":"10.1186/2041-1480-6-2","title":"Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions"}],"repository":"https://github.com/INO-ontology/ino","status":"active"},"bioportal":{"contact":{"email":"yongqunh@med.umich.edu","name":"Yongqun \"Oliver\" He"},"description":"The Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.","homepage":"https://github.com/INO-ontology/ino","name":"Interaction Network Ontology","prefix":"INO","publications":[{"pubmed":"25785184"}],"version":"1.1.13"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ino.owl"}],"description":"he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.","homepage":"https://github.com/INO-ontology/ino","name":"INO: Interaction Network Ontology","prefix":"ino","tracker":"https://github.com/INO-ontology/ino/issues","version":"1.1.13"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/INO/32/ino.owl"}],"description":"An ontology of interactions and interaction networks","homepage":"https://github.com/INO-ontology/ino","name":"Interaction Network Ontology","prefix":"INO"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"INO","uri_format":"http://purl.obolibrary.org/obo/INO_$1"},"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Interaction Network Ontology","prefix":"INO"},"cheminf":null,"fairsharing":{"contact":{"email":"yongqunh@med.umich.edu","name":"Yongqun He","orcid":"0000-0001-9189-9661"},"description":"The Interaction Network Ontology (INO) aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It models general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO is aligned with the Basic Formal Ontology (BFO) and imports terms from 10 other existing ontologies, and includes over 500 terms. In terms of interaction-related terms, INO imports and aligns PSI-MI and GO interaction terms and includes over 100 newly generated ontology terms.","homepage":"https://github.com/INO-ontology/ino","keywords":["Life Science","molecular interaction"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Interaction Network Ontology","prefix":"FAIRsharing.mm72as","publications":[{"doi":"10.1186/s13040-016-0118-0","pubmed":"28031747","title":"The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature","url":"http://doi.org/10.1186/s13040-016-0118-0","year":2016},{"doi":"10.1186/2041-1480-6-2","pubmed":"25785184","title":"Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions","url":"http://doi.org/10.1186/2041-1480-6-2","year":2015},{"doi":"10.1186/2041-1480-2-s2-s8","pubmed":"21624163","title":"Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology","url":"http://doi.org/10.1186/2041-1480-2-S2-S8","year":2011}],"short_names":["INO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"insdc":{"prefix":"insdc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"insdc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INSDC","integbio":"nbdc02567","miriam":"insdc","n2t":"insdc","prefixcommons":"insdc","togoid":"Insdc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39535044","doi":"10.1093/nar/gkae1058","pmc":null,"title":"The international nucleotide sequence database collaboration (INSDC): enhancing global participation","year":2024},{"pubmed":"17202161","doi":"10.1093/nar/gkl986","pmc":"PMC1781245","title":"GenBank","year":2007},{"pubmed":"17148479","doi":"10.1093/nar/gkl913","pmc":"PMC1897316","title":"EMBL Nucleotide Sequence Database in 2006","year":2006},{"pubmed":"12436968","doi":"10.1126/science.298.5597.1333b","pmc":null,"title":"Nucleotide sequence database policies","year":2002},{"pubmed":"2326192","doi":"10.1093/nar/18.6.1517","pmc":"PMC330520","title":"Recent changes in the GenBank On-line Service","year":1990}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.","examples":["X58356"],"extras":{"miriam_id":"00000029","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ena/","name":"Nucleotide Sequence Database","pattern":"^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$","prefix":"insdc","providers":[{"code":"ncbi","description":"INSDC through Nucleotide database at NCBI","homepage":"https://www.ncbi.nlm.nih.gov/nuccore/","name":"INSDC through Nucleotide database at NCBI","uri_format":"https://www.ncbi.nlm.nih.gov/nuccore/$1"},{"code":"","description":"INSDC through GenBank","homepage":"https://www.ncbi.nlm.nih.gov/Genbank/","name":"INSDC through GenBank","uri_format":"https://www.ncbi.nlm.nih.gov/nuccore/$1"},{"code":"","description":"INSDC through DDBJ","homepage":"http://www.ddbj.nig.ac.jp/","name":"INSDC through DDBJ","uri_format":"https://getentry.ddbj.nig.ac.jp/getentry?database=ddbj&accession_number=$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/ena/data/view/$1"},"n2t":{"description":"The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.","examples":["X58356"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/nuccore/","name":"INSDC through Nucleotide database at NCBI","pattern":"^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$","prefix":"insdc","uri_format":"https://www.ncbi.nlm.nih.gov/nuccore/$1"},"prefixcommons":{"description":"The International Nucleotide Sequence Databases (INSD) have been developed and maintained collaboratively between DDBJ, EMBL, and GenBank for over 18 years.","examples":["X58356"],"homepage":"http://www.insdc.org/","keywords":["DNA"],"name":"International Nucleotide Sequence Database Collaboration (GenBank, EMBL, DDBJ)","pattern":"^\\w+(\\_)?\\d+(\\.\\d+)?$","prefix":"insdc","prefix_synonyms":["ddbj/embl/genbank","insd"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/insdc:$1"}],"publications":[{"pubmed":"17148479"},{"pubmed":"17202161"},{"pubmed":"2326192"},{"pubmed":"12436968"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INSDC","uri_format":"http://identifiers.org/insdc/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization operates DNA databases in close coordination and cooperation with each other to achieve common accession numbers, and standardize data format (INSD-XML). The databases are called the International Nucleotide Sequence Databases (INSD).","examples":["U10991","AF116914","AK056978","DQ440258","U91725","AY301270","U32907","AY261360","AK001332","U13261"],"keywords":["Gene"],"name":"GenBank/ENA/DDBJ","pattern":"^(?:insdc:)?(?[A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5}|[A-Z]{4,}\\d{9})(?:\\.\\d+)?$","prefix":"Insdc","uri_format":"http://identifiers.org/insdc/$1","xrefs":{"integbio":"nbdc02567"}},"integbio":{"description":"It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization operates DNA databases in close coordination and cooperation with each other to achieve common accession numbers, and standardize data format (INSD-XML). The databases are called the International Nucleotide Sequence Databases (INSD).","homepage":"http://www.insdc.org/","keywords":["Genome/Gene","Sequence","Portal"],"name":"International Nucleotide Sequence Database Collaboration","prefix":"nbdc02567","publications":[{"doi":"10.1126/science.aaf7672","pubmed":""},{"doi":"10.1038/533179a","pubmed":""}],"short_names":["INSDC"],"status":"active"},"pathguide":null,"tib":null},"insdc.cds":{"prefix":"insdc.cds","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"insdc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INSDC.CDS","miriam":"insdc.cds","n2t":"insdc.cds"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":"ncbiprotein","preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The coding sequence or protein identifiers as maintained in INSDC.","examples":["AAA35559"],"extras":{"miriam_id":"00000606","namespaceEmbeddedInLui":false},"homepage":"http://getentry.ddbj.nig.ac.jp","name":"INSDC CDS","pattern":"^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$","prefix":"insdc.cds","providers":[{"code":"","description":"INSDC CDS through ENA","homepage":"https://www.ebi.ac.uk/ena","name":"INSDC CDS through ENA","uri_format":"https://www.ebi.ac.uk/ena/data/view/$1"},{"code":"","description":"INSDC CDS through NCBI","homepage":"https://www.ncbi.nlm.nih.gov/protein/","name":"INSDC CDS through NCBI","uri_format":"https://www.ncbi.nlm.nih.gov/protein/$1"}],"status":"active","uri_format":"http://getentry.ddbj.nig.ac.jp/getentry/dad/$1"},"n2t":{"description":"The coding sequence or protein identifiers as maintained in INSDC.","examples":["AAA35559"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/protein/","name":"INSDC CDS through NCBI","pattern":"^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$","prefix":"insdc.cds","uri_format":"https://www.ncbi.nlm.nih.gov/protein/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INSDC.CDS","uri_format":"http://identifiers.org/insdc.cds/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"insdc.gca":{"prefix":"insdc.gca","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"insdc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INSDC.GCA","miriam":"insdc.gca","n2t":"insdc.gca"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":"ncbi.assembly","preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.","examples":["GCA_000155495.1"],"extras":{"miriam_id":"00000607","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/datasets/genome/","name":"Genome assembly database - INSDC accessions","pattern":"^GCA_[0-9]{9}(\\.[0-9]+)?$","prefix":"insdc.gca","providers":[{"code":"","description":"Genome assembly database through ENA","homepage":"https://www.ebi.ac.uk/ena/browse/genome-assembly-database","name":"Genome assembly database through ENA","uri_format":"https://www.ebi.ac.uk/ena/data/view/$1"}],"status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/datasets/genome/$1"},"n2t":{"description":"The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.","examples":["GCA_000155495.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/assembly/","name":"Genome assembly database NCBI","pattern":"^GCA_[0-9]{9}\\.[0-9]$","prefix":"insdc.gca","uri_format":"https://www.ncbi.nlm.nih.gov/assembly/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INSDC.GCA","uri_format":"http://identifiers.org/insdc.gca/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"insdc.gcf":{"prefix":"insdc.gcf","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"insdc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"refseq.gcf"},"synonyms":["insdc.gcf"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":"ncbi.assembly","preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.","examples":["GCF_000001405"],"extras":{"miriam_id":"00001030","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/","name":"Genome assembly database - RefSeq accessions","pattern":"^GCF_[0-9]{9}(\\.[0-9]+)?$","prefix":"refseq.gcf","status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/datasets/genome/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"insdc.run":{"prefix":"insdc.run","name":"International Nucleotide Sequence Database Collaboration (INSDC) Run","description":"An experimental run, served thrugh the ENA","pattern":"^(E|D|S)RR[0-9]{6,}$","uri_format":"https://www.ebi.ac.uk/ena/browser/view/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.insdc.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ERR436051","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"https://www.insdc.org/ is the authoritative source for INSDC. However, confusingly, they don't mention runs in this table. I think we should ask them to include. ENA is a partner and they have documentation [here](https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html). Runs | (E\\|D\\|S)RR[0-9]{6,} | ERR123456 -- | -- | --","contributor":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":131,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"insdc.sra":{"prefix":"insdc.sra","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Hugh P Shanahan","orcid":"0000-0003-1374-6015","email":"Hugh.Shanahan@rhul.ac.uk","github":"hughshanahan"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"insdc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INSDC.SRA","miriam":"insdc.sra","n2t":"insdc.sra","re3data":"r3d100010775"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25960871","doi":"10.1186/s13742-015-0064-7","pmc":"PMC4425880","title":"Investigation into the annotation of protocol sequencing steps in the sequence read archive","year":2015},{"pubmed":"22009675","doi":"10.1093/nar/gkr854","pmc":"PMC3245110","title":"The Sequence Read Archive: explosive growth of sequencing data","year":2011},{"pubmed":"18045790","doi":"10.1093/nar/gkm1000","pmc":"PMC2238880","title":"Database resources of the National Center for Biotechnology Information","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.","examples":["SRX000007"],"extras":{"miriam_id":"00000243","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/sra","name":"Sequence Read Archive","pattern":"^[SED]R[APRSXZ]\\d+$","prefix":"insdc.sra","providers":[{"code":"ebi","description":"European Nucleotide Archive (ENA)","homepage":"https://www.ebi.ac.uk/ena","name":"European Nucleotide Archive (ENA)","uri_format":"https://www.ebi.ac.uk/ena/data/view/$1"},{"code":"ddbj","description":"DDBJ Sequence Read Archive (DRA)","homepage":"https://www.ddbj.nig.ac.jp/dra/index-e.html","name":"DDBJ Sequence Read Archive (DRA)","uri_format":"https://ddbj.nig.ac.jp/resource/sra-experiment/$1"}],"status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/sra/$1"},"n2t":{"description":"The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.","examples":["SRX000007"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/sra","name":"Sequence Read Archive at NCBI","pattern":"^[SED]R[APRSXZ]\\d+$","prefix":"insdc.sra","uri_format":"https://www.ncbi.nlm.nih.gov/sra/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INSDC.SRA","uri_format":"http://identifiers.org/insdc.sra/$1"},"edam":null,"re3data":{"description":"The Sequence Read Archive stores the raw sequencing data from such sequencing platforms as the Roche 454 GS System, the Illumina Genome Analyzer, the Applied Biosystems SOLiD System, the Helicos Heliscope, and the Complete Genomics. It archives the sequencing data associated with RNA-Seq, ChIP-Seq, Genomic and Transcriptomic assemblies, and 16S ribosomal RNA data.","homepage":"https://www.ncbi.nlm.nih.gov/sra","license":{"name":"Copyrights"},"name":"Sequence Read Archive","prefix":"r3d100010775","prefix_synonyms":["SRA"],"xrefs":{"doi":"10.17616/R31S69","omics":"01031"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"inspire.theme":{"prefix":"inspire.theme","name":"INSPIRE theme register","description":"The INSPIRE theme register contains all spatial data themes, as defined in the Annexes of the INSPIRE Directive ( Directive 2007/2/EC of the European Parliament and of the Council of 14 March 2007 establishing an Infrastructure for Spatial Information in the European Community (INSPIRE)). The descriptions of the themes are based on version 3.0 of the \"Definition of Annex Themes and Scope (D 2.3)\" by the data specifications drafting team and subsequent updates by the INSPIRE Thematic Working Groups (TWGs). (from homepage)","pattern":null,"uri_format":"https://inspire.ec.europa.eu/theme/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://inspire.ec.europa.eu/theme","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"mr","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://inspire.ec.europa.eu/theme/theme.en.rdf","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"intact":{"prefix":"intact","name":"IntAct protein interaction","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Kalpana Panneerselvam","orcid":"0000-0003-2534-198X","email":"kalpanap@ebi.ac.uk","github":"Kalpanapanneerselvam"},"contact_extras":[{"name":"Juan Jose Medina Reyes","orcid":"0009-0004-6468-260X","email":"jmedina@ebi.ac.uk","github":"jmedinaebi"}],"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02catss52","wikidata":null,"name":"European Bioinformatics Institute","partnered":false}],"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":"intact","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INTACT","go":"IntAct","integbio":"nbdc00507","miriam":"intact","n2t":"intact","pathguide":"111","prefixcommons":"intact","re3data":"r3d100010671","togoid":"Intact","uniprot":"DB-0051"},"synonyms":null,"keywords":null,"domain":"relationship","references":null,"publications":[{"pubmed":"39401100","doi":"10.1002/cpz1.70018","pmc":null,"title":"IntAct Database for Accessing IMEx's Contextual Metadata of Molecular Interactions","year":2024},{"pubmed":"24234451","doi":"10.1093/nar/gkt1115","pmc":"PMC3965093","title":"The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases","year":2013},{"pubmed":"21716279","doi":"10.1038/nmeth.1637","pmc":"PMC3246345","title":"PSICQUIC and PSISCORE: accessing and scoring molecular interactions","year":2011},{"pubmed":"19850723","doi":"10.1093/nar/gkp878","pmc":"PMC2808934","title":"The IntAct molecular interaction database in 2010","year":2009},{"pubmed":"17925023","doi":"10.1186/1741-7007-5-44","pmc":"PMC2189715","title":"Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions","year":2007},{"pubmed":"14681455","doi":"10.1093/nar/gkh052","pmc":"PMC308786","title":"IntAct: an open source molecular interaction database","year":2004},{"pubmed":"19850723","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22121220","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681455","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24234451","doi":"10.1093/nar/gkt1115","pmc":null,"title":null,"year":null},{"pubmed":"19850723","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22121220","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681455","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24234451","doi":"10.1093/nar/gkt1115","pmc":null,"title":null,"year":null},{"pubmed":"19850723","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22121220","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681455","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24234451","doi":"10.1093/nar/gkt1115","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Sucharitha Balu","orcid":"0000-0001-7456-0594","email":"sbalu@ebi.ac.uk","github":"CP-SB"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://raw.githubusercontent.com/intact-portal/intact-portal-documentation/master/assets/logo_gradient_250x82_transparentbg_300dpi.png","miriam":{"description":"IntAct provides a freely available, open source database system and analysis tools for protein interaction data.","examples":["EBI-2307691"],"extras":{"miriam_id":"00000010","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"IntAct","pattern":"^EBI\\-[0-9]+$","prefix":"intact","status":"active","uri_format":"https://www.ebi.ac.uk/intact/interaction/$1"},"n2t":{"description":"IntAct provides a freely available, open source database system and analysis tools for protein interaction data.","examples":["EBI-2307691"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"IntAct at EBI","pattern":"^EBI\\-[0-9]+$","prefix":"intact","uri_format":"https://www.ebi.ac.uk/intact/interaction/$1"},"prefixcommons":{"description":"IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.","examples":["EBI-2307691"],"homepage":"http://www.ebi.ac.uk/intact","keywords":["protein","interaction"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"The IntAct molecular interaction database","pattern":"^EBI\\-\\d+$","prefix":"intact","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/intact:$1"}],"publications":[{"pubmed":"14681455"}],"uri_format":"http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.ebi.ac.uk/intact/","name":"IntAct protein interaction database","prefix":"IntAct"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.ebi.ac.uk/intact/","keywords":["Protein-protein interaction databases"],"name":"Protein interaction database and analysis system","prefix":"DB-0051","publications":[{"doi":"10.1093/nar/gkt1115","pubmed":"24234451"}],"short_names":["IntAct"],"uri_format":"https://www.ebi.ac.uk/intact/interactors/id:$1*"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INTACT","uri_format":"http://identifiers.org/intact/$1"},"edam":null,"re3data":{"description":"IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.","homepage":"https://www.ebi.ac.uk/intact/home","license":{"name":"Apache License 2.0"},"name":"IntAct","prefix":"r3d100010671","prefix_synonyms":["IntAct Molecular Interaction Database"],"xrefs":{"doi":"10.17616/R3QS4R","nif":"0000-03026","omics":"01918"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"IntAct is a database of molecular interactions. The database contains information on more than 400,000 interactions gathered from primary literature. Users can search by gene, protein, or publication, among others, and the database includes manually annotated data from several other interaction databases. Software and bulk data, updoated weekly, are also available for download.","examples":["EBI-7947422","EBI-15714708","EBI-16225271","EBI-4406290","EBI-9026465","EBI-6403471","EBI-1113651","EBI-562824","EBI-9014072","EBI-1784742"],"keywords":["Interaction"],"name":"IntAct","pattern":"^(?EBI\\-[0-9]+)$","prefix":"Intact","uri_format":"http://identifiers.org/intact/$1","xrefs":{"integbio":"nbdc00507"}},"integbio":{"description":"IntAct is a database of molecular interactions. The database contains information on more than 400,000 interactions gathered from primary literature. Users can search by gene, protein, or publication, among others, and the database includes manually annotated data from several other interaction databases. Software and bulk data, updoated weekly, are also available for download.","homepage":"http://www.ebi.ac.uk/intact/main.xhtml","keywords":["Protein","Metabolite","Interaction/Pathway","Repository"],"name":"IntAct","prefix":"nbdc00507","publications":[{"pubmed":"19850723"},{"pubmed":"22121220"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000054"}},"pathguide":{"homepage":"http://www.ebi.ac.uk/intact","keywords":["PSI-MI"],"name":"IntAct Molecular Interaction Database","prefix":"111","short_names":["IntAct"]},"tib":null},"intact.molecule":{"prefix":"intact.molecule","name":null,"description":null,"pattern":null,"uri_format":"https://www.ebi.ac.uk/intact/search?query=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"intact","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"INTACT.MOLECULE","miriam":"intact.molecule","n2t":"intact.molecule"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39401100","doi":"10.1002/cpz1.70018","pmc":null,"title":"IntAct Database for Accessing IMEx's Contextual Metadata of Molecular Interactions","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.","examples":["EBI-366083"],"extras":{"miriam_id":"00000427","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"IntAct Molecule","pattern":"^EBI\\-[0-9]+$","prefix":"intact.molecule","status":"active","uri_format":"https://www.ebi.ac.uk/intact/molecule/$1"},"n2t":{"description":"IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.","examples":["EBI-366083"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"IntAct Molecule at EBI","pattern":"^EBI\\-[0-9]+$","prefix":"intact.molecule","uri_format":"https://www.ebi.ac.uk/intact/molecule/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"INTACT.MOLECULE","uri_format":"http://identifiers.org/intact.molecule/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"integbio":{"prefix":"integbio","name":"Integbio","description":"Integbio Database Catalog provides whereabouts information (URL), database description, biological species and other attributes (metadata) of Japanese and international life science databases to make it easier for users to find databases they need. This catalog has been developed as a part of the integration of life science databases promoted by four ministries in Japan: the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor, and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF), and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)","pattern":"^nbdc\\d+$","uri_format":"https://catalog.integbio.jp/dbcatalog/en/record/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://integbio.jp/en/","repository":null,"contact":{"name":"Shuichi Kawashima","orcid":"0000-0001-7883-3756","email":"kwsm@dbcls.rois.ac.jp","github":"skwsm"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"nbdc01071","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://integbio.jp/templates/integbio/images/logo/logo.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"interfil":{"prefix":"interfil","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"interfil"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants.","examples":["NM_006262"],"homepage":"http://www.interfil.org","keywords":["genome"],"name":"Human Intermediate Filament Database","pattern":"^N[A-Z]_\\d+$","prefix":"interfil","prefix_synonyms":["intermediate_filament_db"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/interfil:$1"}],"uri_format":"http://www.interfil.org/details.php?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"interlex":{"prefix":"interlex","name":"InterLex","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Maryann Elizabeth Martone","orcid":"0000-0002-8406-3871","email":"mmartone@ucsd.edu","github":"memartone"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.67sssf","miriam":"ilx","wikidata":"P696"},"synonyms":["ILX"],"keywords":null,"domain":null,"references":["https://github.com/AllenInstitute/nomenclature"],"publications":[{"pubmed":"24009581","doi":"10.3389/fninf.2013.00018","pmc":"PMC3757470","title":"NeuroLex.org: an online framework for neuroscience knowledge","year":2013},{"pubmed":"24009581","doi":"10.3389/fninf.2013.00018","pmc":null,"title":"NeuroLex.org: an online framework for neuroscience knowledge","year":2013}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. ","examples":["0101963"],"extras":{"miriam_id":"00000814","namespaceEmbeddedInLui":false},"homepage":"https://www.fdilab.org","name":"InterLex","pattern":"^[0-9]+$","prefix":"ilx","status":"active","uri_format":"https://scicrunch.org/scicrunch/interlex/view/ilx_$1"},"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier in the Interlex database (used to be Neurolex)","examples":["nlx_anat_090801","sao1103104164"],"homepage":"http://interlex.org","name":"Interlex ID","pattern":"^[0-9A-Za-z_]+$","prefix":"P696"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The InterLex terminology is a lexicon of biomedical terms built on the foundation of NeuroLex and contains all of the existing NeuroLex terms. The initial entries in NeuroLex were built from the NIFSTD ontologies and BIRNLex (Biomedical Informatics Research Network Project Lexicon). Final content review from NeuroLex is still ongoing.","homepage":"https://scicrunch.org/scicrunch/interlex/dashboard","keywords":["Anatomy","Neurobiology","Biomedical Science","Imaging","brain"],"license":{"url":"https://scicrunch.org/page/terms"},"name":"InterLex","prefix":"FAIRsharing.67sssf","publications":[{"doi":"10.3389/fninf.2013.00018","pubmed":"24009581","title":"NeuroLex.org: an online framework for neuroscience knowledge","url":"http://doi.org/10.3389/fninf.2013.00018","year":2013}],"short_names":["InterLex"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"interpro":{"prefix":"interpro","name":"InterPro","description":null,"pattern":null,"uri_format":"https://www.ebi.ac.uk/interpro/entry/InterPro/$1","uri_format_resolvable":null,"rdf_uri_format":"http://purl.obolibrary.org/obo/IPR_$1","providers":null,"homepage":null,"repository":null,"contact":{"name":"Alex Bateman","orcid":"0000-0002-6982-4660","email":"agb@ebi.ac.uk","github":"bateman-research"},"contact_extras":null,"contact_group_email":"interhelp@ebi.ac.uk","contact_page":null,"owners":null,"example":"IPR016380","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/interpro/interpro.owl","download_obo":"https://w3id.org/biopragmatics/resources/interpro/interpro.obo","download_json":"https://w3id.org/biopragmatics/resources/interpro/interpro.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":false,"mappings":{"biocontext":"IPR","biolink":"interpro","edam":"1133","go":"InterPro","integbio":"nbdc00108","miriam":"interpro","n2t":"interpro","ncbi":"InterPro","obofoundry":"ipr","prefixcommons":"interpro","re3data":"r3d100010798","togoid":"Interpro","uniprot":"DB-0052","wikidata":"P2926","wikidata.entity":"Q114677890"},"synonyms":["IP","IPR","InterPro"],"keywords":null,"domain":"protein family","references":null,"publications":[{"pubmed":"39565202","doi":"10.1093/nar/gkae1082","pmc":null,"title":"InterPro: the protein sequence classification resource in 2025","year":2024},{"pubmed":"36350672","doi":"10.1093/nar/gkac993","pmc":"PMC9825450","title":"InterPro in 2022","year":2023},{"pubmed":"33156333","doi":"10.1093/nar/gkaa977","pmc":"PMC7778928","title":"The InterPro protein families and domains database: 20 years on","year":2021},{"pubmed":"30398656","doi":"10.1093/nar/gky1100","pmc":"PMC6323941","title":"InterPro in 2019: improving coverage, classification and access to protein sequence annotations","year":2019},{"pubmed":"15608177","doi":"10.1093/nar/gki106","pmc":"PMC540060","title":"InterPro, progress and status in 2005","year":2005},{"pubmed":"22096229","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22301074","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15980438","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21785143","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18836194","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608177","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36350672","doi":"10.1093/nar/gkac993","pmc":null,"title":null,"year":null},{"pubmed":"22096229","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22301074","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15980438","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21785143","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18836194","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608177","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36350672","doi":"10.1093/nar/gkac993","pmc":null,"title":null,"year":null},{"pubmed":"22096229","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22301074","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15980438","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21785143","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18836194","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608177","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36350672","doi":"10.1093/nar/gkac993","pmc":null,"title":null,"year":null},{"pubmed":"22096229","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22301074","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15980438","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21785143","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18836194","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608177","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36350672","doi":"10.1093/nar/gkac993","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"interpro","mastodon":null,"github_request_issue":null,"logo":"https://content.embl.org/sites/default/files/03-2025/interpro_newlogo-2-scaled-1.jpg","miriam":{"description":"InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.","examples":["IPR000100"],"extras":{"miriam_id":"00000011","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/interpro/","name":"InterPro","pattern":"^IPR\\d{6}$","prefix":"interpro","providers":[{"code":"","description":"Bio2RDF","homepage":"http://bio2rdf.org/","name":"Bio2RDF","uri_format":"http://bio2rdf.org/interpro:$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/interpro/entry/$1"},"n2t":{"description":"InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.","examples":["IPR000100"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/interpro/","name":"InterPro","pattern":"^IPR\\d{6}$","prefix":"interpro","uri_format":"https://www.ebi.ac.uk/interpro/entry/$1"},"prefixcommons":{"description":"InterPro is an integrated database of predictive protein \"signatures\" used for the classification and automatic annotation of proteins and genomes. InterPro classifies sequences at superfamily, family and subfamily levels, predicting the occurrence of functional domains, repeats and important sites.","examples":["IPR000100"],"homepage":"http://www.ebi.ac.uk/interpro","keywords":["domain","protein"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"Integrated resource of protein families, domains and functional sites","pattern":"^IPR\\d{6}$","prefix":"interpro","prefix_synonyms":["ipr"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/interpro:$1"}],"publications":[{"pubmed":"15608177"}],"uri_format":"http://www.ebi.ac.uk/interpro/IEntry?ac=$1"},"wikidata":{"description":"InterPro unique identifier","examples":["IPR000455","IPR001807","IPR039030"],"homepage":"https://www.ebi.ac.uk/interpro/","name":"InterPro ID","pattern":"^IPR\\d{6}$","prefix":"P2926","uri_format":"http://www.ebi.ac.uk/interpro/entry/$1"},"wikidata_entity":null,"go":{"homepage":"http://www.ebi.ac.uk/interpro/","name":"InterPro database of protein domains and motifs","prefix":"InterPro","prefix_synonyms":["INTERPRO","IPR"],"uri_format":"http://www.ebi.ac.uk/interpro/entry/$1"},"obofoundry":{"contact":{"email":"interhelp@ebi.ac.uk","name":"InterPro Help"},"domain":"chemistry and biochemistry","homepage":"http://www.ebi.ac.uk/interpro/index.html","name":"Protein Domains","preferred_prefix":"IPR","prefix":"ipr","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["IPR002928"],"homepage":"http://www.ebi.ac.uk/interpro/","name":"InterPro protein sequence database","prefix":"InterPro"},"uniprot":{"homepage":"https://www.ebi.ac.uk/interpro/","keywords":["Family and domain databases"],"name":"Integrated resource of protein families, domains and functional sites","prefix":"DB-0052","publications":[{"doi":"10.1093/nar/gkac993","pubmed":"36350672"}],"short_names":["InterPro"],"uri_format":"https://www.ebi.ac.uk/interpro/entry/$1"},"biolink":{"prefix":"interpro","uri_format":"https://www.ebi.ac.uk/interpro/entry/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IPR","uri_format":"http://purl.obolibrary.org/obo/IPR_$1"},"edam":{"description":"Every InterPro entry has a unique accession number to provide a persistent citation of database records.","name":"InterPro","prefix":"1133"},"re3data":{"description":"InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.","homepage":"https://www.ebi.ac.uk/interpro/","license":{"name":"Public Domain"},"name":"InterPro","prefix":"r3d100010798","prefix_synonyms":["protein sequence analysis & classification"],"xrefs":{"doi":"10.17616/R3FS61","nif":"0000-03035","omics":"01694"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"InterPro is a database that analyses proteins functionally and classifies them into families as well as predicts their domain and sites in the genome. This repository harvests its content from a large number of related databases and consolidates its findings into a single searchable resource avoiding the occurrence of redundant entries. InterPro aims to update their content every 8 weeks. A keyword search is available and an option is provided where a protein sequence can be entered for analysis.","examples":["IPR038152","IPR040448","IPR036748","IPR034266","IPR005479","IPR036365","IPR000174","IPR001334","IPR000731","IPR001767"],"keywords":["Domain"],"name":"InterPro","pattern":"^(?IPR\\d{6})$","prefix":"Interpro","uri_format":"http://identifiers.org/interpro/$1","xrefs":{"integbio":"nbdc00108"}},"integbio":{"description":"InterPro is a database that analyses proteins functionally and classifies them into families as well as predicts their domain and sites in the genome.\nThis repository harvests its content from a large number of related databases and consolidates its findings into a single searchable resource avoiding the occurrence of redundant entries.\nInterPro aims to update their content every 8 weeks.\nA keyword search is available and an option is provided where a protein sequence can be entered for analysis.","homepage":"http://www.ebi.ac.uk/interpro/","keywords":["Protein","Sequence","Classification"],"name":"Integrated documentation resource for protein families, domains and functional sites","prefix":"nbdc00108","publications":[{"pubmed":"22096229"},{"pubmed":"22301074"},{"pubmed":"15980438"},{"pubmed":"21785143"},{"pubmed":"18836194"}],"short_names":["InterPro"],"status":"active","xrefs":{"fairsharing":"biodbcore-000315"}},"pathguide":null,"tib":null},"iobc":{"prefix":"iobc","name":null,"description":null,"pattern":null,"uri_format":"http://purl.jp/bio/4/id/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/kushidat/IOBC","repository":"https://github.com/kushidat/IOBC","contact":{"name":"Tatsuya Kushida","orcid":"0000-0002-0784-4113","email":"kushida@biosciencedbc.jp","github":"kushidatatsuya"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"200906038218908385","example_extras":["AC21_cat","AC21","OWLClass_00000000000000000321"],"example_decoys":null,"license":"CC-BY-NC-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"IOBC","bioportal":"IOBC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.1007/s00354-019-00074-y","pmc":null,"title":"Interconnection of Biological Knowledge Using NikkajiRDF and Interlinking Ontology for Biological Concepts","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"kushida@biosciencedbc.jp","name":"Tatsuya Kushida"},"description":"Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\".","homepage":"https://github.com/kushidat/IOBC","name":"Interlinking Ontology for Biological Concepts","prefix":"IOBC","publications":[{"url":"http://purl.jp/bio/4/publications/iobc"}],"version":"version 1.6.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/IOBC/25/iobc.owl"}],"description":"Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\".","homepage":"https://github.com/kushidat/IOBC","name":"Interlinking Ontology for Biological Concepts","prefix":"IOBC","version":"version 1.6.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iofcore":{"prefix":"iofcore","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/iofoundry/ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"hasSpecifiedOutput","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/iofoundry/ontology/raw/refs/heads/master/core/Core.rdf","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"iofcore"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The IOF Core Ontology contains notions found to be common across multiple manufacturing domains. This file is an RDF implementation of these notions. The ontology utilizes the Basic Formal Ontology or BFO as a top-level ontology but also borrows terms from various domain-independent or mid-level ontologies. The purpose of the ontology is to serve as a foundation for ensuring consistency and interoperability across various domain-specific reference ontologies the IOF publishes.","extras":{"version.iri":"https://spec.industrialontologies.org/ontology/202601/core/Core/"},"homepage":"https://oagi.org/pages/Released-Ontologies","keywords":["NFDI4ING","engineering"],"name":"Industrial Ontology Foundry (IOF) Core Ontology","prefix":"iofcore","tracker":"https://github.com/iofoundry/ontology/issues","uri_format":"https://spec.industrialontologies.org/ontology/$1"}},"ioio":{"prefix":"ioio","name":"Individual Organism Information Ontology","description":"An ontology of information entities about an individual","pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/IOIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://openlhs.github.io/IOIO/","repository":"https://github.com/OpenLHS/IOIO","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/OpenLHS/IOIO/raw/refs/heads/main/IOIO.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ipi":{"prefix":"ipi","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"biocontext":"IPI","integbio":"nbdc00911","prefixcommons":"ipi"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"15221759","doi":"10.1002/pmic.200300721","pmc":null,"title":"The International Protein Index: an integrated database for proteomics experiments","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers.","examples":["IPI00000001"],"homepage":"http://www.ebi.ac.uk/IPI","keywords":["protein"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"International Protein Index","pattern":"^IPI\\d{8}$","prefix":"ipi","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ipi:$1"}],"publications":[{"pubmed":"15221759"}],"uri_format":"http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IPI","uri_format":"http://identifiers.org/ipi/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"homepage":"http://www.ebi.ac.uk/IPI/","keywords":["Protein","Sequence"],"name":"International Protein Index","prefix":"nbdc00911","publications":[{"pubmed":"15221759"}],"short_names":["IPI"]},"pathguide":null,"tib":null},"ipni.author":{"prefix":"ipni.author","name":"International Plant Names Index author","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ipni.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P586"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"numerical identifier for a person in the International Plant Names Index","examples":["12653-1","2001-1"],"name":"IPNI author ID","pattern":"^[1-9][0-9]{0,7}-[0-9]$","prefix":"P586","short_names":["IPNI"],"uri_format":"https://www.ipni.org/a/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ipni.plant":{"prefix":"ipni.plant","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P961"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"numerical identifier for a plant name in the International Plant Names Index","examples":["298593-1","323572-2"],"homepage":"https://www.ipni.org/","name":"IPNI plant ID","pattern":"^[1-9]\\d{0,7}-[123]$","prefix":"P961","uri_format":"https://www.ipni.org/n/$1","uri_format_rdf":"http://ipni.org/urn:lsid:ipni.org:names:$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ipni.publication":{"prefix":"ipni.publication","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P2008"},"synonyms":null,"keywords":null,"domain":"publication","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a publication in the International Plant Names Index","examples":["15997-2","17381-2","9105-2"],"homepage":"https://www.ipni.org/","name":"IPNI publication ID","pattern":"^[1-9]\\d{0,7}\\-\\d$","prefix":"P2008","uri_format":"https://www.ipni.org/p/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"irct":{"prefix":"irct","name":"Iranian Registry of Clinical Trials","description":"Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space.","pattern":"^IRCT\\d+N\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://en.irct.ir/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IRCT20080904001199N7","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://en.irct.ir/trial/65035"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ird.segment":{"prefix":"ird.segment","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Richard H. Scheuermann","orcid":"0000-0003-1355-892X","email":"richard.scheuermann@nih.gov","github":"scheuerm"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IRD.SEGMENT","miriam":"ird.segment","n2t":"ird.segment","prefixcommons":"ird.segment"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17965094","doi":"10.1093/nar/gkm905","pmc":"PMC2238987","title":"BioHealthBase: informatics support in the elucidation of influenza virus host pathogen interactions and virulence","year":2007},{"pubmed":"17965094","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).","examples":["CY077097"],"extras":{"miriam_id":"00000172","namespaceEmbeddedInLui":false},"homepage":"http://www.fludb.org/","name":"IRD Segment Sequence","pattern":"^\\w+(\\_)?\\d+(\\.\\d+)?$","prefix":"ird.segment","status":"active","uri_format":"http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"},"n2t":{"description":"Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).","examples":["CY077097"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.fludb.org/","name":"IRD at BioHealthBase","pattern":"^\\w+(\\_)?\\d+(\\.\\d+)?$","prefix":"ird.segment","uri_format":"http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"},"prefixcommons":{"description":"Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).","examples":["CY077097"],"keywords":["gene","protein"],"name":"IRD Segment Sequence","pattern":"^\\w+(\\_)?\\d+(\\.\\d+)?$","prefix":"ird.segment","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ird.segment:$1"}],"publications":[{"pubmed":"17965094"}],"uri_format":"http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IRD.SEGMENT","uri_format":"http://identifiers.org/ird.segment/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"irefweb":{"prefix":"irefweb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Shoshana J. Wodak","orcid":"0000-0002-0701-6545","email":"shoshana@sickkids.ca","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IREFWEB","miriam":"irefweb","n2t":"irefweb","pathguide":"300","prefixcommons":"irefweb","re3data":"r3d100012725"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20940177","doi":"10.1093/database/baq023","pmc":"PMC2963317","title":"iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.","examples":["617102"],"extras":{"miriam_id":"00000123","namespaceEmbeddedInLui":false},"homepage":"http://wodaklab.org/iRefWeb/","name":"iRefWeb","pattern":"^\\d+$","prefix":"irefweb","status":"deprecated","uri_format":"http://wodaklab.org/iRefWeb/interaction/show/$1"},"n2t":{"description":"iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.","examples":["617102"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://wodaklab.org/iRefWeb/","name":"iRefWeb Protein Interaction Reference Index","pattern":"^\\d+$","prefix":"irefweb","uri_format":"http://wodaklab.org/iRefWeb/interaction/show/$1"},"prefixcommons":{"description":"iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID.","examples":["617102"],"homepage":"http://wodaklab.org/iRefWeb/","keywords":["interaction","protein"],"name":"Interaction Reference Index Web Interface","pattern":"^\\d+$","prefix":"irefweb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/irefweb:$1"}],"uri_format":"http://wodaklab.org/iRefWeb/interaction/show/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IREFWEB","uri_format":"http://identifiers.org/irefweb/$1"},"edam":null,"re3data":{"description":"iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID.","homepage":"https://wodaklab.org/iRefWeb/","name":"iRefWeb","prefix":"r3d100012725","prefix_synonyms":["Interaction Reference Index Web Interface"],"xrefs":{"doi":"10.17616/R31B8K","nif":"0000-20861","omics":"02922"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://wodaklab.org/iRefWeb/","keywords":["PSI-MI"],"name":"Interaction Reference Index Web Interface","prefix":"300","short_names":["iRefWeb"]},"tib":null},"iresite":{"prefix":"iresite","name":"Database of experimentally verified IRES structures","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Martin Pospíšek","orcid":"0000-0002-9490-8911","email":"martin.pospisek@natur.cuni.cz","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc01752","prefixcommons":"iresite"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19917642","doi":"10.1093/nar/gkp981","pmc":"PMC2808886","title":"IRESite--a tool for the examination of viral and cellular internal ribosome entry sites","year":2009},{"pubmed":"16381829","doi":"10.1093/nar/gkj081","pmc":"PMC1347444","title":"IRESite: the database of experimentally verified IRES structures (www.iresite.org)","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The IRESite database presents information about the experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.","examples":["322"],"homepage":"http://www.iresite.org","keywords":["RNA","regulation"],"name":"IRESite: The database of experimentally verified IRES structures","pattern":"^\\d+$","prefix":"iresite","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/iresite:$1"}],"uri_format":"http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.","homepage":"http://www.iresite.org","keywords":["DNA","Protein","RNA","Sequence","Interaction/Pathway"],"name":"IRESite","prefix":"nbdc01752","publications":[{"pubmed":"16381829"},{"pubmed":"19917642"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.kd39j4"}},"pathguide":null,"tib":null},"iro":{"prefix":"iro","name":"Insect Resistance Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000008","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isbn":{"prefix":"isbn","name":null,"description":null,"pattern":null,"uri_format":"https://www.worldcat.org/isbn/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"google.isbn","name":"Google Books","description":"Google Books provider for ISBN numbers","homepage":"https://books.google.com","uri_format":"https://books.google.com/books?isbn=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"isbnsearch","name":"ISBN Search","description":"ISBN Search is an unofficial search engine for ISBNs.","homepage":"https://isbnsearch.org","uri_format":"https://isbnsearch.org/isbn/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"9789211613865","example_extras":["978-92-1-161386-5"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ISBN-13","biolink":"isbn","edam":"2634","go":"ISBN","miriam":"isbn","n2t":"isbn","prefixcommons":"isbn"},"synonyms":["ISBN-10","ISBN-13"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The International Standard Book Number (ISBN) is for identifying printed books.","examples":["9781584885658"],"extras":{"miriam_id":"00000064","namespaceEmbeddedInLui":false},"homepage":"http://www.worldcat.org/","name":"ISBN","pattern":"^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$","prefix":"isbn","providers":[{"code":"","description":"ISBNDB - ISBN Database","homepage":"http://isbndb.com/","name":"ISBNDB - ISBN Database","uri_format":"http://isbndb.com/search-all.html?kw=$1"}],"status":"active","uri_format":"http://www.worldcat.org/isbn/$1"},"n2t":{"description":"The International Standard Book Number (ISBN) is for identifying printed books.","examples":["9781584885658"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://isbndb.com/","name":"ISBNDB - ISBN Database","pattern":"^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$","prefix":"isbn","uri_format":"http://isbndb.com/search-all.html?kw=$1"},"prefixcommons":{"description":"The International Standard Book Number (ISBN) is for identifying printed books.","examples":["9781584885658"],"homepage":"http://isbndb.com/","keywords":["bibliography"],"name":"International Standard Book Number","pattern":"^\\d+$","prefix":"isbn","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/isbn:$1"}],"uri_format":"http://isbndb.com/search-all.html?kw=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.worldcat.org","name":"International Standard Book Number","prefix":"ISBN","uri_format":"https://www.worldcat.org/search?q=bn%3A$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"isbn","uri_format":"https://www.isbn-international.org/identifier/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ISBN-13","uri_format":"https://monarchinitiative.org/ISBN13_$1"},"edam":{"description":"The International Standard Book Number (ISBN) is for identifying printed books.","name":"ISBN","prefix":"2634"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isced1997":{"prefix":"isced1997","name":"International Standard Classification of Education, 1997 Edition","description":"ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.","pattern":null,"uri_format":"https://w3id.org/kim/isced-1997/level$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":{"url":"https://github.com/dini-ag-kim/vocabs-edu/raw/refs/heads/master/isced-1997.ttl","rdf_format":"ttl"},"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["education level","open educational resources"],"domain":null,"references":["https://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-1997-en_0.pdf"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1625,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isced2011":{"prefix":"isced2011","name":"International Standard Classification of Education, 2011 Edition","description":"ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.","pattern":null,"uri_format":"https://w3id.org/kim/isced-2011/level$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":{"url":"https://github.com/dini-ag-kim/vocabs-edu/raw/refs/heads/master/isced-2011.ttl","rdf_format":"ttl"},"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["education level","open educational resources"],"domain":null,"references":["https://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1625,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isced2013":{"prefix":"isced2013","name":"International Standard Classification of Education, 2013 Edition","description":"ISCED is designed to serve as a framework to classify educational activities as defined in programmes and the resulting qualifications into internationally agreed categories. The basic concepts and definitions of ISCED are therefore intended to be internationally valid and comprehensive of the full range of education systems.","pattern":null,"uri_format":"https://w3id.org/kim/isced-2013/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ec.europa.eu/eurostat/statistics-explained/index.php?title=International_Standard_Classification_of_Education_(ISCED)","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"n0021","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/vocabs-edu/raw/refs/heads/master/isced-2013.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"isced"},"synonyms":null,"keywords":["education level","open educational resources"],"domain":null,"references":["http://www.uis.unesco.org/Education/Documents/isced-fields-of-education-training-2013.pdf"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1625,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The International Standard Classification of Education (ISCED) is a framework for assembling, compiling and analysing cross-nationally comparable statistics on education. ISCED Fields of Education and Training classifies education programmes and related qualifications by fields of study: A field is the `broad domain, branch or area of content covered by an education programme or qualification'. The International Standard Classification of Education is maintained by DG EMPL and published by the Publications Office of the European Union on the EU Vocabularies website.","homepage":"https://op.europa.eu/de/home","keywords":["Educational Resources"],"name":"International Standard Classification of Education: Fields of Education and Training 2013","prefix":"isced","uri_format":"http://data.europa.eu/snb/isced-f/$1"}},"ised":{"prefix":"ised","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"ised"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea.","examples":["AY209920"],"homepage":"http://influenza.korea.ac.kr","keywords":["protein"],"name":"Influenza Sequence and Epitope Database","pattern":"^[A-Z]+\\d+$","prefix":"ised","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ised:$1"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isfinder":{"prefix":"isfinder","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Patricia Siguier","orcid":"0000-0003-1620-6495","email":"patricia.siguier@univ-tlse3.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ISFINDER","integbio":"nbdc00510","miriam":"isfinder","n2t":"isfinder","ncbi":"ISFinder","prefixcommons":"isfinder"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16381877","doi":"10.1093/nar/gkj014","pmc":"PMC1347377","title":"ISfinder: the reference centre for bacterial insertion sequences","year":2006},{"pubmed":"16381877","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16381877","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.","examples":["ISA1083-2"],"extras":{"miriam_id":"00000173","namespaceEmbeddedInLui":false},"homepage":"http://www-is.biotoul.fr/i","name":"ISFinder","pattern":"^IS\\w+(\\-\\d)?$","prefix":"isfinder","status":"deprecated","uri_format":"https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"},"n2t":{"description":"ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.","examples":["ISA1083-2"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www-is.biotoul.fr/i","name":"IS Finder at CNRS","pattern":"^IS\\w+(\\-\\d)?$","prefix":"isfinder","uri_format":"https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"},"prefixcommons":{"description":"ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.","examples":["ISA1083-2"],"homepage":"http://www-is.biotoul.fr","keywords":["gene","sequence"],"name":"IS Finder","pattern":"^IS\\w+(\\-\\d)?$","prefix":"isfinder","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/isfinder:$1"}],"publications":[{"pubmed":"16381877"}],"uri_format":"http://www-is.biotoul.fr/index.html?is_special_name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["ISA1083-2"],"homepage":"http://www-is.biotoul.fr/","name":"Insertion sequence elements database","prefix":"ISFinder"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ISFINDER","uri_format":"http://identifiers.org/isfinder/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"IS FINDER is a database of bacterial and archaeal insertion sequences. The database contains sequence and position information on insertion elements. Links to external databases are provided for each entry.","homepage":"http://www-is.biotoul.fr/","keywords":["DNA","Sequence","Taxonomy"],"name":"IS FINDER","prefix":"nbdc00510","publications":[{"pubmed":"16381877"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000296"}},"pathguide":null,"tib":null},"isni":{"prefix":"isni","name":"International Standard Name Identifier","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"isni.short","name":"ISNI short","description":"Unqualified ISNI URI","homepage":"http://www.isni.org","uri_format":"http://www.isni.org/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20464","biolink":"isni","miriam":"isni","n2t":"isni","wikidata":"P213","wikidata.entity":"Q423048"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.","examples":["000000012281955X"],"extras":{"miriam_id":"00000684","namespaceEmbeddedInLui":false},"homepage":"http://www.isni.org","name":"International Standard Name Identifier","pattern":"^[0-9]{15}[0-9X]{1}$","prefix":"isni","status":"active","uri_format":"http://www.isni.org/isni/$1"},"n2t":{"description":"ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC. The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.","examples":["000000012281955X"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.isni.org","name":"International Standard Name Identifier","pattern":"^[0-9]{15}[0-9X]{1}$","prefix":"isni","uri_format":"http://www.isni.org/isni/$1"},"prefixcommons":null,"wikidata":{"description":"International Standard Name Identifier for an identity. Starting with 0000.","examples":["000000006629310X","0000000103545207","0000000109397559","0000000121430569","0000000122974701","0000000123317789","0000000403855362"],"name":"ISNI","pattern":"^[0]{7}[0-9]{8}[0-9X]$","prefix":"P213","uri_format":"https://isni.org/isni/$1","xrefs":{"wikidata":"Q423048"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"isni","uri_format":"https://isni.org/isni/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. As ISO 27729, it is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, and ISWC.\n\nThe mission of the ISNI International Agency (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.\n\nBy achieving these goals, the ISNI will act as a bridge identifier across multiple domains and become a critical component in Linked Data and Semantic Web applications.","homepage":"https://isni.org/","license":{"spdx":"http://rightsstatements.org/vocab/InC/1.0","url":"http://rightsstatements.org/vocab/InC/1.0/"},"name":"International Standard Name Identifier","prefix":"20464","short_names":["ISNI"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iso.3166":{"prefix":"iso.3166","name":"ISO 3166-1 Country Code","description":"An identifier for a country in numeric format per ISO 3166-1","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.iso.org/iso-3166-country-codes.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"554","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P299"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a country in numeric format per ISO 3166-1","examples":["276","554"],"name":"ISO 3166-1 numeric code","prefix":"P299","uri_format":"https://data.who.int/countries/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iso.639-3":{"prefix":"iso.639-3","name":"ISO 639 3-Letter Language Code","description":"Since the introduction of ISO 639-3 in 2007, access to language information has increased tremendously. The code set initially adopted as ISO639-3:2007 was based on a harmonization of ISO 639-2 with the code set of SIL’s Ethnologue 15th edition and languages from Linguist List to form a comprehensive set of code elements for world languages. SIL International, the Language Coding Agency for 639-3, relies on the contributions of linguists, language coding experts, and language users around the world to maintain and improve the code set through the change request process defined in the ISO 639 standard. [from homepage]","pattern":null,"uri_format":"https://iso639-3.sil.org/code/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"loc","name":"ISO 639-2: Codes for the Representation of Names of Languages - Part 2: Alpha-3 Code for the Names of Languages","description":"ISO 639-2 is part of the ISO 639 language code family, which provides also a two-character code set (ISO 639-1) for the representation of names of languages. ISO 639-2 contains codes for all languages contained in ISO 639-1 and several hundred additional languages. The ISO 639-2 (Bibliographic) codes were devised for use in bibliographic metadata, e.g., for libraries, information services, and publishers, and ISO 639-2 (Terminology) targets terminology, lexicography, and linguistic applications. The lists are the same except for 20 languages that have different Bibliographic and Terminology codes. The list contains over 500 discrete codes. The ISO 639-2 (Bibliographic) codes are equivalent to the MARC Language Codes. The ISO 639-2 codes are linked to two-character codes for the same language in ISO 639-1, to the MARC Language Codes, and to equivalent codes for language groups in ISO 639-5. [from homepage]","homepage":"http://id.loc.gov/vocabulary/iso639-2","uri_format":"http://id.loc.gov/vocabulary/iso639-2/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://iso639-3.sil.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"spa","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.33aa85","hl7":"1.0.639.3"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1614,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"ISO 639-3 provides a comprehensive set of identifiers for all languages for use in a wide range of applications, including linguistics, lexicography and internationalization of information systems. It attempts to represent all known full languages. ISO 639 provides three language code sets: one is a two-letter code (ISO 639-1) and two others are three-letter codes (ISO 639-2 and ISO 639-3) for the representation of names of languages. The three-letter codes in ISO 639-2 and ISO 639-3 are complementary and compatible. The two codes have been devised for different purposes. The set of individual languages listed in ISO 639-2 is a subset of those listed in ISO 639-3. The codes differ in that ISO 639-2 includes code elements representing some individual languages and also collections of languages, while ISO 639-3 includes code elements for all known individual languages but not for collections of languages. Overall, the set of individual languages listed in ISO 639-3 is much larger than the set of individual languages listed in ISO 639-2.","homepage":"https://www.iso.org/standard/39534.html","keywords":["Linguistics","Informatics","Computer Science","Language"],"name":"ISO 639-3 Codes for the representation of names of languages - Part 3: Alpha-3 code for comprehensive coverage of languages","prefix":"FAIRsharing.33aa85","short_names":["ISO 639-3"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"ISO 639-3 is a code that aims to define three-letter identifiers for all known human languages. At the core of ISO 639-3 are the individual languages already accounted for in ISO 639-2. The large number of living languages in the initial inventory of ISO 639-3 beyond those already included in ISO 639-2 was derived primarily from Ethnologue (15th edition). Additional extinct, ancient, historic, and constructed languages have been obtained from Linguist List.SIL International has been designated as the ISO 639-3/RA for the purpose of processing requests for alpha-3 language codes comprising the International Standard, Codes for the representation of names of languages - Part 3: Alpha-3 code for comprehensive coverage of languages. The ISO 639-3/RA receives and reviews applications for requesting new language codes and for the change of existing ones according to criteria indicated in the standard. It maintains an accurate list of information associated with registered language codes which can be viewed on or downloaded from this website, and processes updates of registered language codes. Notification of pending and adopted updates are also distributed on a regular basis to subscribers and other parties.","extras":{"organization":"SIL International"},"homepage":"http://www.sil.org/ISO639-3/","name":"ISO 639-3 Language Codes Alpha 3","preferred_prefix":"iso639-3","prefix":"1.0.639.3","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iso15926":{"prefix":"iso15926","name":"ISO 15926-14","description":"The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)","pattern":null,"uri_format":"http://standards.iso.org/iso/15926/part14/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://15926.org/home/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"activityBoundOf","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/uwasystemhealth/modular_ontologies/raw/master/LIS-14.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"isrctn":{"prefix":"isrctn","name":"International Clinical Trials Registry Platform","description":"The International Clinical Trials Registry Platform, originally called International Standard Randomised Controlled Trial Number (ISRCTN) registry, is a primary clinical study registry recognised by the World Health Organisation (WHO) and the International Committee of Medical Journal Editors (ICMJE) that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)","pattern":"^ISRCTN\\d+$","uri_format":"https://www.isrctn.com/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"doi","name":"DOI","description":"DOI resolution of ISRCTN","homepage":"https://doi.org/10.1186","uri_format":"https://doi.org/10.1186/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"who","name":"WHO Clinical Trials Search","description":"WHO Clinical Trials Search","homepage":"https://trialsearch.who.int","uri_format":"https://trialsearch.who.int/Trial2.aspx?TrialID=$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://www.isrctn.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ISRCTN10175490","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"clinical trial","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"issn":{"prefix":"issn","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ISSN","biolink":"issn","go":"ISSN","miriam":"issn","n2t":"issn"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.","examples":["0745-4570"],"extras":{"miriam_id":"00000301","namespaceEmbeddedInLui":false},"homepage":"https://portal.issn.org","name":"ISSN","pattern":"^\\d{4}-\\d{3}[\\dX]$","prefix":"issn","providers":[{"code":"","description":"ISSN at Library of Congress","homepage":"http://catalog.loc.gov","name":"ISSN at Library of Congress","uri_format":"https://search.catalog.loc.gov/search?option=keyword&query=$1"}],"status":"active","uri_format":"https://portal.issn.org/resource/ISSN/$1"},"n2t":{"description":"The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.","examples":["1776-3045"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://portal.issn.org","name":"ISSN Portal","pattern":"^\\d{4}-\\d{3}[\\dX]$","prefix":"issn","uri_format":"https://portal.issn.org/resource/ISSN/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.issn.org/","name":"International Standard Serial Number","prefix":"ISSN"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"issn","uri_format":"https://portal.issn.org/resource/ISSN/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ISSN","uri_format":"http://identifiers.org/issn/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"istransbase":{"prefix":"istransbase","name":"ISTransbase","description":"ISTransbase is a highly reliable and accessible database that focuses on inhibitors and substrates of drug transporters, offering a wealth of vital information encompassing experimental methods, transport parameters, and references.","pattern":null,"uri_format":"https://istransbase.scbdd.com/database/trans/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://istransbase.scbdd.com/","repository":null,"contact":{"name":"Dongsheng Cao","orcid":null,"email":"oriental-cds@163.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IST028","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"38943608","doi":"10.1093/database/baae053","pmc":"PMC11214160","title":"ISTransbase: an online database for inhibitor and substrate of drug transporters","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tanay Shah","orcid":"0009-0001-1912-5132","email":"shah.tanay2@northeastern.edu","github":"tanayshah2"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1145,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"itis":{"prefix":"itis","name":"Integrated Taxonomic Information System","description":"Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.","pattern":"^\\d+$","uri_format":"https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.itis.gov/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"589462","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/itis/itis.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/itis/itis.obo","download_json":"https://w3id.org/biopragmatics/resources/itis/itis.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"17791","integbio":"nbdc00916","re3data":"r3d100011213","wikidata":"P815","wikidata.entity":"Q82575"},"synonyms":null,"keywords":null,"domain":"taxonomy","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.itis.gov/Static/images/ITIS-Logo.jpg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a taxon in the Integrated Taxonomic Information System","examples":["160330","162003"],"homepage":"https://www.itis.gov","name":"ITIS TSN","pattern":"^[1-9]\\d{1,6}$","prefix":"P815","uri_format":"https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world.","homepage":"https://www.itis.gov/","name":"ITIS","prefix":"r3d100011213","prefix_synonyms":["Integrated Taxonomic Information System"],"xrefs":{"doi":"10.17616/R32W4W"}},"hl7":null,"bartoc":{"description":"ITIS is an easily accessible database with reliable information on species names and their hierarchical classification that is publicly accessible with unlimited free use. The database is reviewed periodically to ensure high quality with valid classifications, revisions, and additions of newly described species. The ITIS includes documented taxonomic information of flora and fauna from both aquatic and terrestrial habitats. For each scientific name, ITIS includes the authority, taxonomic rank, a unique taxonomic serial number, data source information, data quality indicators, and associated synonyms and vernacular names where available. Geographic coverage is worldwide, with an emphasis on North American taxa. The ITIS Web Services provide the ability to search and retrieve data from ITIS by providing access to the data behind the ITIS web site (http://www.itis.gov/web_service.html#). There is also web interface for viewing reports, and several options for text downloads. Each part of the basic WSDL web services is provided by a web service API, which defines the name, input to, and output from the service for a particular data request.","homepage":"https://www.itis.gov/","name":"Integrated Taxonomic Information System","prefix":"17791","xrefs":{"wikidata":"Q82575"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"ITIS is a database of taxonomic nomenclature and information used in biodiversity and ecosystem preservation programs. The database contains information on species and serves as a respository for biodiversity information for US government programs. The database can be searched by taxon or hierarchically, and taxonomic data can be downloaded.","homepage":"http://www.itis.gov","keywords":["Organism","Ontology/Terminology/Nomenclature","Bibliography/Documents","Taxonomy","Repository"],"name":"ITIS","prefix":"nbdc00916","status":"active","xrefs":{"fairsharing":"biodbcore-000597"}},"pathguide":null,"tib":null},"itmctr":{"prefix":"itmctr","name":"International Traditional Medicine Clinical Trial Registry","description":"The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)","pattern":"^ITMCTR\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://itmctr.ccebtcm.org.cn","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ITMCTR2023000002","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"clinical trial","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"http://itmctr.ccebtcm.org.cn/Content/images/ny_logo.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ito":{"prefix":"ito","name":null,"description":null,"pattern":"^\\d+$","uri_format":"https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://openbiolink.github.io/ITOExplorer/","repository":"https://github.com/OpenBioLink/ITO","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01625","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"ITO","banana_peel":"_","deprecated":null,"mappings":{"aberowl":"ITO","bioportal":"ITO","fairsharing":"FAIRsharing.89e853","miriam":"ito"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"35715466","doi":"10.1038/s41597-022-01435-x","pmc":"PMC9205953","title":"A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks","year":2022},{"pubmed":null,"doi":"10.5281/zenodo.5561989","pmc":null,"title":"Intelligence Task Ontology and Knowledge Graph (ITO)","year":2022},{"pubmed":null,"doi":"10.48550/arxiv.2110.01434","pmc":null,"title":"A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.","examples":["ITO_01625"],"extras":{"miriam_id":"00000802","namespaceEmbeddedInLui":false},"homepage":"https://bioportal.bioontology.org/","name":"Intelligence Task Ontology","pattern":"^.+$","prefix":"ito","status":"active","uri_format":"https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"description":"The Intelligence Task Ontology and Knowledge Graph (ITO) provides a comprehensive, curated model of artificial intelligence tasks, benchmarks and benchmark results, including the biomedical domain. NOTE: The version uploaded to BioPortal has all instances and benchmark data removed because of performance issues with the BioPortal class browser. Please refer to https://github.com/OpenBioLink/ITO/ for downloading the full version of the ontology and dataset.","homepage":"https://github.com/OpenBioLink/ITO/","name":"Intelligence Task Ontology","prefix":"ITO","version":"1.12 (PWC export dated 2022-07-30) - internal, just a minor fix"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/ITO/17/ito.owl"}],"description":"The Intelligence Task Ontology and Knowledge Graph (ITO) provides a comprehensive, curated model of artificial intelligence tasks, benchmarks and benchmark results, including the biomedical domain. NOTE: The version uploaded to BioPortal has all instances and benchmark data removed because of performance issues with the BioPortal class browser. Please refer to https://github.com/OpenBioLink/ITO/ for downloading the full version of the ontology and dataset.","homepage":"https://github.com/OpenBioLink/ITO/","name":"Intelligence Task Ontology","prefix":"ITO","version":"1.12 (PWC export dated 2022-07-30) - internal, just a minor fix"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"matthias.samwald@meduniwien.ac.at","name":"Matthias Samwald","orcid":"0000-0002-4855-2571"},"description":"The Intelligence Task Ontology and Knowledge Graph (ITO) provides comprehensive, curated and interlinked data of artificial intelligence tasks, benchmarks, AI performance metrics, benchmark results and research papers. ITO ontology aims to support 1) Manual curation of AI task classification hierarchies and performance metrics, enabling more precise analyses; 2) Representing data as a graph, facilitating network-based query and analysis; 3) Allowing for easy integration and enrichment with external data, as well as simple extensibility for modeling related knowledge domains from other domains; 4) Allowing for automated deductive inference and automated knowledge base consistency checking; 5) Allowing for ongoing, collaborative expert curation of underlying ontological models. ITO aims to enable precise and network-based analyses of the global landscape of AI tasks and capabilities based on technologies that allow for easy integration and enrichment with external data, automated inference and continuous, collaborative expert curation of underlying ontological models. ","homepage":"https://github.com/OpenBioLink/ITO","keywords":["Artificial Intelligence","Machine Learning","Natural Language Processing"],"license":{"url":"https://creativecommons.org/licenses/by-sa/3.0/at/legalcode"},"name":"Intelligence Task Ontology and Knowledge Graph","prefix":"FAIRsharing.89e853","publications":[{"doi":"10.48550/arxiv.2110.01434","title":"A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks","url":"https://doi.org/10.48550/arXiv.2110.01434","year":2021},{"doi":"10.1038/s41597-022-01435-x","title":"A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks","url":"http://dx.doi.org/10.1038/s41597-022-01435-x","year":2022},{"doi":"10.5281/zenodo.5561989","title":"Intelligence Task Ontology and Knowledge Graph (ITO)","url":"https://doi.org/10.5281/zenodo.5561989","year":2022}],"short_names":["ITO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iuphar.family":{"prefix":"iuphar.family","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-SA-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IUPHAR.FAMILY","miriam":"iuphar.family","n2t":"iuphar.family"},"synonyms":["IUPHARfam"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.","examples":["78"],"extras":{"miriam_id":"00000317","namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/","name":"IUPHAR family","pattern":"^\\d+$","prefix":"iuphar.family","status":"active","uri_format":"http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1"},"n2t":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.","examples":["78"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/","name":"The IUPHAR/BPS Guide to PHARMACOLOGY","pattern":"^\\d+$","prefix":"iuphar.family","uri_format":"http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IUPHAR.FAMILY","uri_format":"http://identifiers.org/iuphar.family/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"iuphar.ligand":{"prefix":"iuphar.ligand","name":"Guide to Pharmacology Ligand","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-SA-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IUPHAR.LIGAND","biolink":"GTOPDB","miriam":"iuphar.ligand","n2t":"iuphar.ligand","togoid":"IupharLigand","wikidata":"P595"},"synonyms":["IUPHAR_LIGAND","IUPHAR_LIGAND_ID"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.","examples":["1755"],"extras":{"miriam_id":"00000457","namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all","name":"IUPHAR ligand","pattern":"^\\d+$","prefix":"iuphar.ligand","status":"active","uri_format":"http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"},"n2t":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.","examples":["1755"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all","name":"IUPHAR ligand at University of Edinburgh","pattern":"^\\d+$","prefix":"iuphar.ligand","uri_format":"http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"},"prefixcommons":null,"wikidata":{"description":"ligand identifier of the Guide to Pharmacology database","examples":["1627","2286","5"],"homepage":"https://www.guidetopharmacology.org/","name":"Guide to Pharmacology Ligand ID","pattern":"^\\d{1,4}$","prefix":"P595","uri_format":"https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"GTOPDB","uri_format":"https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IUPHAR.LIGAND","uri_format":"http://identifiers.org/iuphar.ligand/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"examples":["11152","2355","2870","4047","50","5714","6382","7792","8339","965"],"keywords":["Compound"],"name":"IUPHAR ligand","pattern":"^(?\\d+)$","prefix":"IupharLigand","uri_format":"http://identifiers.org/iuphar.ligand/$1"},"integbio":null,"pathguide":null,"tib":null},"iuphar.receptor":{"prefix":"iuphar.receptor","name":"Guide to Pharmacology Target","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Simon Douglas Harding","orcid":"0000-0002-9262-8318","email":"simon.harding@igmm.ed.ac.uk","github":"simondharding"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-SA-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"IUPHAR.RECEPTOR","go":"IUPHAR_RECEPTOR","miriam":"iuphar.receptor","n2t":"iuphar.receptor","uniprot":"DB-0182","wikidata":"P5458"},"synonyms":["IUPHAR_GPCR","IUPHARobj"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34718737","doi":"10.1093/nar/gkab1010","pmc":"PMC8689838","title":"The IUPHAR/BPS guide to PHARMACOLOGY in 2022: curating pharmacology for COVID-19, malaria and antibacterials","year":2022},{"pubmed":"23003568","doi":"10.1111/j.1476-5381.2012.02141.x","pmc":"PMC3575771","title":"GuideToPharmacology.org--an update","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.","examples":["101"],"extras":{"miriam_id":"00000281","namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/targets.jsp","name":"IUPHAR receptor","pattern":"^\\d+$","prefix":"iuphar.receptor","status":"active","uri_format":"http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"},"n2t":{"description":"The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.","examples":["101"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.guidetopharmacology.org/targets.jsp","name":"IUPHAR Receptor at University of Edinburgh","pattern":"^\\d+$","prefix":"iuphar.receptor","uri_format":"http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"},"prefixcommons":null,"wikidata":{"description":"target identifier of the Guide to Pharmacology database","examples":["1","214","620"],"homepage":"https://www.guidetopharmacology.org/GRAC/","name":"Guide to Pharmacology Target ID","pattern":"^[1-9]\\d{0,3}$","prefix":"P5458","uri_format":"https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"},"wikidata_entity":null,"go":{"homepage":"http://www.iuphar.org/","name":"International Union of Pharmacology","prefix":"IUPHAR_RECEPTOR","uri_format":"https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.guidetopharmacology.org","keywords":["Chemistry databases"],"name":"IUPHAR/BPS Guide to PHARMACOLOGY","prefix":"DB-0182","publications":[{"doi":"10.1093/nar/gkab1010","pubmed":"34718737"}],"short_names":["GuidetoPHARMACOLOGY"],"uri_format":"https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"IUPHAR.RECEPTOR","uri_format":"http://identifiers.org/iuphar.receptor/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ivdb":{"prefix":"ivdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"ivdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively.","examples":["E13035"],"homepage":"http://influenza.psych.ac.cn/","keywords":["genome","DNA","gene"],"name":"Influenza Virus Database","pattern":"^[A-Z]+\\d+$","prefix":"ivdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ivdb:$1"}],"uri_format":"http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jaxmice":{"prefix":"jaxmice","name":"Jackson Laboratories Mouse Strain","description":"A catalogue of mouse strains supplied by The Jackson Laboratory. Each identifier corresponds to a mouse strain.","pattern":"^\\d{6}$","uri_format":"https://www.jax.org/strain/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mice.jax.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"004435","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JAXMICE","miriam":"jaxmice","n2t":"jaxmice","rrid":"IMSR_JAX"},"synonyms":["jax","jaxMiceUID"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.","examples":["005012"],"extras":{"miriam_id":"00000337","namespaceEmbeddedInLui":false},"homepage":"http://jaxmice.jax.org/","name":"JAX Mice","pattern":"^\\d+$","prefix":"jaxmice","status":"active","uri_format":"http://jaxmice.jax.org/strain/$1.html"},"n2t":{"description":"JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.","examples":["005012"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://jaxmice.jax.org/","name":"JAX Mice at Jackson Laboratory","pattern":"^\\d+$","prefix":"jaxmice","uri_format":"http://jaxmice.jax.org/strain/$1.html"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JAXMICE","uri_format":"http://identifiers.org/jaxmice/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"https://www.jax.org/jax-mice-and-services","keywords":["gene","genetic engineering","knockout","mice","model","mouse","repository","research","strain","subject","supply"],"name":"JAX Mice and Services","prefix":"IMSR_JAX","short_names":["JAX, JAX MS, JMS,IMSR_JAX"],"xrefs":{"scr":"016408"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jcggdb":{"prefix":"jcggdb","name":"Japan Consortium for Glycobiology and Glycotechnology Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JCGGDB","integbio":"nbdc01164","miriam":"jcggdb","n2t":"jcggdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.","examples":["JCGG-STR008690"],"extras":{"miriam_id":"00000479","namespaceEmbeddedInLui":false},"homepage":"http://jcggdb.jp/index_en.html","name":"JCGGDB","pattern":"^JCGG-STR\\d{6}$","prefix":"jcggdb","status":"deprecated","uri_format":"http://jcggdb.jp/idb/jcggdb/$1"},"n2t":{"description":"JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.","examples":["JCGG-STR008690"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://jcggdb.jp/index_en.html","name":"JCGGDB at Advanced Science Institute (Japan)","pattern":"^JCGG-STR\\d{6}$","prefix":"jcggdb","uri_format":"http://jcggdb.jp/idb/jcggdb/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JCGGDB","uri_format":"http://identifiers.org/jcggdb/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"This site is a search tool of JCGGDB which is a database of glycan-related data in Japan. It allows to search glycan structures using the monosaccharide symbol defined by the Consortium for Functional Glycomics (CFG) in U.S.A.","homepage":"https://jcggdb.jp/idb/flash/GlycoEditor.jsp","keywords":["Carbohydrate","Image/Movie","Chemical structure"],"name":"JCGGDB","prefix":"nbdc01164","status":"active"},"pathguide":null,"tib":null},"jcm":{"prefix":"jcm","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JCM","miriam":"jcm","n2t":"jcm","ncbi":"JCM","prefixcommons":"jcm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.","examples":["17254"],"extras":{"miriam_id":"00000174","namespaceEmbeddedInLui":false},"homepage":"http://www.jcm.riken.go.jp/","name":"Japan Collection of Microorganisms","pattern":"^\\d+$","prefix":"jcm","status":"active","uri_format":"http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"},"n2t":{"description":"The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.","examples":["17254"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.jcm.riken.go.jp/","name":"JCM at RIKEN BioResource Center","pattern":"^\\d+$","prefix":"jcm","uri_format":"http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"},"prefixcommons":{"description":"The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.","examples":["17254"],"homepage":"http://www.jcm.riken.go.jp/","keywords":["microbial","taxonomy"],"name":"Japan Collection of Microorganisms","pattern":"^\\d+$","prefix":"jcm","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/jcm:$1"}],"uri_format":"http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["1339"],"homepage":"http://www.jcm.riken.go.jp/","name":"Japan Collection of Microorganisms","prefix":"JCM"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JCM","uri_format":"http://identifiers.org/jcm/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jcrb":{"prefix":"jcrb","name":"JRBC Cell Bank","description":null,"pattern":"^JCRB\\d+$","uri_format":"https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://cellbank.nibiohn.go.jp","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"JCRB1355","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"JCRB"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://cellbank.nibiohn.go.jp/english/","name":"Japanese Collection of Research Bioresources Cell Bank","prefix":"JCRB","uri_format":"https://cellbank.nibiohn.go.jp//~cellbank/en/search_res_det.cgi?RNO=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jcsd":{"prefix":"jcsd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"stirdf","name":"Unknown","description":"Appears in iobc","homepage":"http://stirdf.jst.go.jp","uri_format":"http://stirdf.jst.go.jp/cde/nikkaji/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JCSD","miriam":"jcsd","n2t":"jcsd","prefixcommons":"nikkaji","wikidata":"P2085"},"synonyms":["Nikkaji number","nikkaji"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).","examples":["J55.713G"],"extras":{"miriam_id":"00000241","namespaceEmbeddedInLui":false},"homepage":"http://jglobal.jst.go.jp/en/","name":"Japan Chemical Substance Dictionary","pattern":"^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$","prefix":"jcsd","status":"active","uri_format":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"},"n2t":{"description":"The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).","examples":["J55.713G"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://jglobal.jst.go.jp/en/","name":"Japan Chemical Substance Dictionary","pattern":"^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$","prefix":"jcsd","uri_format":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"},"prefixcommons":{"description":"an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).","examples":["J818D"],"homepage":"http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp","keywords":["drug"],"license":{"name":"http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp","url":"http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp"},"name":"Japan Chemical Substance Dictionary (Nikkaji)","pattern":"^J\\d+$","prefix":"nikkaji","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nikkaji:$1"}]},"wikidata":{"description":"identifier for a chemical compound in the Japan Chemical Substance Dictionary (Nikkaji)","examples":["J2.375B","J4.021E"],"homepage":"http://www.genome.jp/kegg","name":"Nikkaji ID","prefix":"P2085","uri_format":"https://jglobal.jst.go.jp/redirect?Nikkaji_No=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JCSD","uri_format":"http://identifiers.org/jcsd/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jecfa":{"prefix":"jecfa","name":"Joint FAO/WHO Expert Committee on Food Additives","description":"JECFA provides identifiers for flavors, food additives, contaminants, toxicants, and veterinary drugs. Each entry includes chemical details, acceptable or tolerable intake limits, and links to related reports and monographs.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://apps.who.int/food-additives-contaminants-jecfa-database","repository":null,"contact":{"name":"Kim Petersen","orcid":null,"email":"kpetersen@who.int","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2116","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P9557"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1247,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for food additives assigned by Joint FAO/WHO Expert Committee on Food Additives","examples":["1","1851","2","3","4"],"name":"JECFA number","pattern":"^[1-9]\\d*$","prefix":"P9557"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jgi.proposal":{"prefix":"jgi.proposal","name":"Joint Genome Institute Proposals","description":"Identifiers for proposals/projects at the Joint Genome Institute","pattern":"^\\d+$","uri_format":"https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://genome.jgi.doe.gov/portal/","repository":null,"contact":{"name":"Steven E. Wilson","orcid":"0000-0002-8489-208X","email":"sewilson@lbl.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"502930","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34006627","doi":"10.1128/msystems.00804-20","pmc":"PMC8269246","title":"DOE JGI Metagenome Workflow","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contributor_extras":[{"name":"Alicia Clum","orcid":"0000-0002-5004-3362","email":"aclum@lbl.gov","github":"aclum"}],"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":853,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jrct":{"prefix":"jrct","name":"Japan Registry of Clinical Trials","description":"This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)","pattern":"^jRCT\\w?\\d+$","uri_format":"https://jrct.niph.go.jp/en-latest-detail/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"detail","name":"Japan Registry of Clinical Trials (Details)","description":"Japan Registry of Clinical Trials (Details)","homepage":"https://jrct.niph.go.jp","uri_format":"https://jrct.niph.go.jp/latest-detail/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://jrct.niph.go.jp","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"jRCTs041220087","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jstor":{"prefix":"jstor","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JSTOR","go":"JSTOR","miriam":"jstor","n2t":"jstor"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.","examples":["3075966"],"extras":{"miriam_id":"00000444","namespaceEmbeddedInLui":false},"homepage":"http://www.jstor.org/","name":"JSTOR","pattern":"^\\d+$","prefix":"jstor","status":"active","uri_format":"http://www.jstor.org/stable/$1"},"n2t":{"description":"JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.","examples":["3075966"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.jstor.org/","name":"JSTOR Online","pattern":"^\\d+$","prefix":"jstor","uri_format":"http://www.jstor.org/stable/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.jstor.org/","name":"Digital archive of scholarly articles","prefix":"JSTOR","uri_format":"https://www.jstor.org/stable/$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JSTOR","uri_format":"http://identifiers.org/jstor/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"jws":{"prefix":"jws","name":null,"description":null,"pattern":null,"uri_format":"https://jjj.bio.vu.nl/models/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Brett G. Olivier","orcid":"0000-0002-5293-5321","email":"brettolivier@gmail.com","github":"bgoli"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"achcar11","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"JWS","miriam":"jws","n2t":"jws","prefixcommons":"jws"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"15072998","doi":"10.1093/bioinformatics/bth200","pmc":null,"title":"Web-based kinetic modelling using JWS Online","year":2004},{"pubmed":"15072998","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.","examples":["curien1"],"extras":{"miriam_id":"00000130","namespaceEmbeddedInLui":false},"homepage":"http://jjj.bio.vu.nl/models/","name":"JWS Online","pattern":"^\\w+$","prefix":"jws","providers":[{"code":"","description":"JWS Online Model Repository at Stellenbosch","homepage":"http://jjj.biochem.sun.ac.za/models/","name":"JWS Online Model Repository at Stellenbosch","uri_format":"http://jjj.biochem.sun.ac.za/models/$1/"},{"code":"","description":"JWS Online Model Repository at Manchester","homepage":"http://jjj.mib.ac.uk/models","name":"JWS Online Model Repository at Manchester","uri_format":"http://jjj.mib.ac.uk/models/$1"}],"status":"active","uri_format":"http://jjj.bio.vu.nl/models/$1/"},"n2t":{"description":"JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.","examples":["curien"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://jjj.mib.ac.uk/index.html","name":"JWS Online Model Repository at Manchester","pattern":"^\\w+$","prefix":"jws","uri_format":"http://jjj.mib.ac.uk/models/$1"},"prefixcommons":{"description":"JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.","examples":["curien"],"homepage":"http://jjj.mib.ac.uk/index.html","keywords":["model","pathway"],"name":"JWS Online Model Repository","pattern":"^\\w+$","prefix":"jws","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/jws:$1"}],"publications":[{"pubmed":"15072998"}],"uri_format":"http://jjj.mib.ac.uk/cgi-bin/processModelSelection.py?keytype=modelname&keyword=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"JWS","uri_format":"http://identifiers.org/jws/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kaggle":{"prefix":"kaggle","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"kaggle","n2t":"kaggle","re3data":"r3d100012705"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.","examples":["nasa/kepler-exoplanet-search-results"],"extras":{"miriam_id":"00000682","namespaceEmbeddedInLui":false},"homepage":"https://kaggle.com","name":"Kaggle","pattern":"^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$","prefix":"kaggle","status":"active","uri_format":"https://www.kaggle.com/$1"},"n2t":{"description":"Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.","examples":["nasa/kepler-exoplanet-search-results"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://kaggle.com","name":"Kaggle","pattern":"^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$","prefix":"kaggle","uri_format":"https://www.kaggle.com/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"Kaggle is a platform for predictive modelling and analytics competitions in which statisticians and data miners compete to produce the best models for predicting and describing the datasets uploaded by companies and users. This crowdsourcing approach relies on the fact that there are countless strategies that can be applied to any predictive modelling task and it is impossible to know beforehand which technique or analyst will be most effective.","homepage":"https://www.kaggle.com/datasets","name":"Kaggle","prefix":"r3d100012705","prefix_synonyms":["Your home for data science"],"xrefs":{"doi":"10.17616/R32N5V"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kaken":{"prefix":"kaken","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P9776"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for researchers in Japan used in government-based research funding (from 1980s)","examples":["00011461","10295694","90050426"],"homepage":"https://nrid.nii.ac.jp/ja/search/?kw=","name":"e-Rad researcher number","pattern":"^\\d{8}$","prefix":"P9776","uri_format":"https://nrid.nii.ac.jp/ja/nrid/10000$1","xrefs":{"wikidata":"Q107428430"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kclb":{"prefix":"kclb","name":"Korean Cell Line Bank","description":null,"pattern":null,"uri_format":"https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://cellbank.snu.ac.kr/english","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"10020.2","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"KCLB"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://cellbank.snu.ac.kr/en","name":"Korean Cell Line Bank","prefix":"KCLB","uri_format":"https://cellbank.snu.ac.kr/cellline/search?sc=y&q=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kcris":{"prefix":"kcris","name":"Korean Clinical Research Information Service","description":"The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space","pattern":"^KCT\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://cris.nih.go.kr","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"KCT0008394","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://cris.nih.go.kr/cris/search/detailSearchEn.do?seq=23973"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kdbirp":{"prefix":"kdbirp","name":"Kinetic Data of RNA-Protein Interactions Database","description":"Identifiers represent RNA-protein interaction entries with quantitative kinetic data in the Kinetic Data of Biomolecular Interactions for RNA-Protein database (KDBI-RP), which is an open-access database cataloging association rates, dissociation rates, and equilibrium dissociation constants for RNA-protein interactions.","pattern":"^\\d+$","uri_format":"http://www.kdbirp.aiddlab.com/detail/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.kdbirp.aiddlab.com","repository":null,"contact":{"name":"Xian Zeng","orcid":"0000-0002-1397-554X","email":"zengxian@fudan.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"183","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["binding affinity","kinetics","rna-protein interactions"],"domain":"relationship","references":null,"publications":[{"pubmed":"40716733","doi":"10.1016/j.jmb.2025.169357","pmc":null,"title":"KDBI-RP: Kinetic Data of RNA-Protein Interactions Database","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Kangho Ji","orcid":"0009-0009-3402-8013","email":"ji.kang@northeastern.edu","github":"kanghosaeyo"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1717,"logo":"http://www.kdbirp.aiddlab.com/static/images/logo2.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kdsf.ffk":{"prefix":"kdsf.ffk","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/KDSF-FFK/kdsf-ffk","repository":"https://github.com/KDSF-FFK/kdsf-ffk","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ErdeUndKosmos","example_extras":["111"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20288","tib":"kdsfffk"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"homepage":"https://w3id.org/kdsf-ffk/","license":{"spdx":"CC BY-SA 4.0","url":"http://creativecommons.org/licenses/by-sa/4.0/"},"prefix":"20288","short_names":["kdsf-ffk"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/KDSF-FFK/kdsf-ffk/main/FFK.ttl"}],"description":"Klassifikation für interdisziplinäre Forschungsfelder im Rahmen des Kerndatensatz Forschung","keywords":["NFDI4ING","FID move","Digital Planning and Construction","FID BAUdigital","computer science"],"name":"Interdisziplinäre Forschungsfeldklassifikation","prefix":"kdsfffk","tracker":"https://github.com/KDSF-FFK/kdsf-ffk/issues","uri_format":"https://w3id.org/kdsf-ffk/$1"}},"kegg":{"prefix":"kegg","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"biocontext":"KEGG","biolink":"KEGG","cheminf":"000409","go":"KEGG","integbio":"nbdc00530","miriam":"kegg","n2t":"kegg","pathguide":"16","prefixcommons":"kegg","uniprot":"DB-0053","wikidata":"P665"},"synonyms":["KEGG"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27899662","doi":"10.1093/nar/gkw1092","pmc":"PMC5210567","title":"KEGG: new perspectives on genomes, pathways, diseases and drugs","year":2016},{"pubmed":"9287494","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16381885","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681412","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24214961","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"39417505","doi":"10.1093/nar/gkae909","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"KEGG prefix has been split into several others","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.kegg.jp/Fig/kegg128.gif","miriam":{"description":"Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.","examples":["hsa00190"],"extras":{"miriam_id":"00000578","namespaceEmbeddedInLui":false},"homepage":"http://www.kegg.jp/","name":"Kyoto Encyclopedia of Genes and Genomes","pattern":"^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$","prefix":"kegg","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.","examples":["hsa00190"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.kegg.jp/","name":"KEGG at Kyoto University Bioinformatics Center","pattern":"^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$","prefix":"kegg","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"KEGG is an integrated database resource consisting of 16 main databases, broadly categorized into biological systems information, genomic information, and chemical information.","examples":["D00123"],"homepage":"http://www.genome.jp/kegg/","keywords":["pathway","classification","ontology","small molecule","gene","DNA","protein","enzyme"],"name":"Kyoto Encyclopedia of Genes and Genomes","prefix":"kegg","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg:$1"}]},"wikidata":{"description":"identifier from databases dealing with genomes, enzymatic pathways, and biological chemicals","examples":["D00018","D05961"],"homepage":"https://www.kegg.jp/","name":"KEGG ID","pattern":"^[A-Z]\\d+$","prefix":"P665","uri_format":"https://www.kegg.jp/entry/$1","uri_format_rdf":"http://www.kegg.jp/entry/$1","xrefs":{"miriam":"kegg"}},"wikidata_entity":null,"go":{"homepage":"http://www.genome.ad.jp/kegg/","name":"Kyoto Encyclopedia of Genes and Genomes","prefix":"KEGG"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.genome.jp/kegg/","keywords":["Genome annotation databases"],"name":"KEGG","prefix":"DB-0053","publications":[{"doi":"10.1093/nar/gkae909","pubmed":"39417505"}],"short_names":["KEGG"],"uri_format":"https://www.genome.jp/dbget-bin/www_bget?$1"},"biolink":{"prefix":"KEGG","uri_format":"http://www.kegg.jp/entry/$1"},"cellosaurus":null,"ontobee":null,"cheminf":{"description":"Database identifier used by KEGG.","name":"KEGG","prefix":"000409"},"fairsharing":null,"biocontext":{"prefix":"KEGG","uri_format":"http://identifiers.org/kegg/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG is an integrated database for interpretation of biological systems from genomic and molecular-level information. KEGG consists of 16 main databases categorized into systems information, genomic information and chemical information. This database features to map elementary datasets (genes, small molecules, etc) in each KEGG database to network datasets (pathway maps, hierarchical lists, etc). Users can perform keyword search against the entire KEGG database, as well as BLAST/FASTA search and SIMCOMP search.","homepage":"http://www.kegg.jp/kegg/","keywords":["Portal"],"name":"Kyoto Encyclopedia of Genes and Genomes","prefix":"nbdc00530","publications":[{"pubmed":"9287494"},{"pubmed":"16381885"},{"pubmed":"14681412"},{"pubmed":"24214961"}],"short_names":["KEGG"],"status":"active","xrefs":{"fairsharing":"biodbcore-000663"}},"pathguide":{"homepage":"http://www.genome.jp/kegg/","keywords":["BioPAX"],"name":"Kyoto Encyclopedia of Genes and Genomes","prefix":"16","short_names":["KEGG"]},"tib":null},"kegg.brite":{"prefix":"kegg.brite","name":null,"description":null,"pattern":null,"uri_format":"https://www.kegg.jp/brite/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.genome.jp/kegg/brite.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ko00002","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"KEGG.BRITE","integbio":"nbdc00115","prefixcommons":"kegg.brite"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":null,"n2t":null,"prefixcommons":{"description":"KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships.","examples":["ko00071"],"homepage":"http://www.genome.jp/kegg/brite.html","keywords":["pathway","classification","ontology"],"name":"KEGG BRITE","pattern":"^[ko/br]\\d+$","prefix":"kegg.brite","prefix_synonyms":["br","brite"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.brite:$1"}],"uri_format":"http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"KEGG.BRITE","uri_format":"https://bioregistry.io/kegg.brite:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"The KEGG BRITE database contains functional hierarchies and binary relationships of biological entities, and includes many types of relationships. KEGG BRITE maps large-scale molecular datasets in genomics, transcriptomics, proteomics, and metabolomics to BRITE functional hierarchies, and allows biological interpretation of higher-level systemic functions.","homepage":"http://www.genome.jp/kegg/brite.html","keywords":["Ontology/Terminology/Nomenclature","Classification"],"name":"Functional hierarchies and binary relationships of biological entities","prefix":"nbdc00115","short_names":["KEGG BRITE"],"status":"active"},"pathguide":null,"tib":null},"kegg.compound":{"prefix":"kegg.compound","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.COMPOUND","edam":"2605","integbio":"nbdc00814","miriam":"kegg.compound","n2t":"kegg.compound","prefixcommons":"kegg.compound"},"synonyms":["KEGG COMPOUND","KEGG.COMPOUND"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22700311","doi":"10.1002/0471250953.bi0112s38","pmc":null,"title":"Using the KEGG database resource","year":2012},{"pubmed":"19327755","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17921532","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17400247","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14505407","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20460463","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22700311","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.","examples":["C12345"],"extras":{"miriam_id":"00000013","namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/ligand.html","name":"KEGG Compound","pattern":"^C\\d+$","prefix":"kegg.compound","status":"active","uri_format":"https://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.","examples":["C12345"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/ligand.html","name":"KEGG LIGAND Database","pattern":"^C\\d+$","prefix":"kegg.compound","uri_format":"https://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"KEGG COMPOUND is a chemical structure database for metabolic compounds and other chemical substances that are relevant to biological systems.","examples":["C12345"],"homepage":"http://www.genome.jp/kegg/compound/","keywords":["small molecule"],"name":"KEGG Compound","pattern":"^C\\d+$","prefix":"kegg.compound","prefix_synonyms":["cpd","kegg.compounds"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.compound:$1"}],"publications":[{"pubmed":"22700311"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?cpd:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.COMPOUND","uri_format":"http://identifiers.org/kegg.compound/$1"},"edam":{"description":"Unique identifier of a chemical compound from the KEGG database.","name":"Compound ID (KEGG)","prefix":"2605"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG COMPOUND is a database of biologically relevant compounds, including chemical structures and associated information for compounds in the KEGG database such as small molecules, biopolymers, and other related substances. The site also has a collection of links to other relevant KEGG resources such as GLYCAN.","homepage":"http://www.genome.jp/kegg/compound/","keywords":["DNA","RNA","Protein","Chemical compound","Interaction/Pathway","Chemical structure"],"name":"Metabolome informatics resource integrating genomics and chemistry","prefix":"nbdc00814","publications":[{"pubmed":"19327755"},{"pubmed":"17921532"},{"pubmed":"17400247"},{"pubmed":"14505407"},{"pubmed":"20460463"}],"short_names":["KEGG COMPOUND"],"status":"active"},"pathguide":null,"tib":null},"kegg.dgroup":{"prefix":"kegg.dgroup","name":"KEGG Drug Group","description":"KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries.","pattern":"^DG\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.genome.jp/kegg/reaction/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"DG00301","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["KEGG_DGROUP","KEGG_DRUG_GROUP"],"keywords":null,"domain":null,"references":["https://github.com/prefixcommons/prefixes/pull/4"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.disease":{"prefix":"kegg.disease","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.DISEASE","integbio":"nbdc00813","miriam":"kegg.disease","n2t":"kegg.disease","prefixcommons":"kegg.disease"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.","examples":["H00076"],"extras":{"miriam_id":"00000475","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/disease/","name":"KEGG Disease","pattern":"^H\\d+$","prefix":"kegg.disease","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.","examples":["H00076"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/disease/","name":"KEGG Disease at Kyoto University Bioinformatics Center","pattern":"^H\\d+$","prefix":"kegg.disease","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"The KEGG DISEASE database is a new collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry is identified by the H number and contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs.","examples":["H00047"],"homepage":"http://www.genome.jp/kegg/disease/","keywords":["classification"],"name":"KEGG Disease","pattern":"^H\\d+$","prefix":"kegg.disease","prefix_synonyms":["ds","kegg.diseases"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.disease:$1"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?ds:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.DISEASE","uri_format":"http://identifiers.org/kegg.disease/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG DISEASE is a database of human diseases with information on perturbed molecular networks. Each disease entry contains a list of known disease genes, environmental factors (carcinogens, pathogens, etc), diagnostic markers and therapeutic drugs with reference information. This database provides maps of molecular networks associated with diseases through links to the KEGG PATHWAY database. Users can search human diseases by names, description, categories, pathways, and known causative genes.","homepage":"http://www.genome.jp/kegg/disease/","keywords":["Genome/Gene","Health/Disease","Drug","Interaction/Pathway"],"name":"Diseases viewed as perturbed states of the molecular system","prefix":"nbdc00813","short_names":["KEGG DISEASE"],"status":"active"},"pathguide":null,"tib":null},"kegg.drug":{"prefix":"kegg.drug","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.DRUG","edam":"2609","integbio":"nbdc00812","miriam":"kegg.drug","n2t":"kegg.drug","prefixcommons":"kegg.drug"},"synonyms":["KEGG DRUG","KEGG.DRUG"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16381885","doi":"10.1093/nar/gkj102","pmc":"PMC1347464","title":"From genomics to chemical genomics: new developments in KEGG","year":2006},{"pubmed":"16381885","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.","examples":["D00123"],"extras":{"miriam_id":"00000025","namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/drug/","name":"KEGG Drug","pattern":"^D\\d+$","prefix":"kegg.drug","status":"active","uri_format":"https://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.","examples":["D00123"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/drug/","name":"KEGG DRUG Database","pattern":"^D\\d+$","prefix":"kegg.drug","uri_format":"https://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"KEGG DRUG is a unified drug information resource that contains chemical structures and/or chemical components of all prescription and OTC drugs in Japan, most prescription drugs in the USA, and many prescription drugs in Europe.","examples":["D00123"],"homepage":"http://www.genome.jp/kegg/drug/","keywords":["small molecule"],"name":"KEGG Drug","pattern":"^D\\d+$","prefix":"kegg.drug","prefix_synonyms":["dr","kegg.drugs"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.drug:$1"}],"publications":[{"pubmed":"16381885"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?dr:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.DRUG","uri_format":"http://identifiers.org/kegg.drug/$1"},"edam":{"description":"Unique identifier of a drug from the KEGG Drug database.","name":"Drug ID (KEGG)","prefix":"2609"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG DRUG is a comprehensive database of drug information about all marketed drugs in Japan, as well as many prescription drugs in USA and Europe. KEGG DRUG is based on chemical structure or component, and each entry contains information about drug targets (pathways), metabolizing enzymes and other interacting molecules. This database also includes crude drugs and TCM (Tradictional Chinese Medicine). Users can check for drug-drug interaction, view structure maps representing the history of drug development and search drugs by generic names, trade names, and components.","homepage":"http://www.genome.jp/kegg/drug/","keywords":["Drug","Interaction/Pathway","Chemical structure"],"name":"Drugs viewed as perturbants to the molecular system","prefix":"nbdc00812","short_names":["KEGG DRUG"],"status":"active"},"pathguide":null,"tib":null},"kegg.environ":{"prefix":"kegg.environ","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"biocontext":"KEGG.ENVIRON","integbio":"nbdc01059","miriam":"kegg.environ","n2t":"kegg.environ"},"synonyms":["KEGG.EDRUG"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.","examples":["ev:E00032"],"extras":{"miriam_id":"00000389","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/drug/environ.html","name":"KEGG Environ","pattern":"^(ev\\:)?E\\d+$","prefix":"kegg.environ","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.","examples":["ev:E00032"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/drug/environ.html","name":"KEGG ENVIRON Database","pattern":"^(ev\\:)?E\\d+$","prefix":"kegg.environ","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.ENVIRON","uri_format":"http://identifiers.org/kegg.environ/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG ENVIRON is a database of crude drugs, essential oils, and medicinal harbs, all of which are mostly natural products of plants. Each entry is associated with the chemical component, efficacy information, and source species information whenever applicable.","homepage":"http://www.genome.jp/kegg/drug/environ.html","keywords":["Health/Disease","Chemical compound","Drug"],"name":"KEGG ENVIRON","prefix":"nbdc01059"},"pathguide":null,"tib":null},"kegg.enzyme":{"prefix":"kegg.enzyme","name":"KEGG Enzyme","description":"KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":"ec","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"go":"KEGG_ENZYME"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.genome.jp/dbget-bin/www_bfind?enzyme","name":"KEGG Enzyme Database","prefix":"KEGG_ENZYME","uri_format":"http://www.genome.jp/dbget-bin/www_bget?ec:$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.genes":{"prefix":"kegg.genes","name":"KEGG gene","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"bsu:BSU01340","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.GENES","biolink":"KEGG.GENES","miriam":"kegg.genes","n2t":"kegg.genes","prefixcommons":"kegg.gene"},"synonyms":null,"keywords":null,"domain":"gene","references":null,"publications":[{"pubmed":"16381885","doi":"10.1093/nar/gkj102","pmc":"PMC1347464","title":"From genomics to chemical genomics: new developments in KEGG","year":2006},{"pubmed":"16381885","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.","examples":["syn:ssr3451"],"extras":{"miriam_id":"00000070","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/genes.html","name":"KEGG Genes","pattern":"^\\w+:[\\w\\d\\.-]*$","prefix":"kegg.genes","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.","examples":["syn:ssr3451"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/genes.html","name":"KEGG GENES Database","pattern":"^\\w+:[\\w\\d\\.-]*$","prefix":"kegg.genes","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"KEGG GENES is a collection of gene catalogs for all complete genomes generated from publicly available resources, mostly NCBI RefSeq. They are subject to SSDB computation and KO assignment (gene annotation) by KOALA tool","examples":["syn:ssr3451"],"homepage":"http://www.genome.jp/kegg/genes.html","keywords":["gene","DNA","protein"],"name":"KEGG Genes","pattern":"^\\w+:[\\w\\d\\.-]*$","prefix":"kegg.gene","prefix_synonyms":["gene","kegg.genes"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.gene:$1"}],"publications":[{"pubmed":"16381885"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?[?species]:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"KEGG.GENES","uri_format":"https://bioregistry.io/kegg.genes:bsu:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.GENES","uri_format":"http://identifiers.org/kegg.genes/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.genome":{"prefix":"kegg.genome","name":"KEGG genome","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"T06648","example_extras":null,"example_decoys":null,"license":"https://www.kegg.jp/kegg/legal.html","version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.owl","download_obo":"https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.obo","download_json":"https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.GENOME","integbio":"nbdc00816","miriam":"kegg.genome","n2t":"kegg.genome","prefixcommons":"kegg.genome"},"synonyms":["kegg_genome","kegg_genomes"],"keywords":["genome"],"domain":"taxonomy","references":null,"publications":[{"pubmed":"22080510","doi":"10.1093/nar/gkr988","pmc":"PMC3245020","title":"KEGG for integration and interpretation of large-scale molecular data sets","year":2011},{"pubmed":"22080510","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG Genome is a collection of organisms whose genomes have been completely sequenced.","examples":["eco"],"extras":{"miriam_id":"00000238","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/catalog/org_list.html","name":"KEGG Genome","pattern":"^(T0\\d+|\\w{3,5})$","prefix":"kegg.genome","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG Genome is a collection of organisms whose genomes have been completely sequenced.","examples":["eco"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/catalog/org_list.html","name":"KEGG Genome Database","pattern":"^(T0\\d+|\\w{3,5})$","prefix":"kegg.genome","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"Complete organism genomes","examples":["T00047"],"homepage":"http://www.genome.jp/kegg/catalog/org_list.html","name":"KEGG Genome","pattern":"^T\\d+$","prefix":"kegg.genome","prefix_synonyms":["gn","kegg.genomes"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.genome:$1"}],"publications":[{"pubmed":"22080510"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?gn:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.GENOME","uri_format":"http://identifiers.org/kegg.genome/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG GENOME is a database of full genome sequence information for multiple species. The database is a collection of references to descriptive genome literature and has links to reaction pathways in each organism, comparative tools, and taxonomy based on KEGG information and provides KEGG pathway information and links to outside resources including primary literature.","homepage":"http://www.genome.jp/kegg/genome.html","keywords":["Genome/Gene","Bibliography/Documents"],"name":"Organisms and ecosystems with genome sequence information","prefix":"nbdc00816","short_names":["KEGG GENOME"],"status":"active"},"pathguide":null,"tib":null},"kegg.glycan":{"prefix":"kegg.glycan","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.GLYCAN","edam":"2613","integbio":"nbdc00533","miriam":"kegg.glycan","n2t":"kegg.glycan","prefixcommons":"kegg.glycan"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16014746","doi":"10.1093/glycob/cwj010","pmc":null,"title":"KEGG as a glycome informatics resource","year":2005},{"pubmed":"16014746","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16362924","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"19327755","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15215393","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16159923","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18546491","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16014746","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.","examples":["G00123"],"extras":{"miriam_id":"00000026","namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/glycan/","name":"KEGG Glycan","pattern":"^G\\d+$","prefix":"kegg.glycan","status":"active","uri_format":"https://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.","examples":["G00123"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/glycan/","name":"KEGG GLYCAN Database","pattern":"^G\\d+$","prefix":"kegg.glycan","uri_format":"https://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"The KEGG GLYCAN structure database is a collection of experimentally determined glycan structures [1]. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.","examples":["G00123"],"homepage":"http://www.genome.jp/kegg/glycan/","keywords":["small molecule"],"name":"KEGG Glycan","pattern":"^G\\d+$","prefix":"kegg.glycan","prefix_synonyms":["gl","kegg.glycans"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.glycan:$1"}],"publications":[{"pubmed":"16014746"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?gl:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.GLYCAN","uri_format":"http://identifiers.org/kegg.glycan/$1"},"edam":{"description":"Unique identifier of a glycan ligand from the KEGG GLYCAN database (a subset of KEGG LIGAND).","name":"KEGG Glycan","prefix":"2613"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG GLYCAN is a database of glycan structures. The database contains structures of glycans involved in KEGG reactions and specifies several parameters of the glycans, as well as collecting links to other glycan-relevant databases. The database is searchable by KEGG G-index ID.","homepage":"http://www.genome.jp/kegg/glycan/","keywords":["RNA","Protein","Carbohydrate","Interaction/Pathway","Chemical structure"],"name":"Glycome informatics resource integrating genomics and chemistry","prefix":"nbdc00533","publications":[{"pubmed":"16014746"},{"pubmed":"16362924"},{"pubmed":"19327755"},{"pubmed":"15215393"},{"pubmed":"16159923"},{"pubmed":"18546491"}],"short_names":["KEGG GLYCAN"],"status":"active"},"pathguide":null,"tib":null},"kegg.ligand":{"prefix":"kegg.ligand","name":"KEGG LIGAND","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"go":"KEGG_LIGAND"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This database has been discontinued by KEGG. It now lives inside the compound database","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.genome.ad.jp/kegg/docs/upd_ligand.html","name":"KEGG LIGAND Database","prefix":"KEGG_LIGAND","uri_format":"http://www.genome.jp/dbget-bin/www_bget?cpd:$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.metagenome":{"prefix":"kegg.metagenome","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.METAGENOME","miriam":"kegg.metagenome","n2t":"kegg.metagenome","prefixcommons":"kegg.metagenome"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22080510","doi":"10.1093/nar/gkr988","pmc":"PMC3245020","title":"KEGG for integration and interpretation of large-scale molecular data sets","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.","examples":["T30002"],"extras":{"miriam_id":"00000239","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/catalog/org_list3.html","name":"KEGG Metagenome","pattern":"^T3\\d+$","prefix":"kegg.metagenome","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.","examples":["T30002"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/catalog/org_list3.html","name":"KEGG Metagenome Database","pattern":"^T3\\d+$","prefix":"kegg.metagenome","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.","examples":["T30002"],"keywords":["genome"],"name":"KEGG Metagenome","pattern":"^T3\\d+$","prefix":"kegg.metagenome","prefix_synonyms":["kegg.metagenomes"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.metagenome:$1"}],"publications":[{"pubmed":"22080510"}],"uri_format":"http://www.genome.jp/kegg-bin/show_organism?org=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.METAGENOME","uri_format":"http://identifiers.org/kegg.metagenome/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.module":{"prefix":"kegg.module","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.MODULE","integbio":"nbdc01428","miriam":"kegg.module","n2t":"kegg.module"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.","examples":["M00002"],"extras":{"miriam_id":"00000474","namespaceEmbeddedInLui":false},"homepage":"http://www.kegg.jp/kegg/module.html","name":"KEGG Module","pattern":"^([a-z]{3,5}_)?M\\d{5}$","prefix":"kegg.module","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.","examples":["M00002"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.kegg.jp/kegg/module.html","name":"KEGG Module at Kyoto University Bioinformatics Center","pattern":"^([a-z]{3,5}_)?M\\d{5}$","prefix":"kegg.module","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.MODULE","uri_format":"http://identifiers.org/kegg.module/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG MODULE is a database of manually defined functional units called KEGG modules identified by M numbers, used for annotation and biological interpretation of sequenced genomes. It contains four types of KEGG modules;\n1) pathway modules - representing tight functional units in KEGG metabolic pathway maps\n2) structural complexes - often forming molecular machineries\n3) functional sets - for other types of essential sets, such as Aminoacyl-tRNA synthases, prokaryotes, etc.\n4) signature modules - as markers of phenotypes, such as EHEC pathogenicity signature, Shiga toxin, etc.","homepage":"http://www.genome.jp/kegg/module.html","keywords":["Metabolite","Phenotype","Interaction/Pathway"],"name":"KEGG MODULE","prefix":"nbdc01428","publications":[{"pubmed":"23384306"}],"status":"active"},"pathguide":null,"tib":null},"kegg.orthology":{"prefix":"kegg.orthology","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.ORTHOLOGY","miriam":"kegg.orthology","n2t":"kegg.orthology","prefixcommons":"kegg.orthology"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.","examples":["K00001"],"extras":{"miriam_id":"00000116","namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/ko.html","name":"KEGG Orthology","pattern":"^K\\d+$","prefix":"kegg.orthology","status":"active","uri_format":"http://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.","examples":["K00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genome.jp/kegg/ko.html","name":"KEGG Orthology Database","pattern":"^K\\d+$","prefix":"kegg.orthology","uri_format":"http://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"The KEGG reference pathway maps and BRITE functional hierarchies are represented in a general way to be applicable to all organisms. KEGG Orthology (KO) is the basis for this representation, consisting of manually defined ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes.","examples":["K00001"],"homepage":"http://www.genome.jp/kegg/ko.html","keywords":["classification","pathway"],"name":"KEGG Orthology","pattern":"^K\\d+$","prefix":"kegg.orthology","prefix_synonyms":["ko"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.orthology:$1"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?ko:$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.ORTHOLOGY","uri_format":"http://identifiers.org/kegg.orthology/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.pathway":{"prefix":"kegg.pathway","name":"KEGG pathway","description":null,"pattern":null,"uri_format":"https://www.kegg.jp/pathway/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"rsk00410","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"kegg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.PATHWAY","biolink":"KEGG.PATHWAY","edam":"2343","go":"KEGG_PATHWAY","miriam":"kegg.pathway","n2t":"kegg.pathway","prefixcommons":"kegg.pathway"},"synonyms":["KEGG-path","KEGG_PATHWAY"],"keywords":null,"domain":"pathway","references":null,"publications":[{"pubmed":"22700311","doi":"10.1002/0471250953.bi0112s38","pmc":null,"title":"Using the KEGG database resource","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.","examples":["hsa00620"],"extras":{"miriam_id":"00000012","namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/pathway.html","name":"KEGG Pathway","pattern":"^\\w{2,4}\\d{5}$","prefix":"kegg.pathway","status":"active"},"n2t":{"description":"KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.","examples":["hsa00620"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/pathway.html","name":"KEGG PATHWAY Database","pattern":"^\\w{2,4}\\d{5}$","prefix":"kegg.pathway"},"prefixcommons":{"description":"KEGG PATHWAY is a collection of manually drawn pathway maps (see new maps, change history, and last updates) representing our knowledge on the molecular interaction and reaction networks","examples":["map00071"],"extras":{"alt_uri_formats":["http://www.genome.jp/kegg-bin/show_pathway?#$1"]},"homepage":"http://www.genome.jp/kegg/pathway.html","keywords":["pathway"],"name":"KEGG Pathway","pattern":"^map\\d+$","prefix":"kegg.pathway","prefix_synonyms":["path","kegg.pathways"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.pathway:$1"}],"publications":[{"pubmed":"22700311"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?map$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.genome.jp/kegg/pathway.html","name":"KEGG Pathways Database","prefix":"KEGG_PATHWAY","uri_format":"http://www.genome.jp/dbget-bin/www_bget?path:$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"KEGG.PATHWAY","uri_format":"https://bioregistry.io/kegg.pathway:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.PATHWAY","uri_format":"http://identifiers.org/kegg.pathway/$1"},"edam":{"description":"Identifier of a pathway from the KEGG pathway database.","name":"Pathway ID (KEGG)","prefix":"2343"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kegg.rclass":{"prefix":"kegg.rclass","name":"KEGG Reaction Class","description":"KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.","pattern":"^RC\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.genome.jp/kegg/reaction/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"RC00001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"KEGG.RCLASS","integbio":"nbdc00860"},"synonyms":["KEGG_RCLASS","KEGG_REACTION_CLASS"],"keywords":null,"domain":null,"references":["https://github.com/prefixcommons/prefixes/pull/2"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"KEGG.RCLASS","uri_format":"https://www.genome.jp/dbget-bin/www_bget?rc:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG RCLASS is a database of enzymatic reactions as organized by the KEGG system and contains an expandable list of all reaction types organized hierarchically. A search function for reaction class is also available. Users can obtain the compounds and enzymes involved for each specified reaction pathway.","homepage":"http://www.genome.jp/kegg-bin/get_htext?br08204.keg","keywords":["RNA","Protein","Interaction/Pathway","Chemical structure"],"name":"KEGG Reaction Class","prefix":"nbdc00860","short_names":["KEGG RCLASS"],"status":"active"},"pathguide":null,"tib":null},"kegg.reaction":{"prefix":"kegg.reaction","name":"KEGG Reaction","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Minoru Kanehisa","orcid":"0000-0001-6123-540X","email":"kanehisa@kuicr.kyoto-u.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"kegg","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KEGG.REACTION","edam":"2608","go":"KEGG_REACTION","integbio":"nbdc00818","miriam":"kegg.reaction","n2t":"kegg.reaction","prefixcommons":"kegg.reaction"},"synonyms":["KEGG_REACTION"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22700311","doi":"10.1002/0471250953.bi0112s38","pmc":null,"title":"Using the KEGG database resource","year":2012},{"pubmed":"14505407","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15600352","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"19477985","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17516640","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20435670","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22700311","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.genome.jp/Fig/kegg128.gif","miriam":{"description":"KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.","examples":["R00100"],"extras":{"miriam_id":"00000014","namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/reaction/","name":"KEGG Reaction","pattern":"^R\\d+$","prefix":"kegg.reaction","status":"active","uri_format":"https://www.kegg.jp/entry/$1"},"n2t":{"description":"KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.","examples":["R00100"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.genome.jp/kegg/reaction/","name":"KEGG Reaction Database","pattern":"^R\\d+$","prefix":"kegg.reaction","uri_format":"https://www.kegg.jp/entry/$1"},"prefixcommons":{"description":"KEGG REACTION contains all reactions taken from KEGG ENZYME and additional reactions taken from the metabolic pathway maps in KEGG PATHWAY.","examples":["R00047"],"homepage":"http://www.genome.jp/kegg/reaction/","keywords":["enzyme","pathway"],"name":"KEGG Reaction","pattern":"^R\\d+$","prefix":"kegg.reaction","prefix_synonyms":["rn","kegg.reactions"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/kegg.reaction:$1"}],"publications":[{"pubmed":"22700311"}],"uri_format":"http://www.genome.jp/dbget-bin/www_bget?rn:$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.genome.jp/kegg/reaction/","name":"KEGG Reaction Database","prefix":"KEGG_REACTION","uri_format":"http://www.genome.jp/dbget-bin/www_bget?rn:$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KEGG.REACTION","uri_format":"http://identifiers.org/kegg.reaction/$1"},"edam":{"description":"Identifier of a biological reaction from the KEGG reactions database.","name":"Reaction ID (KEGG)","prefix":"2608"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"KEGG REACTION is a database of enzymatic reactions. The database contains all KEGG enzyme interactions and KEGG pathway metabolic reactions, including related pathways, and uses IUBMB nomenclature. Users can also find the reaction pathway of individual enzymes.","homepage":"http://www.genome.jp/kegg/reaction/","keywords":["RNA","Protein","Interaction/Pathway","Chemical structure","Classification"],"name":"Knowledge base for predicting biodegradation and biosynthesis","prefix":"nbdc00818","publications":[{"pubmed":"14505407"},{"pubmed":"15600352"},{"pubmed":"19477985"},{"pubmed":"17516640"},{"pubmed":"20435670"}],"short_names":["KEGG REACTION"],"status":"active"},"pathguide":null,"tib":null},"kerafast":{"prefix":"kerafast","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"EJH014","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"Kerafast"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.kerafast.com/","name":"Kerafast cell lines","prefix":"Kerafast","uri_format":"https://www.kerafast.com/Search?SearchTerm="$1""},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kestrelo":{"prefix":"kestrelo","name":"KESTREL Ontology","description":"An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains","pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/kestrelo_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://gitlab.pnnl.gov/kestrel/kestrel_ontology","repository":null,"contact":{"name":"Lindsey N. Anderson","orcid":"0000-0002-8741-7823","email":"lindsey.anderson@pnnl.gov","github":"lnanderson"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.amb":{"prefix":"kim.amb","name":"Allgemeines Metadatenprofil für Bildungsressourcen","description":"A cross-sectoral metadata profile for describing teaching and learning resources, primarily based on [schema.org](https://schema.org) and the Learning Resource Metadata Initiative LRMI, and additionally utilizing elements of the Simple Knowledge Organization System SKOS. A JSON-LD11-compliant data structure is defined in the form of this HTML specification, including a JSON schema against which data can be automatically checked for conformity with the profile.","pattern":"^[a-z]\\w+$","uri_format":"https://dini-ag-kim.github.io/amb/20231019/#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://dini-ag-kim.github.io/amb/20231019/","repository":"https://gitub.com/dini-ag-kim/amb","contact":{"name":"Adrian Pohl","orcid":"0000-0001-9083-7442","email":null,"github":"acka47"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"conditionsofaccess","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning material","learning materials","open educational resource","open educational resources","schema"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Martin Voigt","orcid":"0000-0001-5556-838X","email":"m.voigt@hzdr.de","github":"eilmiv"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1780,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.conditionsofaccess":{"prefix":"kim.conditionsofaccess","name":"Conditions of Access","description":"Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f).","pattern":"^login|no_login$","uri_format":"https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/$1.html","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/index.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"no_login","example_extras":["login"],"example_decoys":["nope"],"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning material","learning materials","open educational resource","open educational resources"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Martin Voigt","orcid":"0000-0001-5556-838X","email":null,"github":"eilmiv"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1782,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.educationlevel":{"prefix":"kim.educationlevel","name":"KIM Education Level","description":"A controlled vocabulary for education levels, such as primary eduation, secondary education, and post-secondary education","pattern":null,"uri_format":"https://w3id.org/kim/educationalLevel/level_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://w3id.org/kim/educationalLevel/","repository":"https://github.com/dini-ag-kim/educationalLevel","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6","example_extras":["B"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/educationalLevel/raw/refs/heads/main/educationalLevel.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"educationallevel"},"synonyms":null,"keywords":["education level","open educational resources"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/dini-ag-kim/educationalLevel/main/educationalLevel.ttl"}],"description":"Eine Wertelliste für die Stufe im Bildungssystem als Lehr-/Lernkontext, für den Lernobjekt ausgewiesen ist.","homepage":"https://github.com/dini-ag-kim/educationalLevel","keywords":["Educational Resources","educational science"],"name":"Educational level","prefix":"educationallevel","tracker":"https://github.com/dini-ag-kim/educationalLevel/issues/","uri_format":"https://w3id.org/kim/educationalLevel/$1"}},"kim.esv":{"prefix":"kim.esv","name":"Educational Sectors Vocabulary","description":"This is a vocabulary for educational sectors as used in the OER World Map (https://oerworldmap.org)","pattern":null,"uri_format":"https://w3id.org/class/sectors/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://w3id.org/kim/educationalLevel/","repository":"https://github.com/dini-ag-kim/vocabs-edu","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"earlyChildhood","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/vocabs-edu/raw/refs/heads/master/sectors.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.hcrt":{"prefix":"kim.hcrt","name":"Higher Education Resource Types","description":"A controlled vocbualry of higher education resource types","pattern":null,"uri_format":"https://w3id.org/kim/hcrt/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/kim/hcrt/$1","providers":null,"homepage":"https://w3id.org/kim/hcrt/scheme.html","repository":"https://github.com/dini-ag-kim/hcrt","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"simulation","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://github.com/dini-ag-kim/hcrt/raw/refs/heads/master/hcrt.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"hcrt"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/dini-ag-kim/hcrt/master/hcrt.ttl"}],"description":"Eine Wertelliste für Typen von Lernressourcen (Learning Resource Type), entstanden im Kontext des Metadatenschemas \\\"LOM for Higher Education OER Repositories\\\" (https://w3id.org/dini-ag-kim/hs-oer-lom-profil/latest/).","homepage":"https://skohub.io/dini-ag-kim/hcrt/heads/master/w3id.org/kim/hcrt/scheme.en.html","keywords":["Educational Resources","educational science"],"name":"Hochschulcampus Ressourcentypen","prefix":"hcrt","tracker":"https://github.com/dini-ag-kim/hcrt/issues","uri_format":"https://w3id.org/kim/hcrt/$1"}},"kim.hochschulfaechersystematik":{"prefix":"kim.hochschulfaechersystematik","name":"German University Subject Classification System","description":"A classification of subjects in Hochschule (universities of applied sciences)","pattern":null,"uri_format":"https://w3id.org/kim/hochschulfaechersystematik/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/kim/hochschulfaechersystematik/$1","providers":null,"homepage":"https://w3id.org/kim/hochschulfaechersystematik/scheme","repository":"https://github.com/dini-ag-kim/hochschulfaechersystematik","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"n2","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/hochschulfaechersystematik/raw/refs/heads/master/hochschulfaechersystematik.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"hfs"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/dini-ag-kim/hochschulfaechersystematik/master/hochschulfaechersystematik.ttl"}],"description":"Diese Hochschulfächersystematik basiert auf der Destatis-Systematik der Fächergruppen, Studienbereiche und Studienfächer (http://bartoc.org/node/18919) und wird gepflegt von der OER-Metadatengruppe der DINI-AG KIM. Die Systematik ist Bestandteil der Spezifikationen LOM for Higher Education OER Repositories und LRMI-Profil (Entwurf).","homepage":"https://bartoc.org/en/node/18919","keywords":["Educational Resources","educational science"],"name":"Hochschulfächersystematik","prefix":"hfs","uri_format":"https://w3id.org/kim/hochschulfaechersystematik/$1"}},"kim.license":{"prefix":"kim.license","name":"KIM License","description":"A vocabulary describing licenses for data and code","pattern":null,"uri_format":"https://w3id.org/kim/license/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/kim/license/$1","providers":null,"homepage":"https://w3id.org/kim/license/","repository":"https://github.com/dini-ag-kim/license","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"nonCommercial","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/license/raw/refs/heads/main/license.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["license"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.lp":{"prefix":"kim.lp","name":"Lehrplan Ontology","description":"This ontology is a formal representation that captures the fundamental concepts and their relationships to one another in the field of curriculum design and implementation of the German school system.","pattern":"^\\d{7}$","uri_format":"https://w3id.org/lehrplan/ontology/LP_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/dini-ag-kim/school-curriculum-pg","repository":"https://github.com/dini-ag-kim/school-curriculum-pg","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000141","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/dini-ag-kim/school-curriculum-pg/raw/refs/heads/main/lp.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.schularten":{"prefix":"kim.schularten","name":"KIM German School Types","description":"This SKOS vocabulary describes types of primary and secondary schools in Germany, such as Grundschule, Gymnasium, and Realschule. This does not include post-secondary education such as universities or hochschulen.","pattern":null,"uri_format":"https://w3id.org/kim/schularten/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/kim/schularten/$1","providers":null,"homepage":"https://github.com/dini-ag-kim/schularten","repository":"https://github.com/dini-ag-kim/schularten","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"s02","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/schularten/raw/refs/heads/main/schularten.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["primary school type","school type","seconary school type"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1626,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kim.schulfaecher":{"prefix":"kim.schulfaecher","name":"KIM School Subjects","description":"A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art.","pattern":null,"uri_format":"http://w3id.org/kim/schulfaecher/$1","uri_format_resolvable":null,"rdf_uri_format":"http://w3id.org/kim/schulfaecher/$1","providers":null,"homepage":"https://github.com/dini-ag-kim/schulfaecher","repository":"https://github.com/dini-ag-kim/schulfaecher","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"s1000","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/dini-ag-kim/schulfaecher/raw/refs/heads/main/schulfaecher.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["discipline","school subject","subject"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1626,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kit.mtxx":{"prefix":"kit.mtxx","name":null,"description":null,"pattern":null,"uri_format":"https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"002_xxx_xxx-a228d7e065dc45b4b5ab48876aab7228-vp","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"kitmtxx"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://gitlab.com/linked-tribological-data/vocabulary-materials-tribology-lab-at-kit/-/raw/main/SKOS_Vocabulary_Materials%20Tribology%20Lab%20at%20KIT.ttl"}],"description":"Objects of this class contain a self-bound collection of mass bearing particles.","homepage":"https://gitlab.com/linked-tribological-data/vocabulary-materials-tribology-lab-at-kit","keywords":["NFDI4ING","material science"],"name":"Vocabulary of Materials Tribology Lab at KIT","prefix":"kitmtxx","uri_format":"https://purls.helmholtz-metadaten.de/vp/kitmtxx-41732562-vp$1"}},"knapsack":{"prefix":"knapsack","name":"KNApSAcK","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"KNAPSACK","integbio":"nbdc00545","miriam":"knapsack","n2t":"knapsack","wikidata":"P2064"},"synonyms":["KNApSAcK"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated.","examples":["C00000001"],"extras":{"miriam_id":"00000271","namespaceEmbeddedInLui":false},"homepage":"http://www.knapsackfamily.com/KNApSAcK/","name":"KNApSAcK","pattern":"^C\\d{8}$","prefix":"knapsack","status":"active","uri_format":"http://www.knapsackfamily.com/knapsack_core/information.php?word=$1"},"n2t":{"description":"Knapsack provides information on metabolites and the taxonomic class with which they are associated.","examples":["C00000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://kanaya.aist-nara.ac.jp/KNApSAcK/","name":"KnapSack at Nara Institute","pattern":"^C\\d{8}","prefix":"knapsack","uri_format":"http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=$1"},"prefixcommons":null,"wikidata":{"description":"identifier in the KNApSAcK Core System","examples":["C00000001","C00035015"],"name":"KNApSAcK ID","pattern":"^C\\d{8}$","prefix":"P2064","uri_format":"https://www.knapsackfamily.com/knapsack_core/information.php?sname=C_ID&word=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"KNAPSACK","uri_format":"http://identifiers.org/knapsack/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"This database provides information on how species and metabolites relate to each other.\nSearches can be done on the Web by entering the organism's name or that of the metabolite or its molecular weight or formula.\nThe site also offers the option to download the database and work offline.","homepage":"http://www.knapsackfamily.com/KNApSAcK/","keywords":["Metabolite","Chemical compound","Bibliography/Documents","Chemical structure"],"name":"A Comprehensive Species-Metabolite Relationship Database","prefix":"nbdc00545","publications":[{"pubmed":"22123792"}],"short_names":["KNApSAcK"],"status":"active"},"pathguide":null,"tib":null},"kpio":{"prefix":"kpio","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Goal","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"kpi"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://bimerr.iot.linkeddata.es/def/key-performance-indicator/ontology.ttl"}],"description":"The Key Performance Indicator module aims to model the metrics defined at the beginning of building renovation activities to monitor the conformance with typical requirements related to energy efficient buildings.","homepage":"http://bimerr.iot.linkeddata.es/def/key-performance-indicator","keywords":["FID BAUdigital","Digital Planning and Construction","NFDI4ING","civil engineering","computer science"],"name":"Key Performance Indicator ontology","prefix":"kpi","uri_format":"http://bimerr.iot.linkeddata.es/def/key-performance-indicator#$1"}},"kupo":{"prefix":"kupo","name":"Kidney and Urinary Pathway Ontology","description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.kupkb.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001009","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-2-S2-S7"],"publications":null,"appears_in":["cl"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Website is down, now it redirects to something else that is not related","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"kyinno":{"prefix":"kyinno","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"KC-0979","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"KYinno"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.kyinno.com/","name":"KYinno cell lines","prefix":"KYinno","uri_format":"https://www.kyinno.com/?s=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"labo":{"prefix":"labo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/LABO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000124","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LABO","bioportal":"LABO","obofoundry":"labo","ols":"labo","ontobee":"LABO","wikidata.entity":"Q81661673"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.5281/zenodo.6522019","pmc":null,"title":"LABO: An ontology for laboratory test prescription and reporting","year":2019},{"pubmed":null,"doi":"10.5281/zenodo.6522019","pmc":null,"title":"LABO: An Ontology for Laboratory Test Prescription and Reporting","year":null},{"pubmed":null,"doi":"10.5281/zenodo.6522019","pmc":null,"title":"LABO: An Ontology for Laboratory Test Prescription and Reporting","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/labo.owl"}],"contact":{"email":"paul.fabry@usherbrooke.ca","github":"pfabry","name":"Paul Fabry","orcid":"0000-0002-3336-2476"},"depends_on":["iao","obi","ogms","omiabis","omrse","opmi"],"description":"LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.","domain":"information","homepage":"https://github.com/OpenLHS/LABO","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"clinical LABoratory Ontology","preferred_prefix":"LABO","prefix":"labo","publications":[{"doi":"10.5281/zenodo.6522019","title":"LABO: An Ontology for Laboratory Test Prescription and Reporting"}],"repository":"https://github.com/OpenLHS/LABO","status":"active","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"paul.fabry@usherbrooke.ca","name":"Paul Fabry"},"description":"LABO is an ontology of informational entities describing laboratory tests prescriptions and reporting documents. LABO is a component of a core ontological model, along with the ontology of drug prescriptions PDRO, that aims to enable interoperability between various clinical data sources in the context of a Learning Health System.","homepage":"https://github.com/OpenLHS/LABO","name":"clinical LABoratory Ontology","prefix":"LABO"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/labo.owl"}],"description":"LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.","extras":{"version.iri":"http://purl.obolibrary.org/obo/labo/2021-06-08/labo.owl"},"homepage":"https://github.com/OpenLHS/LABO","name":"clinical LABoratory Ontology","prefix":"labo","tracker":"https://github.com/OpenLHS/LABO/issues","version":"2021-06-08"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/LABO/3/labo.owl"}],"description":"LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.","homepage":"https://github.com/OpenLHS/LABO","name":"clinical LABoratory Ontology","prefix":"LABO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"clinical LABoratory Ontology","prefix":"LABO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"langual":{"prefix":"langual","name":"Langua aLimentaria Thesaurus","description":"Langual stands for \"langua alimentaria\" or \"language of food\". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases","pattern":"^B\\d+$","uri_format":"https://www.langual.org/langual_thesaurus.asp?termid=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.langual.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"B2067","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":507,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lattes":{"prefix":"lattes","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://lattes.cnpq.br","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1007"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"number for the Lattes Platform entry on the person or group. Relationship between entry and subject must be supported by a source.","examples":["0061106995455595","9975840620597737"],"name":"Lattes Platform number","pattern":"^\\d{16}$","prefix":"P1007","uri_format":"https://lattes.cnpq.br/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lbctr":{"prefix":"lbctr","name":"Lebanon Clinical Trials Registry","description":"The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)","pattern":"^LBCTR\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://lbctr.moph.gov.lb/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"LBCTR2023015204","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://lbctr.moph.gov.lb/Trials/Details/5204"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lbo":{"prefix":"lbo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_$1","uri_format_resolvable":null,"rdf_uri_format":"http://purl.obolibrary.org/obo/LBO_$1","providers":null,"homepage":"https://www.animalgenome.org/bioinfo/projects/lbo/","repository":"https://github.com/AnimalGenome/livestock-breed-ontology","contact":{"name":"Carissa Park","orcid":"0000-0002-2346-5201","email":"caripark@iastate.edu","github":"caripark"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000487","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl","download_obo":"https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LBO","agroportal":"LBO","bioportal":"LBO","fairsharing":"FAIRsharing.309v57"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jekoltes@iastate.edu","name":"James Koltes"},"description":"The Livestock Breed Ontology is a controlled vocabulary for buffalo, cattle, chicken, goat, horse, pig, and sheep breeds.","license":{"name":"CC-BY-4.0"},"name":"Livestock Breed Ontology","prefix":"LBO","version":"2026-04-01"},"ecoportal":null,"agroportal":{"contact":{"email":"jreecy@iastate.edu","name":"Jim Reecy"},"description":"A vocabulary for buffalo, cattle, chicken, goat, horse, pig, and sheep breeds., The Livestock Breed Ontology is a controlled vocabulary for buffalo","extras":{"example_uri":"http://purl.obolibrary.org/obo/LBO_0000700"},"license":{"name":"CC-BY-4.0"},"name":"Livestock Breed Ontology","prefix":"LBO","repository":"https://github.com/AnimalGenome/livestock-breed-ontology","version":"2026-04-01"},"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/LBO/9/lbo.obo"}],"description":"A vocabulary for buffalo, cattle, chicken, goat, horse, pig, and sheep breeds.","name":"Livestock Breed Ontology","prefix":"LBO","version":"2.2"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Livestock Breed Ontology (LBO) is a controlled vocabulary for the unambiguous description of breeds. Its utility include proper identification of inherited variation sources in genetics/genomic studies. ","homepage":"https://www.animalgenome.org/bioinfo/projects/lbo/","keywords":["Animal Breeding","Animal Husbandry","Genetics","Genomics"],"license":{"name":"CC BY-NC 4.0","url":"https://creativecommons.org/licenses/by-nc/4.0/"},"name":"Livestock Breed Ontology","prefix":"FAIRsharing.309v57","repository":"https://github.com/AnimalGenome/livestock-breed-ontology","short_names":["LBO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lccn":{"prefix":"lccn","name":"Library of Congress Control Number","description":"LCCN Permalinks are persistent URLs for bibliographic records in the LC Catalog and authority records in LC Authorities. These links are constructed using the record's LCCN (or Library of Congress Control Number), an identifier assigned by the Library of Congress to bibliographic and authority records. LCCN Permalinks are also available for citation records in the Handbook for Latin American Studies (HLAS). [from homepage]","pattern":"^\\d+$","uri_format":"https://lccn.loc.gov/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://lccn.loc.gov","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2011488555","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1310,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lcsh":{"prefix":"lcsh","name":"Library of Congress Subject Headings","description":"Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)","pattern":"^\\w{1,2}\\d{8,10}$","uri_format":"https://id.loc.gov/authorities/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"subject","name":"LOC Subject","description":"a subspace","homepage":"https://id.loc.gov/authorities/subjects.html","uri_format":"http://id.loc.gov/authorities/subjects/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://id.loc.gov/authorities","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"nb2018006591","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"454","fairsharing":"FAIRsharing.d31795","wikidata":"P244","wikidata.entity":"Q17109002"},"synonyms":["lcnaf","lcnafid"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"Library of Congress name authority (persons, families, corporate bodies, events, places, works and expressions) and subject authority identifier [Format: 1-2 specific letters followed by 8-10 digits (see regex). For manifestations, use P1144]","examples":["n79022935","n81082970","n81092084","n84023326","sh2008005914","sh2020006558","sh85037527"],"homepage":"https://id.loc.gov","name":"Library of Congress authority ID","pattern":"^(cf|ct|gf|n|nb|nr|no|ns|sh|sj)([4-9][0-9]|00|01|20[0-2][0-9])[0-9]{6}$","prefix":"P244","short_names":["LC authority ID","LCAuth"],"uri_format":"https://id.loc.gov/authorities/$1","uri_format_rdf":"http://id.loc.gov/authorities/names/$1","xrefs":{"wikidata":"Q620946"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Library of Congress Subject Headings (LCSH) provides catalog headings for materials held at the Library of Congress. Libraries throughout the United States use LCSH to provide subject access to their collections. LCSH is also used internationally, often in translation. The LCSH online resource includes all Library of Congress Subject Headings, free-floating subdivisions (topical and form), Genre/Form headings, Children's (AC) headings, and validation strings for which authority records have been created.","homepage":"https://id.loc.gov/authorities/subjects.html","keywords":["Subject Agnostic"],"license":{"name":"https://www.loc.gov/legal","url":"https://www.loc.gov/legal/"},"name":"Library of Congress Subject Headings","prefix":"FAIRsharing.d31795","short_names":["LCSH"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"LCSH in this service includes all Library of Congress Subject Headings, free-floating subdivisions (topical and form), Genre/Form headings, Children's (AC) headings, and validation strings for which authority records have been created. The content includes a few name headings (personal and corporate), such as William Shakespeare, Jesus Christ, and Harvard University, and geographic headings that are added to LCSH as they are needed to establish subdivisions, provide a pattern for subdivision practice, or provide reference structure for other terms. This content is expanded beyond the print issue of LCSH (the 'red books') with inclusion of validation strings. *Validation strings: Some authority records are for headings that have been built by adding subdivisions. These records are the result of an ongoing project to programmatically create authority records for valid subject strings from subject heading strings found in bibliographic records. The authority records for these subject strings were created so the entire string could be machine-validated. The strings do not have broader, narrower, or related terms. Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. By virtue of cooperative cataloging other libraries around the United States also use LCSH to provide subject access to their collections. In addition LCSH is used internationally, often in translation.","homepage":"http://id.loc.gov/authorities/subjects.html","license":{"spdx":"CC0-1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"Library of Congress Subject Headings","prefix":"454","short_names":["LCSH"],"uri_format":"http://id.loc.gov/authorities/subjects/$1","xrefs":{"wikidata":"Q1823134"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lcsh.genreforms":{"prefix":"lcsh.genreforms","name":"Library of Congress Subject Headings - Genre Forms","description":"A subset of Library of Congress (LOC) subject headings","pattern":null,"uri_format":"http://id.loc.gov/authorities/genreForms/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://id.loc.gov/authorities","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"gf2018026088","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"lcsh","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ldp":{"prefix":"ldp","name":"Linked Data Platform Vocabulary","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Resource","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"ldp","zazuko":"ldp"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"A set of best practices and simple approach for a read-write Linked Data architecture, based on HTTP access to web resources that describe their state using the RDF data model.","homepage":"http://www.w3.org/TR/ldp/","keywords":["API"],"name":"Linked Data Platform","prefix":"ldp","uri_format":"http://www.w3.org/ns/ldp#$1"},"zazuko":{"prefix":"ldp","uri_format":"http://www.w3.org/ns/ldp#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"leadscope":{"prefix":"leadscope","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P2083"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a chemical compound in leadscope.com","examples":["LS-114771","LS-2365","LS-53442"],"homepage":"http://www.leadscope.com","name":"Leadscope ID","pattern":"^LS-\\d{1,6}$","prefix":"P2083","uri_format":"https://www.leadscope.com/structure_search_results.php?ss_string=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"leafsnap":{"prefix":"leafsnap","name":"Leafsnap","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P10538"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide","examples":["Amelanchier laevis","Crataegus crus-galli"],"homepage":"http://leafsnap.com/","name":"Leafsnap ID","prefix":"P10538","uri_format":"http://leafsnap.com/species/$1/"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lei":{"prefix":"lei","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"lei","n2t":"lei"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.","examples":["HWUPKR0MPOU8FGXBT394"],"extras":{"miriam_id":"00000686","namespaceEmbeddedInLui":false},"homepage":"https://www.gleif.org/","name":"Global LEI Index","pattern":"^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$","prefix":"lei","status":"active","uri_format":"https://www.gleif.org/lei/$1"},"n2t":{"description":"Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.","examples":["HWUPKR0MPOU8FGXBT394"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.gleif.org/","name":"Global LEI Index","pattern":"^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$","prefix":"lei","uri_format":"https://www.gleif.org/lei/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lepao":{"prefix":"lepao","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/LEPAO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000005","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LEPAO","bioportal":"LEPAO","obofoundry":"lepao","ols":"lepao","ontobee":"LEPAO","wikidata.entity":"Q113012667"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/lepao.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/lepao.obo"}],"contact":{"email":"lagonzalezmo@unal.edu.co","github":"luis-gonzalez-m","name":"Luis A. Gonzalez-Montana","orcid":"0000-0002-9136-9932"},"depends_on":["aism","bfo","bspo","caro","pato","ro","uberon"],"description":"The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research).","domain":"anatomy and development","homepage":"https://github.com/insect-morphology/lepao","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Lepidoptera Anatomy Ontology","preferred_prefix":"LEPAO","prefix":"lepao","repository":"https://github.com/insect-morphology/lepao","status":"active"},"bioportal":{"contact":{"email":"lagonzalezmo@unal.edu.co","name":"Luis A. Gonzalez-Montana"},"description":"The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research).","homepage":"https://github.com/insect-morphology/lepao","name":"Lepidoptera Anatomy Ontology","prefix":"LEPAO","version":"2023-02-18"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/lepao.owl"}],"description":"The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.","extras":{"version.iri":"http://purl.obolibrary.org/obo/lepao/releases/2023-02-18/lepao.owl"},"homepage":"https://github.com/insect-morphology/lepao","name":"Lepidoptera Anatomy Ontology","prefix":"lepao","tracker":"https://github.com/insect-morphology/lepao/issues","version":"2023-02-18"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/LEPAO/2/lepao.owl"}],"description":"The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research).","homepage":"https://github.com/insect-morphology/lepao","name":"Lepidoptera Anatomy Ontology","prefix":"LEPAO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Lepidoptera Anatomy Ontology","prefix":"LEPAO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lexvo.ontology":{"prefix":"lexvo.ontology","name":"Lexvo Ontology","description":"The data model underlying lexvo","pattern":null,"uri_format":"http://lexvo.org/ontology#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://lexvo.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Language","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"http://lexvo.org/ontology","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"lvont","zazuko":"lvont"},"synonyms":["lvont"],"keywords":null,"domain":"data model","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"An ontology for natural language terms description, including scripts, languages and meanings. The Lexvo.org ontology is still under development and may not be able to address all needs. Please also consider using the Lingvoj Ontology and the GOLD ontology, whereever appropriate.","homepage":"http://www.lexvo.org/","keywords":["Vocabularies"],"name":"Lexvo.org Ontology","prefix":"lvont","uri_format":"http://lexvo.org/ontology#$1"},"zazuko":{"prefix":"lvont","uri_format":"http://lexvo.org/ontology#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lgai.cede":{"prefix":"lgai.cede","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"lgai.cede"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).","examples":["LGCEDe-S-000002244"],"extras":{"miriam_id":"00000867","namespaceEmbeddedInLui":false},"homepage":"https://www.lgresearch.ai","name":"LG Chemical Entity Detection Dataset (LGCEDe)","pattern":"^LGCEDe-S-\\d{9}$","prefix":"lgai.cede","status":"active","uri_format":"https://s3.us-east-2.amazonaws.com/lg.cede/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lgic":{"prefix":"lgic","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"biocontext":"LGIC","miriam":"lgic","n2t":"lgic","prefixcommons":"lgicdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"9847222","doi":"10.1093/nar/27.1.340","pmc":"PMC148177","title":"The Ligand Gated Ion Channel Database","year":1999}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Website is gone","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.","examples":["5HT3Arano"],"extras":{"miriam_id":"00000087","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php","name":"Ligand-Gated Ion Channel database","pattern":"^\\w+$","prefix":"lgic","status":"deprecated","uri_format":"https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"},"n2t":{"description":"The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.","examples":["5HT3Arano"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php","name":"Ligand-Gated Ion Channel database at EBI","pattern":"^\\w+$","prefix":"lgic","uri_format":"https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"},"prefixcommons":{"description":"The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.","examples":["5HT3Arano"],"homepage":"http://www.ebi.ac.uk/compneur-srv/LGICdb/","keywords":["gene","protein","sequence"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"Ligand-Gated Ion Channel database","pattern":"^\\w+$","prefix":"lgicdb","prefix_synonyms":["lgic"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/lgicdb:$1"}],"publications":[{"pubmed":"9847222"}],"uri_format":"http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LGIC","uri_format":"http://identifiers.org/lgic/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"licebase":{"prefix":"licebase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LICEBASE","integbio":"nbdc02217","miriam":"licebase","n2t":"licebase","re3data":"r3d100013547"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.","examples":["EMLSAT00000003403"],"extras":{"miriam_id":"00000628","namespaceEmbeddedInLui":false},"homepage":"https://licebase.org","name":"LiceBase","pattern":"^[A-Za-z0-9\\-\\/]+$","prefix":"licebase","status":"active","uri_format":"https://licebase.org/?q=$1"},"n2t":{"description":"Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.","examples":["EMLSAT00000003403"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://licebase.org","name":"LiceBase","pattern":"^[A-Za-z0-9\\-\\/]+$","prefix":"licebase","uri_format":"https://licebase.org/?q=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LICEBASE","uri_format":"http://identifiers.org/licebase/$1"},"edam":null,"re3data":{"description":"LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data.","homepage":"https://licebase.org/","name":"LiceBase","prefix":"r3d100013547","xrefs":{"doi":"10.17616/R31NJMY3"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"LiceBase is a genomics database for sea lice (Lepeophtheirus salmonis and Caligus spp.), which are major pathogens affecting the global salmon farming industry. The database is designed to help researchers, industry professionals, and other interested parties access and share information about these parasites, with the goal of developing new treatment methods and tools to ensure a sustainable salmon farming industry. LiceBase provides genome annotation reports, genome browsing, RNA interference (RNAi) experiment browsing, BLAST search, and in-situ images. The database homepage posts news updates and recent publications related to sea lice and salmonid species.","homepage":"https://licebase.org/","keywords":["Genome/Gene","RNA","Organism","Sequence","Image/Movie"],"name":"LiceBase","prefix":"nbdc02217","status":"active","xrefs":{"fairsharing":"FAIRsharing.c7w81a"}},"pathguide":null,"tib":null},"lifestylefactors":{"prefix":"lifestylefactors","name":null,"description":null,"pattern":null,"uri_format":"http://purl.obolibrary.org/obo/LFID_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000015","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bioportal":"LSFO","ols":"lifestylefactors"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"lars.juhl.jensen@cpr.ku.dk","name":"Lars Juhl Jensen"},"description":"In this ontology, we defined nine distinct categories that encompass various aspects of lifestyle factors (LSFs), creating a unified Lifestyle Factors Ontology (LSFO) across these categories. Within the context of lifestyle, we have identified nine categories that can collectively describe all LSFs, namely: \t1-Nutrition, a category that covers different branches such as dietary habits, food groups, food processing and preparation, macronutrients, and micronutrients, among others. \t2-Socioeconomic factors, which includes social and economic conditions such as income, wealth, education and socioeconomic status. \t3-Environmental exposures, includes exposure to various environmental factors, such as air pollution, water quality, and workplace hazards, that can impact an individual’s health. \t4-Substance use, covers concepts such as smoking, as well as illicit drug use. \t5-Physical activities, includes regular exercise and physically demanding activities like leisure time, occupational, and household physical activities. \t6-Non-physical leisure time activities, describes any activity an individual might engage in during their free time that is not a physical activity. \t7-Personal care products and cosmetic procedures, covers activities related to hygiene, use of cosmetic and cleaning products as well as invasive procedures that people undergo to improve their appearance, such as cosmetic surgery. \t8-Sleep, covers sleep quality, stages, and habits. \t9-Mental health practices, includes the behaviors and habits related to maintaining good mental health and emotional well-being such as meditation, and psychotherapy. This ontology is released under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.","name":"Lifestyle Factor Ontology","prefix":"LSFO","publications":[{"url":"https://www.biorxiv.org/content/10.1101/2024.06.13.598816v2"}],"version":"1.01"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/EsmaeilNourani/Lifestyle-factors-ontology/main/LSFO/owl/LSFO.owl"}],"contact":{"email":""},"description":"In this ontology, we defined nine distinct categories that encompass various aspects of lifestyle factors (LSFs), creating a unified Lifestyle Factors Ontology (LSFO) across these categories. Within the context of lifestyle, we have identified nine categories that can collectively describe all LSFs, namely: 1-Nutrition, a category that covers different branches such as dietary habits, food groups, food processing and preparation, macronutrients, and micronutrients, among others. 2-Socioeconomic factors, which includes social and economic conditions such as income, wealth, education and socioeconomic status. 3-Environmental exposures, includes exposure to various environmental factors, such as air pollution, water quality, and workplace hazards, that can impact an individual’s health. 4-Substance use, covers concepts such as smoking, as well as illicit drug use. 5-Physical activities, includes regular exercise and physically demanding activities like leisure time, occupational, and household physical activities. 6-Non-physical leisure time activities, describes any activity an individual might engage in during their free time that is not a physical activity. 7-Personal care products and cosmetic procedures, covers activities related to hygiene, use of cosmetic and cleaning products as well as invasive procedures that people undergo to improve their appearance, such as cosmetic surgery. 8-Sleep, covers sleep quality, stages, and habits. 9-Mental health practices, includes the behaviors and habits related to maintaining good mental health and emotional well-being such as meditation, and psychotherapy.","homepage":"https://bioportal.bioontology.org/ontologies/LSFO","name":"Lifestyle Factors Ontology","prefix":"lifestylefactors"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ligandbook":{"prefix":"ligandbook","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"ligandbook","n2t":"ligandbook"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.","examples":["785"],"extras":{"miriam_id":"00000681","namespaceEmbeddedInLui":false},"homepage":"https://ligandbook.org/","name":"LigandBook","pattern":"^[0-9]+$","prefix":"ligandbook","status":"active","uri_format":"https://ligandbook.org/package/$1"},"n2t":{"description":"Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.","examples":["785"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://ligandbook.org/","name":"LigandBook","pattern":"^[0-9]+$","prefix":"ligandbook","uri_format":"https://ligandbook.org/package/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ligandbox":{"prefix":"ligandbox","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LIGANDBOX","integbio":"nbdc00551","miriam":"ligandbox","n2t":"ligandbox","prefixcommons":"ligandbox"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.","examples":["D00001"],"extras":{"miriam_id":"00000477","namespaceEmbeddedInLui":false},"homepage":"http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en","name":"LigandBox","pattern":"^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$","prefix":"ligandbox","status":"active","uri_format":"http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1"},"n2t":{"description":"LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.","examples":["D00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/index.cgi?LANG=en","name":"LigandBox at","pattern":"^D\\d{5}","prefix":"ligandbox","uri_format":"http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=$1"},"prefixcommons":{"description":"LigandBox(LIGANDs Data Base Open and eXtensible) is a 'ready-to-dock' database of small chemical compounds, for virtual drug screening on computer docking studies. It contains the 3D molecular structures including full hydrogen atoms with atomic charges for each compounds.","examples":["HTS1710-00235605"],"homepage":"http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en","keywords":["protein","structure","small molecule"],"name":"LigandBox","prefix":"ligandbox","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ligandbox:$1"}],"publications":[{"pubmed":"27493549"}],"uri_format":"http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LIGANDBOX","uri_format":"http://identifiers.org/ligandbox/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"LigandBox is a database of small chemical compounds for drug screening on computer docking studies. This database contains 3D molecular structures produced by calculation based on 2D structural data of chemicals those are provided by companies and KEGG databases. Users can search chemical compounds by structural information, physical quantity, as well as keywords.","homepage":"http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en","keywords":["Chemical compound","3D structure"],"name":"LIGANDs Data Base Open and eXtensible","prefix":"nbdc00551","publications":[{"pubmed":"27493549"}],"short_names":["LigandBox"],"status":"active"},"pathguide":null,"tib":null},"ligandexpo":{"prefix":"ligandexpo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LIGANDEXPO","integbio":"nbdc01864","miriam":"ligandexpo","n2t":"ligandexpo","pathguide":"154","prefixcommons":"ligandexpo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"15059838","doi":"10.1093/bioinformatics/bth214","pmc":null,"title":"Ligand Depot: a data warehouse for ligands bound to macromolecules","year":2004},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15059838","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.","examples":["ABC"],"extras":{"miriam_id":"00000062","namespaceEmbeddedInLui":false},"homepage":"http://ligand-depot.rutgers.edu/index.html","name":"Ligand Expo","pattern":"^(\\w){3}$","prefix":"ligandexpo","providers":[{"code":"","description":"Ligand Expo at Rutgers","homepage":"http://ligand-expo.rcsb.org/","name":"Ligand Expo at Rutgers","uri_format":"http://ligand-expo.rcsb.org/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"}],"status":"active","uri_format":"http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"},"n2t":{"description":"Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.","examples":["ABC"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://ligand-expo.rcsb.org/","name":"Ligand Expo at Rutgers","pattern":"^(\\w){3}$","prefix":"ligandexpo","uri_format":"http://ligand-expo.rcsb.org/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"},"prefixcommons":{"description":"Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.","examples":["ABC"],"homepage":"http://ligand-depot.rutgers.edu/","keywords":["interaction","structure","protein","chemical","nucleic acid"],"license":{"name":"http://ligand-depot.rutgers.edu/acknowledgements.html","url":"http://ligand-depot.rutgers.edu/acknowledgements.html"},"name":"Ligand Expo","pattern":"^(\\w){3}$","prefix":"ligandexpo","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ligandexpo:$1"}],"publications":[{"pubmed":"15059838"}],"uri_format":"http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LIGANDEXPO","uri_format":"http://identifiers.org/ligandexpo/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. Tools are provided to search the PDB dictionary for chemical components, to identify structure entries containing particular small molecules, and to download the 3D structures of the small molecule components in the PDB entry.","homepage":"http://ligand-depot.rutgers.edu/","keywords":["DNA","Protein","Chemical compound","Sequence","Interaction/Pathway","3D structure"],"name":"Ligand Expo","prefix":"nbdc01864","publications":[{"pubmed":"15059838"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.2ma4gq"}},"pathguide":{"homepage":"http://ligand-depot.rutgers.edu/","name":"Ligand Expo","prefix":"154","short_names":["Ligand Expo"]},"tib":null},"ligea":{"prefix":"ligea","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CCLE_867","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"LiGeA"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This might just be a provider for CCLE","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Polymorphism and mutation databases","homepage":"http://hpc-bioinformatics.cineca.it/fusion/main","name":"Cancer cell LInes GEne fusions portAl","prefix":"LiGeA","uri_format":"http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"limore":{"prefix":"limore","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Li7","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"LIMORE"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://www.picb.ac.cn/limore/home","name":"Liver Cancer Model Repository","prefix":"LIMORE","uri_format":"https://www.picb.ac.cn/limore/cellLines/single?para=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lincs.cell":{"prefix":"lincs.cell","name":null,"description":null,"pattern":"^(LCL|LDC|ES|LSC|LPC)-\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LINCS.CELL","cellosaurus":"LINCS_LDP","miriam":"lincs.cell","n2t":"lincs.cell"},"synonyms":["LINCS_LDP"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.","examples":["LCL-2085"],"extras":{"miriam_id":"00000544","namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/cells/","name":"LINCS Cell","pattern":"^(LCL-\\d+)|(LDC-\\d+)|(ES-\\d+)|(LSC-\\d+)|(LPC-\\d+)$","prefix":"lincs.cell","status":"active","uri_format":"http://lincsportal.ccs.miami.edu/cells/#/view/$1"},"n2t":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.","examples":["LCL-2085"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/cells/","name":"LINCS Portal","pattern":"(^LCL-\\d+$)|(^LDC-\\d+$)|(^ES-\\d+$)|(^LSC-\\d+$)|(^LPC-\\d+$)","prefix":"lincs.cell","uri_format":"http://lincsportal.ccs.miami.edu/cells/#/view/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"http://lincsportal.ccs.miami.edu/cells/","name":"LINCS Data Portal","prefix":"LINCS_LDP","uri_format":"http://lincsportal.ccs.miami.edu/cells/#/view/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LINCS.CELL","uri_format":"http://identifiers.org/lincs.cell/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lincs.data":{"prefix":"lincs.data","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LINCS.DATA","miriam":"lincs.data","n2t":"lincs.data"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).","examples":["LDS-1110"],"extras":{"miriam_id":"00000588","namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/datasets/","name":"LINCS Data","pattern":"^[EL]D[SG]-\\d+$","prefix":"lincs.data","providers":[{"code":"omicsdi","description":"Lincs through OmicsDI","homepage":"https://www.omicsdi.org/","name":"Lincs through OmicsDI","uri_format":"https://www.omicsdi.org/dataset/lincs/$1"}],"status":"active","uri_format":"http://lincsportal.ccs.miami.edu/datasets/#/view/$1"},"n2t":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).","examples":["LDS-1110"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/datasets/","name":"LINCS Data at University of Miami","pattern":"^[EL]D[SG]-\\d+$","prefix":"lincs.data","uri_format":"http://lincsportal.ccs.miami.edu/datasets/#/view/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LINCS.DATA","uri_format":"http://identifiers.org/lincs.data/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lincs.protein":{"prefix":"lincs.protein","name":null,"description":null,"pattern":null,"uri_format":"https://lincs.hms.harvard.edu/db/proteins/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LINCS.PROTEIN","miriam":"lincs.protein","n2t":"lincs.protein"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.","examples":["200282"],"extras":{"miriam_id":"00000545","namespaceEmbeddedInLui":false},"homepage":"http://lincs.hms.harvard.edu/db/proteins/","name":"LINCS Protein","pattern":"^\\d+$","prefix":"lincs.protein","status":"active","uri_format":"http://lincs.hms.harvard.edu/db/proteins/$1/"},"n2t":{"description":"The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.","examples":["200282"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lincs.hms.harvard.edu/db/proteins/","name":"LINCS Protein at Harvard Medical School","pattern":"^\\d+$","prefix":"lincs.protein","uri_format":"http://lincs.hms.harvard.edu/db/proteins/$1/"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LINCS.PROTEIN","uri_format":"http://identifiers.org/lincs.protein/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lincs.smallmolecule":{"prefix":"lincs.smallmolecule","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LINCS.SMALLMOLECULE","miriam":"lincs.smallmolecule","n2t":"lincs.smallmolecule"},"synonyms":["lincs"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).","examples":["LSM-6306"],"extras":{"miriam_id":"00000546","namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/SmallMolecules/","name":"LINCS Small Molecule","pattern":"^LSM-\\d+$","prefix":"lincs.smallmolecule","status":"active","uri_format":"http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1"},"n2t":{"description":"The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).","examples":["LSM-6306"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lincsportal.ccs.miami.edu/SmallMolecules/","name":"LINCS Portal","pattern":"^LSM-\\d+$","prefix":"lincs.smallmolecule","uri_format":"http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LINCS.SMALLMOLECULE","uri_format":"http://identifiers.org/lincs.smallmolecule/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"linguist":{"prefix":"linguist","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/github/linguist","repository":"https://github.com/github/linguist","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"linguist"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Registry of programming languages for the Linguist program for detecting and highlighting programming languages.","examples":["Python"],"extras":{"miriam_id":"00000849","namespaceEmbeddedInLui":false},"homepage":"https://github.com/","name":"Linguist","pattern":"^[a-zA-Z0-9 +#'*]+$","prefix":"linguist","status":"active","uri_format":"https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"linguist.gold":{"prefix":"linguist.gold","name":"Genderal Ontology for Linguistic Description","description":null,"pattern":null,"uri_format":"https://lambdamusic.github.io/ontospy-examples/gold-2010owl/class-gold$1.html","uri_format_resolvable":null,"rdf_uri_format":"http://purl.org/linguistics/gold/$1","providers":null,"homepage":"https://linguistlist.org/gold/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Term","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource has been deprecated and was last released in 2010. The homepage links to a zip folder that includes an OWL artifact, but it doesn't follow any typical standards. The ontology browser is not perfect, it only works for classes.","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1310,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"linkedin":{"prefix":"linkedin","name":null,"description":null,"pattern":"^[\\w0-9\\-&_'’\\.]+$","uri_format":"https://www.linkedin.com/in/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.linkedin.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P6634"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a person, on the LinkedIn website","examples":["deborahlehr","filipposfragkogiannis","hélène-gasnault-a2543562","ursula-von-der-leyen"],"name":"LinkedIn personal profile ID","pattern":"^[\\p{L}0-9\\-&_”“'’\\.]+$","prefix":"P6634","short_names":["LinkedIn"],"uri_format":"https://www.linkedin.com/in/$1/","xrefs":{"wikidata":"Q116153251"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"linkml":{"prefix":"linkml","name":"LinkML","description":"Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks.","pattern":null,"uri_format":"https://w3id.org/linkml/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://linkml.io/linkml-model/docs/SchemaDefinition/","repository":null,"contact":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SchemaDefinition","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"linkml"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.5281/zenodo.5598314","pmc":null,"title":"linkml/linkml-model: v1.5.2","year":2023}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Closes #508","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"linkml","mastodon":null,"github_request_issue":512,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"linkml","uri_format":"https://w3id.org/linkml/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lipidbank":{"prefix":"lipidbank","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Etsuko Yasugi","orcid":"0000-0003-1898-4426","email":"e-yasugi@umin.ac.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LIPIDBANK","edam":"2665","integbio":"nbdc00126","miriam":"lipidbank","n2t":"lipidbank","prefixcommons":"lipidbank"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"12058481","doi":null,"pmc":null,"title":"[LIPIDBANK for Web, the newly developed lipid database]","year":2002},{"pubmed":"12058481","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12058481","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.","examples":["BBA0001"],"extras":{"miriam_id":"00000115","namespaceEmbeddedInLui":false},"homepage":"http://lipidbank.jp/index.html","name":"LipidBank","pattern":"^\\w+\\d+$","prefix":"lipidbank","status":"deprecated","uri_format":"https://lipidbank.jp/data/$1.cdx"},"n2t":{"description":"LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.","examples":["BBA0001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lipidbank.jp/index.html","name":"LipidBank the Lipid database","pattern":"^\\w+\\d+$","prefix":"lipidbank","uri_format":"http://lipidbank.jp/cgi-bin/detail.cgi?id=$1"},"prefixcommons":{"description":"LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.","examples":["BBA0001"],"homepage":"http://lipidbank.jp/index.html","keywords":["lipid","molecule","structure"],"name":"LipidBank","pattern":"^\\w+\\d+$","prefix":"lipidbank","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/lipidbank:$1"}],"publications":[{"pubmed":"12058481"}],"uri_format":"http://lipidbank.jp/cgi-bin/detail.cgi?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LIPIDBANK","uri_format":"http://identifiers.org/lipidbank/$1"},"edam":{"description":"Identifier of an entry from the LipidBank database.","name":"LipidBank","prefix":"2665"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"Lipidbank is the official database of the Japanese Conference on the Biochemistry of Lipids (JCBL). Natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins can be freely searched. It also provides more than 6000 unique molecular structures (ChemDraw cdx format, MDL MOL format) with their lipid names (common name, IUPAC), spectral information (mass, UV, IR, NMR and others), and links to published information.","homepage":"http://lipidbank.jp/","keywords":["Lipid","Image/Movie","Chemical structure"],"name":"LipidBank","prefix":"nbdc00126","publications":[{"pubmed":"12058481"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000581"}},"pathguide":null,"tib":null},"lipidmaps":{"prefix":"lipidmaps","name":"LIPID MAPS","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Edward A Dennis","orcid":"0000-0003-3738-3140","email":"edennis@ucsd.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LIPIDMAPS","cheminf":"000564","edam":"2625","integbio":"nbdc02669","miriam":"lipidmaps","n2t":"lipidmaps","ols":"lipidmaps","pathguide":"503","prefixcommons":"lipidmaps","re3data":"r3d100012315","togoid":"Lipidmaps","wikidata":"P2063"},"synonyms":["LIPID MAPS","LIPID_MAPS_class","LIPID_MAPS_instance"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19098281","doi":"10.1194/jlr.r800095-jlr200","pmc":"PMC2674711","title":"Update of the LIPID MAPS comprehensive classification system for lipids","year":2008},{"pubmed":"17584797","doi":"10.1093/nar/gkm324","pmc":"PMC1933166","title":"LIPID MAPS online tools for lipid research","year":2007},{"pubmed":"17098933","doi":"10.1093/nar/gkl838","pmc":"PMC1669719","title":"LMSD: LIPID MAPS structure database","year":2006},{"pubmed":"15722563","doi":"10.1194/jlr.e400004-jlr200","pmc":null,"title":"A comprehensive classification system for lipids","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.lipidmaps.org/assets/images/logos/lipid_maps_transparent_sm.png","miriam":{"description":"The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.","examples":["LMPR0102010012"],"extras":{"miriam_id":"00000052","namespaceEmbeddedInLui":false},"homepage":"http://www.lipidmaps.org","name":"LIPID MAPS","pattern":"^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$","prefix":"lipidmaps","providers":[{"code":"scholia","description":"Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.","homepage":"https://scholia.toolforge.org/","name":"Scholia","uri_format":"https://scholia.toolforge.org/lipidmaps/$1"}],"status":"active","uri_format":"http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"},"n2t":{"description":"The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.","examples":["LMPR0102010012"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.lipidmaps.org","name":"Department of Bioengineering and the San Diego Supercomputer Center","pattern":"^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$","prefix":"lipidmaps","uri_format":"http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"},"prefixcommons":{"description":"The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.","examples":["LMPR0102010012"],"homepage":"http://www.lipidmaps.org","keywords":["lipid","structure","taxonomy"],"license":{"name":"http://www.lipidmaps.org/about/terms_of_use.html","url":"http://www.lipidmaps.org/about/terms_of_use.html"},"name":"LIPID MAPS","pattern":"^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$","prefix":"lipidmaps","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/lipidmaps:$1"}],"publications":[{"pubmed":"17098933"},{"pubmed":"15722563"}],"uri_format":"http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$1"},"wikidata":{"description":"identifier used in the LIPID MAPS database for lipids","examples":["LMFA07010511","LMPR0102010003"],"name":"LIPID MAPS ID","pattern":"^LM[A-Z][A-Z]\\d+([A-Z][A-Z]?\\d+)?$","prefix":"P2063","uri_format":"https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessClassSearch&LMID=$1","xrefs":{"miriam":"lipidmaps","wikidata":"Q20968889"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"homepage":"https://lipidmaps.org","name":"LIPID MAPS","prefix":"lipidmaps","uri_format":"https://www.lipidmaps.org/rdf/$1"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":{"description":"Identifier used by the LipidMaps database, http://www.lipidmaps.org/.","name":"LipidMaps","prefix":"000564"},"fairsharing":null,"biocontext":{"prefix":"LIPIDMAPS","uri_format":"http://identifiers.org/lipidmaps/$1"},"edam":{"description":"Identifier of an entry from the LIPID MAPS database.","name":"LIPID MAPS","prefix":"2625"},"re3data":{"description":"Tthe Lipidomics Gateway - a free, comprehensive website for researchers interested in lipid biology, provided by the LIPID MAPS (Lipid Metabolites and Pathways Strategy) Consortium. The LIPID MAPS Lipidomics Gateway provides a rich collection of information and resources to help you stay abreast of the latest developments in this rapidly expanding field. LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional effort created in 2003 to identify and quantitate, using a systems biology approach and sophisticated mass spectrometers, all of the major — and many minor — lipid species in mammalian cells, as well as to quantitate the changes in these species in response to perturbation.\nThe ultimate goal of our research is to better understand lipid metabolism and the active role lipids play in diabetes, stroke, cancer, arthritis, Alzheimer's and other lipid-based diseases in order to facilitate development of more effective treatments.\nSince our inception, we have made great strides toward defining the \"lipidome\" (an inventory of the thousands of individual lipid molecular species) in the mouse macrophage. We have also worked to make lipid analysis easier and more accessible for the broader scientific community and to advance a robust research infrastructure for the international research community. We share new lipidomics findings and methods, hold annual meetings open to all interested investigators, and are exploring joint efforts to extend the use of these powerful new methods to new applications","homepage":"https://www.lipidmaps.org/","name":"LIPID MAPS","prefix":"r3d100012315","prefix_synonyms":["LIPID MAPS Lipidomics Gateway","LIPID Metabolites And Pathways Strategy"],"xrefs":{"doi":"10.17616/R3WW7G","nif":"0000-00368","omics":"02529"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"examples":["LMST01060010","LMFA01020229","LMFA03020019","LMGP01010915","LMSP03010080","LMFA07070005","LMFA06000216","LMGP01030144","LMFA01170119","LMGP02011194"],"keywords":["Lipid"],"name":"LIPID MAPS","pattern":"^(?LM(?:FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}(?:[0-9a-zA-Z]{4,6})?)$","prefix":"Lipidmaps","uri_format":"http://identifiers.org/lipidmaps/$1"},"integbio":{"description":"LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003. We strive to produce new open-access databases, informatics tools and lipidomics-focused training activities will be generated and made publicly available for researchers studying lipids in health and disease. LIPID MAPS® is currently funded by a multi-institutional grant from Wellcome, held jointly by Cardiff University, University of California San Diego, the Babraham Institute Cambridge, and Swansea University, as well as an Innovation Study funded by ELIXIR. This current phase will see that LIPID MAPS® is maintained and importantly, further developed in line with the global demand and development of lipidomics. LIPID MAPS® has an internationally recognized classification system and the largest curated lipid structure database in the world.","homepage":"https://www.lipidmaps.org/","keywords":["Lipid","Ontology/Terminology/Nomenclature","Chemical structure","Interaction/Pathway","Classification"],"name":"LIPID MAPS","prefix":"nbdc02669","publications":[{"doi":"10.1093/nar/gkad896","pubmed":"37855672"},{"doi":"10.1093/nar/gkm324","pubmed":"17584797"},{"doi":"10.1093/nar/gkl838","pubmed":"17098933"},{"doi":"10.1093/nar/gkad896","pubmed":"37855672"},{"doi":"10.12688/f1000research.28022.2","pubmed":"33564392"},{"doi":"10.1093/nar/gkj122","pubmed":"16381922"},{"doi":" 10.1101/2020.04.09.033894","pubmed":""}],"status":"active"},"pathguide":{"homepage":"http://www.lipidmaps.org/","name":"LIPID Metabolites and Pathways Strategy","prefix":"503","short_names":["LIPID MAPS"]},"tib":null},"lipro":{"prefix":"lipro","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LIPRO","biocontext":"LIPRO","bioportal":"LIPRO","fairsharing":"FAIRsharing.vxyt0f","obofoundry":"lipro","wikidata.entity":"Q114677891"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"bakerc@unb.ca","name":"Christopher Baker","orcid":"0000-0003-4004-6479"},"description":"An ontology representation of the LIPIDMAPS nomenclature classification.","domain":"chemistry and biochemistry","name":"Lipid Ontology","preferred_prefix":"LIPRO","prefix":"lipro","status":"inactive"},"bioportal":{"contact":{"email":"bakerc@unb.ca","name":"Christipher Baker"},"description":"Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. The ontology describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups.","name":"Lipid Ontology","prefix":"LIPRO","version":"See Remote Site"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/LIPRO/4/lipro.owl"}],"description":"Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. The ontology describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups.","name":"Lipid Ontology","prefix":"LIPRO","version":"See Remote Site"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. The ontology describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL).","homepage":"https://bioportal.bioontology.org/ontologies/LIPRO","keywords":["Life Science","Biochemistry","lipid"],"name":"Lipid Ontology","prefix":"FAIRsharing.vxyt0f","publications":[{"doi":"10.1186/1471-2105-9-s1-s5","pubmed":"18315858","title":"Towards ontology-driven navigation of the lipid bibliosphere","url":"http://doi.org/10.1186/1471-2105-9-S1-S5","year":2008}],"short_names":["LiPrO"]},"biocontext":{"prefix":"LIPRO","uri_format":"http://purl.obolibrary.org/obo/LIPRO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"listdb.onto":{"prefix":"listdb.onto","name":"ListDB Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://gitlab.com/listdb","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"C0000000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"listdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"\n This is an ontology draft for the description of metadata of traffic observations, in particular video recordings of road traffic. The traffic observations are e.g. used to design test scenarios for the effectiveness assessment of automated driving systems. \n\nThe ontology draft resulted from an exchange of the Chair of Automobile Engineering at TU Dresden (https://tu-dresden.de/bu/verkehr/iad/kft?set_language=en) with representatives of NFDI4Ing (Community Cluster 4.4, Archetype Golo, Base Services S3) and FID move in NFDI4Ing's Special Interest Group \"Metadata and Ontologies\". An essential part of that meeting was the presentation of the reseaerch data management approach at the Chair of Automobile Engineering, in particular its tooling, its metadata approach and its workflow.\n\nTraffic observations are managed with ListDB, a solution combined of a SharePoint instance and a virtual machine for data servicing . An accompanying Codebook defines relevant metadata that should be provided for each road traffic observation. ListDB is currently used internally within TU Dresden, but is intentended to be hosted publicly until spring 2023. \n\nThe ontology draft is, in fact, based on the Codebook (v. 1.0.0.) and an attempt to make a machine-readable document out of it, applying standards from the Semantic Web Stack (RDF(S) and OWL). The draft is constantly being developed further in this context.\n ","extras":{"version.iri":"https://w3id.org/listdb/onto/0.0.1"},"homepage":"https://w3id.org/listdb/onto","keywords":["FID move","NFDI4ING","traffic engineering"],"name":"ListDB Ontology 0.0.1 (Draft)","prefix":"listdb","tracker":"https://gitlab.com/listdb/onto/-/issues","uri_format":"https://w3id.org/listdb/onto#$1"}},"lncbook":{"prefix":"lncbook","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc02541","miriam":"lncbook"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"LncBook accommodates a high-quality collection of human lncRNA genes and transcripts, and incorporates their abundant annotations at different omics levels, thereby enabling users to decipher functional signatures of lncRNAs in human diseases and different biological contexts.\n\n","examples":["HSALNG0006197"],"extras":{"miriam_id":"00001109","namespaceEmbeddedInLui":false},"homepage":"https://ngdc.cncb.ac.cn/?lang=en","name":"LncBook","pattern":"^HSALNG\\d{7}$","prefix":"lncbook","status":"active","uri_format":"https://ngdc.cncb.ac.cn/lncbook/gene?geneid=$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration, functional annotation and disease association. It integrates multi-omics data from expression, methylation, genome variation and lncRNA-miRNA interaction. A core component of LncBook is the community-curated LncRNAWiki portal, which a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs).","homepage":"https://ngdc.cncb.ac.cn/lncbook/","keywords":["Genome/Gene","Genetic variation","RNA","Health/Disease","Sequence","Expression","Interaction/Pathway"],"name":"LncBook","prefix":"nbdc02541","publications":[{"doi":"10.1093/nar/gky960","pubmed":"30329098"}],"status":"active","xrefs":{"fairsharing":"biodbcore-001262/"}},"pathguide":null,"tib":null},"lncipedia":{"prefix":"lncipedia","name":"LNCipedia","description":"A comprehensive compendium of human long non-coding RNAs","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://lncipedia.org","repository":null,"contact":{"name":"Pieter Mestdagh","orcid":"0000-0001-7821-9684","email":"pieter.mestdagh@ugent.be","github":"OncoRNALab"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SNHG3","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"lncipedia"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25829178","doi":"10.1093/nar/gkv295","pmc":"PMC4417186","title":"An update on LNCipedia: a database for annotated human lncRNA sequences","year":2015},{"pubmed":"25378313","doi":"10.1093/nar/gku1060","pmc":"PMC4383901","title":"An update on LNCipedia: a database for annotated human lncRNA sequences","year":2014},{"pubmed":"23042674","doi":"10.1093/nar/gks915","pmc":"PMC3531107","title":"LNCipedia: a database for annotated human lncRNA transcript sequences and structures","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"A comprehensive compendium of human long non-coding RNAs","examples":["A1BG-AS1"],"homepage":"https://lncipedia.org/","keywords":["RNA","lncrna"],"name":"LNCipedia","prefix":"lncipedia","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/lncipedia:$1"}],"publications":[{"pubmed":"30371849"}],"uri_format":"http://www.lncrnadb.org/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loc.fdd":{"prefix":"loc.fdd","name":"Library of Congress Format Description Document","description":"The digital content format descriptions accessible here provide specific information about individual formats and their characteristics. Each description provides moderately detailed information and citations. Planned for inclusion are a wide variety of formats: file formats, file-format classes, bitstream structures and encodings, and the mechanisms used to compress files or bitstreams. Inclusion of a description for a format does not imply that the format is preferred or acceptable for Library of Congress collections. [from homepage]","pattern":"^fdd\\d+$","uri_format":"https://www.loc.gov/preservation/digital/formats/fdd/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"xml","name":"LOC FDD XML","description":"LOC FDD XML","homepage":"https://www.loc.gov/preservation/digital/formats/fddXML/fddXMLreadme.txt","uri_format":"https://www.loc.gov/preservation/digital/formats/fddXML/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://www.loc.gov/preservation/digital/formats/fdd/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"fdd000613","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["file format","media type"],"domain":"semantic web","references":["https://www.loc.gov/preservation/digital/formats/fddXML/fddXMLreadme.txt"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1725,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loc.relator":{"prefix":"loc.relator","name":"Library of Congress Relator","description":"Relator terms and their associated codes designate the relationship between an agent and a bibliographic resource.","pattern":null,"uri_format":"https://id.loc.gov/vocabulary/relators/$1","uri_format_resolvable":null,"rdf_uri_format":"http://id.loc.gov/vocabulary/relators/$1","providers":null,"homepage":"http://id.loc.gov/vocabulary/relators","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"arc","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://id.loc.gov/download/vocabulary/relators.skosrdf.ttl.gz","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loc.resourcetype":{"prefix":"loc.resourcetype","name":"Library of Congress Resource Types Scheme","description":"A controlled vocabulary of media resources, such as audio, cartographic, manuscript, multimedia, etc.","pattern":null,"uri_format":"http://id.loc.gov/vocabulary/resourceTypes/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://id.loc.gov/vocabulary/resourceTypes.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"dig","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://id.loc.gov/vocabulary/resourceTypes.skos.rdf","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["data classification"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Petra C. Steiner","orcid":"0000-0001-8997-2620","email":null,"github":"petrasteiner"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"locn":{"prefix":"locn","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Address","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"locn","zazuko":"locn"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The ISA Programme Location Core Vocabulary provides a minimum set of classes and properties for describing any place in terms of its name, address or geometry. The vocabulary is specifically designed to aid the publication of data that is interoperable with EU INSPIRE Directive.","homepage":"http://www.w3.org/ns/locn","keywords":["Geography","Geometry"],"name":"ISA Programme Location Core Vocabulary","prefix":"locn","uri_format":"http://www.w3.org/ns/locn#$1"},"zazuko":{"prefix":"locn","uri_format":"http://www.w3.org/ns/locn#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"log":{"prefix":"log","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"dtlit","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"log","zazuko":"log"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"Une ontologie \"historique\" utilisée par l'outil en ligne de commande cwm, au temps des balbutiements du web sémantique (~ 2000 - 2003 ?)","homepage":"http://www.w3.org/2000/10/swap/doc/CwmBuiltins","keywords":["RDF"],"name":"SWAP Logic Ontology","prefix":"log","uri_format":"http://www.w3.org/2000/10/swap/log#$1"},"zazuko":{"prefix":"log","uri_format":"http://www.w3.org/2000/10/swap/log#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loggerhead":{"prefix":"loggerhead","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"LOGGERHEAD","obofoundry":"loggerhead","wikidata.entity":"Q114677892"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"peteremidford@yahoo.com","name":"Peter Midford","orcid":"0000-0001-6512-3296"},"domain":"organisms","homepage":"http://www.mesquiteproject.org/ontology/Loggerhead/index.html","name":"Loggerhead nesting","preferred_prefix":"LOGGERHEAD","prefix":"loggerhead","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LOGGERHEAD","uri_format":"http://purl.obolibrary.org/obo/LOGGERHEAD_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loinc":{"prefix":"loinc","name":"Logical Observation Identifiers Names and Codes","description":"The international standard for identifying health measurements, observations, and documents.","pattern":"^(\\d|\\w)+-\\d$","uri_format":"https://loinc.org/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://loinc.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"LL379-9","example_extras":null,"example_decoys":null,"license":"https://uts.nlm.nih.gov/uts/assets/LicenseAgreement.pdf","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LOINC","bartoc":"1897","biolink":"LOINC","bioportal":"LOINC","fairsharing":"FAIRsharing.2mk2zb","hl7":"2.16.840.1.113883.6.1","prefixcommons":"loinc","wikidata":"P4338","wikidata.entity":"Q502480"},"synonyms":["LNC"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25656513","doi":"10.1093/jamia/ocu012","pmc":"PMC5566197","title":"Supporting interoperability of genetic data with LOINC","year":2015},{"pubmed":"22285984","doi":"10.1016/j.jbi.2012.01.005","pmc":"PMC3376691","title":"Enabling international adoption of LOINC through translation","year":2012},{"pubmed":"9749897","doi":"10.1016/s1386-5056(98)00089-6","pmc":null,"title":"Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC)","year":1998},{"pubmed":"9749897","doi":"10.1016/s1386-5056(98)00089-6","pmc":null,"title":"Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC)","year":1998},{"pubmed":"22285984","doi":"10.1016/j.jbi.2012.01.005","pmc":null,"title":"Enabling international adoption of LOINC through translation","year":2012},{"pubmed":"25656513","doi":"10.1093/jamia/ocu012","pmc":null,"title":"Supporting interoperability of genetic data with LOINC","year":2015}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Logical Observation Identifier Names and Codes (LOINC);Version 2.26;January 2, 2009","examples":["34067-9"],"homepage":"http://loinc.org/downloads","name":"Logical Observation Identifier Names and Codes","prefix":"loinc","prefix_synonyms":["lnc"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/loinc:$1"}],"uri_format":"https://loinc.org/$1","uri_format_rdf":"https://loinc.org/$1","xrefs":{"bioportal":"1350"}},"wikidata":{"description":"identifier for medical observations, measurements, and documents in the Regenstrief Institute's Logical Observation Identifiers Names and Codes (LOINC), a database of internationalized medical terminology","examples":["41995-2","69723-5"],"homepage":"https://loinc.org/","name":"LOINC ID","pattern":"^\\d+-\\d$","prefix":"P4338","uri_format":"https://loinc.org/$1","uri_format_rdf":"http://loinc.org/rdf/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"loinc@regenstrief.org","name":"LOINC Support"},"description":"Logical Observation Identifier Names and Codes (LOINC) provides formal names and standardized codes for laboratory and other clinical observations. The data cover laboratory terminology, vital signs, hemodynamics intake/output, EKG, obstetric ultrasound, cardiac echo, urologic, imaging, gastroendoscopic procedures, pulmonary ventilator management, and selected survey instruments.","homepage":"http://loinc.org/downloads","name":"Logical Observation Identifier Names and Codes","prefix":"LOINC","publications":[{"url":"http://loinc.org/downloads"}],"version":"281"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"Logical Observation Identifier Names and Codes (LOINC)","homepage":"http://loinc.org/downloads","name":"Logical Observation Identifier Names and Codes","prefix":"LOINC","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"LOINC","uri_format":"http://loinc.org/rdf/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"LOINC is a common language (set of identifiers, names, and codes) for clinical and laboratory observations. LOINC is a catalog of measurements, including laboratory tests, clinical measures like vital signs and anthropomorphic measures, standardized survey instruments, and more. LOINC enables the exchange and aggregation of clinical results for care delivery, outcomes management, and research by providing a set of universal codes and structured names to unambiguously identify things you can measure or observe.","homepage":"https://loinc.org/","keywords":["Life Science","Preclinical Studies","Biomedical Science","Genetic Polymorphism","assay","phenotype","diagnosis","genetic disorder"],"license":{"url":"https://uts.nlm.nih.gov/license.html"},"name":"Logical Observation Identifier Names and Codes","prefix":"FAIRsharing.2mk2zb","publications":[{"doi":"10.1016/s1386-5056(98)00089-6","pubmed":"9749897","title":"Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC)","url":"http://doi.org/10.1016/s1386-5056(98)00089-6","year":1998},{"doi":"10.1016/j.jbi.2012.01.005","pubmed":"22285984","title":"Enabling international adoption of LOINC through translation","url":"http://doi.org/10.1016/j.jbi.2012.01.005","year":2012},{"doi":"10.1093/jamia/ocu012","pubmed":"25656513","title":"Supporting interoperability of genetic data with LOINC","url":"http://doi.org/10.1093/jamia/ocu012","year":2015}],"short_names":["LOINC"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"Logical Observation Identifiers Names and Codes (LOINC®) provides a set of universal codes and names for identifying laboratory and other clinical observations. One of the main goals of LOINC is to facilitate the exchange and pooling of results for clinical care, outcomes management, and research. LOINC was initiated by Regenstrief Institute research scientists who continue to develop it with the collaboration of the LOINC Committee. The LOINC table, LOINC codes, and LOINC panels and forms file are copyright © 1995-2010, Regenstrief Institute, Inc. and the LOINC Committee and available at no cost (http://loinc.org) under the license at http://loinc.org/terms-of-use.The laboratory portion of the LOINC database contains the usual clinical laboratory categories of chemistry, hematology, serology, microbiology (including parasitology and virology), toxicology; as well as categories for drugs and the cell counts, antibiotic susceptibilities, and more. The clinical portion of the LOINC database includes entries for vital signs, hemodynamics, intake/output, EKG, obstetric ultrasound, cardiac echo, radiology report titles, pulmonary ventilator management, document and section titles, patient assessment instruments (e.g. Glascow Coma Score, PHQ-9 depression scale, CMS-required patient assessment instruments), and other clinical observations.LOINC may be accessed at http://loinc.org","extras":{"organization":"Regenstrief Institute"},"homepage":"http://www.regenstrief.org","name":"Logical Observation Identifier Names and Codes","preferred_prefix":"loinc","prefix":"2.16.840.1.113883.6.1","status":"active"},"bartoc":{"description":"LOINC was initiated in 1994 by Clem McDonald, an investigator at the Regenstrief Institute, which is an internationally respected non-profit medical research organization associated with Indiana University. Regenstrief organized the LOINC committee to develop a common terminology for laboratory and clinical observations because there was a growing trend to send clinical data electronically from laboratories and other data producers to hospitals, physician's offices, and payers who use the data for clinical care and management purposes.\n\nAt the time, and still today, most laboratories and clinical services use HL7 to send their results electronically from their reporting systems to their care systems. However, the tests in these messages are identified by means of their internal, idiosyncratic code values. As a result, receiving care system cannot fully \"understand\" and properly file the results they receive unless they either adopt the producer's test codes (which is impossible if they receive results from multiple sources), or invest in the work to map each result producer's code system to their internal code system.\n\nHere's the problem that LOINC solves: LOINC provides universal codes and names that provide the global lingua franca for identifying tests and observations.","homepage":"http://loinc.org/","name":"LOINC","prefix":"1897","xrefs":{"wikidata":"Q502480"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lonza":{"prefix":"lonza","name":"Lonza","description":"Contains information about cells and data sheets related to transfection.","pattern":"^\\d+$","uri_format":"https://knowledge.lonza.com/cell?id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://knowledge.lonza.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"968","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"Lonza"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://knowledge.lonza.com","name":"Lonza Cell and Transfection Database","prefix":"Lonza","uri_format":"https://knowledge.lonza.com/cell?id=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loop":{"prefix":"loop","name":null,"description":null,"pattern":null,"uri_format":"https://loop.frontiersin.org/people/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P2798"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a person, in the Loop database of researcher impact","examples":["1859","2187","82461"],"homepage":"https://loop.frontiersin.org/","name":"Loop ID","pattern":"^[1-9]\\d*$","prefix":"P2798","uri_format":"https://loop.frontiersin.org/people/$1/overview"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"loqate":{"prefix":"loqate","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Maya Schuldiner","orcid":"0000-0001-9947-115X","email":"maya.schuldiner@weizmann.ac.il","github":"Maya-Schuldiner-lab"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"loqate"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24150937","doi":"10.1093/nar/gkt933","pmc":"PMC3965041","title":"LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast","year":2013}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library","examples":["1001"],"homepage":"http://www.weizmann.ac.il/molgen/loqate/","license":{"name":"http://www.weizmann.ac.il/molgen/loqate/downloads","url":"http://www.weizmann.ac.il/molgen/loqate/downloads"},"name":"The localization and quantitation atlas of the yeast proteome","pattern":"^\\d+$","prefix":"loqate","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/loqate:$1"}],"publications":[{"pubmed":"24150937"}],"uri_format":"http://www.weizmann.ac.il/molgen/loqate/gene/view/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lotus":{"prefix":"lotus","name":"LOTUS Initiative for Open Natural Products Research","description":"LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.","pattern":"^LTS\\d{7}$","uri_format":"https://lotus.naturalproducts.net/compound/lotus_id/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://lotus.naturalproducts.net","repository":null,"contact":{"name":"Adriano Rutz","orcid":"0000-0003-0443-9902","email":"adriano.rutz@ik.me","github":"adafede"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"LTS0004651","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata.entity":"Q104225190"},"synonyms":null,"keywords":["chemistry","drugs","metabolites"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"IDs are actually leading to the structural part of LOTUS only, which might change in the future. Will adapt the regexp in case.","contributor":{"name":"Adriano Rutz","orcid":"0000-0003-0443-9902","email":"adriano.rutz@ik.me","github":"adafede"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":222,"logo":"https://upload.wikimedia.org/wikipedia/commons/6/64/Lotus_initiative_logo.svg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lpt":{"prefix":"lpt","name":"Livestock Product Trait Ontology","description":"The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.","pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/LPT_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/AnimalGenome/livestock-product-trait-ontology","repository":"https://github.com/AnimalGenome/livestock-product-trait-ontology","contact":{"name":"Carissa Park","orcid":"0000-0002-2346-5201","email":"caripark@iastate.edu","github":"caripark"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000156","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl","download_obo":"https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"LPT","agroportal":"LPT","biocontext":"LPT","bioportal":"LPT","fairsharing":"FAIRsharing.g78mbm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jekoltes@iastate.edu","name":"James Koltes"},"description":"The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit. , The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.","homepage":"https://www.animalgenome.org/bioinfo/projects/lpt/","license":{"name":"CC-BY-4.0"},"name":"Livestock Product Trait Ontology","prefix":"LPT","version":"2026-04-01"},"ecoportal":null,"agroportal":{"contact":{"email":"jreecy@iastate.edu","name":"Jim Reecy"},"description":"The Livestock Product Trait (LPT) Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit., The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.","extras":{"example_uri":"http://purl.obolibrary.org/obo/LPT_0000156"},"homepage":"https://www.animalgenome.org/bioinfo/projects/lpt/","license":{"name":"CC-BY-4.0"},"name":"Livestock Product Trait Ontology","prefix":"LPT","repository":"https://github.com/AnimalGenome/livestock-product-trait-ontology","version":"2026-04-01"},"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/LPT/3/lpt.obo"}],"description":"The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.","name":"Livestock Product Trait Ontology","prefix":"LPT","version":"1.4"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Livestock Product Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.","homepage":"https://www.animalgenome.org/bioinfo/projects/lpt/","keywords":["Animal Husbandry","phenotype"],"name":"Livestock Product Trait Ontology","prefix":"FAIRsharing.g78mbm","repository":"https://github.com/AnimalGenome/livestock-product-trait-ontology ","short_names":["LPT"]},"biocontext":{"prefix":"LPT","uri_format":"http://purl.obolibrary.org/obo/LPT_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrg":{"prefix":"lrg","name":null,"description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"LRG","banana_peel":"_","deprecated":null,"mappings":{"biocontext":"LRG","hl7":"2.16.840.1.113883.6.283","integbio":"nbdc02566","miriam":"lrg","n2t":"lrg","togoid":"Lrg"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.","examples":["LRG_1"],"extras":{"miriam_id":"00000376","namespaceEmbeddedInLui":false},"homepage":"http://www.lrg-sequence.org/","name":"Locus Reference Genomic","pattern":"^LRG_\\d+$","prefix":"lrg","providers":[{"code":"","description":"Locus Reference Genomic through Ensembl","homepage":"http://www.ensembl.org/","name":"Locus Reference Genomic through Ensembl","uri_format":"http://www.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$1"},{"code":"","description":"Locus Reference Genomic through Ensembl mirror (asia)","homepage":"http://asia.ensembl.org/","name":"Locus Reference Genomic through Ensembl mirror (asia)","uri_format":"http://asia.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$1"},{"code":"","description":"Locus Reference Genomic through Ensembl mirror (US east)","homepage":"http://useast.ensembl.org/","name":"Locus Reference Genomic through Ensembl mirror (US east)","uri_format":"http://useast.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$1"}],"status":"active","uri_format":"http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml"},"n2t":{"description":"Locus Reference Genomic (LRG) provides identifiers to stable genomic DNA sequences for regions of the human genome, providing a recognized reference-sequence standard for reporting sequence variants. LRG is maintained by the NCBI and the European Bioinformatics Institute (EBI).","examples":["LRG_1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://uswest.ensembl.org/","name":"Locus Reference Genomic through Ensembl mirror (US west)","pattern":"^LRG_\\d+$","prefix":"lrg","uri_format":"http://uswest.ensembl.org/Homo_sapiens/LRG/Summary?lrg=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"LRG","uri_format":"http://identifiers.org/lrg/$1"},"edam":null,"re3data":null,"hl7":{"description":"In collaboration with NCBI, the European Bioinformatics Institute (EBI) is developing the Locus Reference Genomic Sequences (LRG) database, which is a database of reference sequences. LRG is a system for providing a genomic DNA sequence representation of a single gene that is idealized, has a permanent ID (with no versioning), and core content that never changes. LRG is not a nomenclature system. More than one LRG could be created for a region of interest, should that need arise. Additional annotations will be present that may change with time (each item carrying its own date stamp), so that the latest ancillary knowledge about a gene is directly available. In other words, an LRG sequence and its core annotation are not meant to represent current biology knowledge, but to provide a standard for reporting variation in a stable coordinate system. The combination of the LRG plus the updatable-annotation layer will be used to support the biological interpretation of variants.LRG identifiers can be used with the HL7 coded data type (code data type that accepts expression data, or a coded expression data type). This coded data type will be gene symbols can be used with the HL7 coded data type. For example, in the HL7 messages specified according to the HL7 V2 Clinical Genomics Fully LOINC-Qualified Genetic Variation Model, LRG identifiers can be used to as the observation values for Genomic Reference Sequence Identifier (LOINC code: 48013-7). LRG is a database that can be used freely by the public.","extras":{"organization":"Wellcome Trust"},"homepage":"http://ebi.ac.uk","name":"Locus Reference Genomic Sequences (LRG)","preferred_prefix":"lrg","prefix":"2.16.840.1.113883.6.283","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE) are working together to rationalise differences in their gene sets. Records contain information about genomic, transcript and protein sequences, annotations, maps about the genome assembly, etc. This database allows users to search using LRG identifier, HGNC gene name, NCBI and Ensembl accession numbers (gene or transcript), gene synonym or LRG status (public or pending). Genome browsers on Ensembl, NCBI and UCSC are available.","examples":["LRG_41","LRG_356","LRG_147","LRG_660","LRG_498","LRG_364","LRG_203","LRG_162","LRG_1271","LRG_884"],"keywords":["Gene"],"name":"LRG","pattern":"^(?LRG_\\d+)$","prefix":"Lrg","uri_format":"http://identifiers.org/lrg/$1","xrefs":{"integbio":"nbdc02566"}},"integbio":{"description":"LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE) are working together to rationalise differences in their gene sets. Records contain information about genomic, transcript and protein sequences, annotations, maps about the genome assembly, etc. This database allows users to search using LRG identifier, HGNC gene name, NCBI and Ensembl accession numbers (gene or transcript), gene synonym or LRG status (public or pending). Genome browsers on Ensembl, NCBI and UCSC are available.","homepage":"http://www.lrg-sequence.org/","keywords":["Genome/Gene","Protein","Health/Disease","Sequence"],"name":"Locus Reference Genomic","prefix":"nbdc02566","publications":[{"doi":"10.1093/nar/gkt1198","pubmed":"24285302"}],"short_names":["LRG"],"status":"active"},"pathguide":null,"tib":null},"lrmi":{"prefix":"lrmi","name":"Learning Resource Metadata Innovation Terms","description":"The Learning Resource Metadata Innovation (LRMI) specification is a collection of classes and properties for markup and description of educational resources. The specification builds on the extensive vocabulary provided by Schema.org and other standards. LRMI terms not included in schema.org may nevertheless be used to augment and enrich Schema.org markup. (from homepage)","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-terms/$1","uri_format_resolvable":null,"rdf_uri_format":"http://purl.org/dcx/lrmi-terms/$1","providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/lrmi_terms/2022-06-14/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AlignmentObject","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://www.dublincore.org/specifications/lrmi/lrmi_terms/2022-06-14/lrmi-terms.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["education","educational resource","open educational resources"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1677,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrmi.alignmenttype":{"prefix":"lrmi.alignmenttype","name":"LRMI Alignment Type Vocabulary","description":"A concept scheme that defines the types of relationships between a learning resource and a node in an educational framework.","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-vocabs/alignmentType/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/concept_schemes/alignmentType/","repository":"https://github.com/dcmi/lrmi","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"assesses","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://www.dublincore.org/vocabs/alignmentType.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning resource","open educational resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1750,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrmi.educationalaudiencerole":{"prefix":"lrmi.educationalaudiencerole","name":"LRMI Educational Audience Role Vocabulary","description":"A concept scheme that defines the primary or intended roles of the audience (beneficiary) of the resource being described.","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-vocabs/educationalAudienceRole/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/concept_schemes/alignmentType/","repository":"https://github.com/dcmi/lrmi","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"mentor","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://www.dublincore.org/vocabs/educationalAudienceRole.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning resource","open educational resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1750,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrmi.eduse":{"prefix":"lrmi.eduse","name":"LRMI Educational Use Vocabulary","description":"A concept scheme that enumerates the educational uses of a learning resource.","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-vocabs/educationalUse/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/concept_schemes/educationalUse/","repository":"https://github.com/dcmi/lrmi","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"instruction","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://www.dublincore.org/vocabs/educationalUse.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning resource","open educational resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1750,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrmi.interact":{"prefix":"lrmi.interact","name":"LRMI Interact Type Vocabulary","description":"A concept scheme that defines the predominate interact mode of the learning resource being described.","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-vocabs/interactivityType/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/concept_schemes/interactivityType/","repository":"https://github.com/dcmi/lrmi","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"active","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://www.dublincore.org/vocabs/interactivityType.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning resource","open educational resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1750,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lrmi.resourcetype":{"prefix":"lrmi.resourcetype","name":"LRMI Learning Resource Type Concept Scheme","description":"A top-level concept scheme that enumerates different types of Learning Resource, designed to supplement existing more generic resource type schemes and which can support local extensions.","pattern":null,"uri_format":"http://purl.org/dcx/lrmi-vocabs/learningResourceType/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.dublincore.org/specifications/lrmi/concept_schemes/learningResourceType/","repository":"https://github.com/dcmi/lrmi","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"activityPlan","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://www.dublincore.org/vocabs/learningResourceType.ttl","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["learning resource","open educational resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1750,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lspci":{"prefix":"lspci","name":"Laboratory of Systems Pharmacology Compound","description":"Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)","pattern":"^\\d+$","uri_format":"https://labsyspharm.github.io/lspci/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://labsyspharm.github.io/lspci/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemistry","drugs","metabolites"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lter":{"prefix":"lter","name":"Long Term Ecological Research Controlled Vocabulary","description":"Ecological terms","pattern":"^\\d+$","uri_format":"https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://vocab.lternet.edu/vocab/vocab/index.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"182","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"lw":{"prefix":"lw","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"lw"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The LifeWatch Metadata Catalogues plays a crucial role in managing metadata for digital objects, including Datasets, Services, Workflows and Virtual Research Environments. This catalogue serves as the central repository, ensuring that resources are accessible and reusable by stakeholders.","examples":["6e3b1371-59d7-481a-9db4-cd0d0de98436"],"extras":{"miriam_id":"00001084","namespaceEmbeddedInLui":false},"homepage":"https://metadatacatalogue.lifewatch.eu/","name":"LifeWatch Metadata Catalogue","pattern":"^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$","prefix":"lw","status":"active","uri_format":"https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"m4i":{"prefix":"m4i","name":"Metadata4Ing","description":"The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. \"Inheritance\" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research.","pattern":null,"uri_format":"http://w3id.org/nfdi4ing/metadata4ing#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://w3id.org/nfdi4ing/metadata4ing/","repository":"https://git.rwth-aachen.de/nfdi4ing/metadata4ing/metadata4ing","contact":{"name":"Dorothea Iglezakis","orcid":"0000-0002-8524-0569","email":"dorothea.iglezakis@ub.uni-stuttgart.de","github":"doigl"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"05qj6w324","wikidata":null,"name":"Nationale Forschungsdateninfrastruktur","partnered":false}],"example":"Method","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://nfdi4ing.pages.rwth-aachen.de/metadata4ing/metadata4ing/ontology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20402","fairsharing":"FAIRsharing.f8b3ec","lov":"m4i","miriam":"m4i","tib":"m4i","wikidata.entity":"Q111516803","zazuko":"m4i"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Giacomo Lanza","orcid":"0000-0002-2239-3955","email":"giacomo.lanza@ptb.de","github":"Zack-83"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":"nfdi4ing@nfdi.social","github_request_issue":970,"logo":null,"miriam":{"description":"The ontology Metadata4Ing provides a framework for the semantic description of research data and of the whole data generation process, embracing the object of investigation, all sample and data manipulation methods and tools, the data files themselves, and the roles of persons and institutions. The structure and application of the ontology are based on the principles of modularity and inheritance.","examples":["ProcessingStep"],"extras":{"miriam_id":"00001008","namespaceEmbeddedInLui":false},"homepage":"http://www.rwth-aachen.de/cms/~a/root/lidx/1/","name":"Metadata4Ing","pattern":"[A-Za-z_0-9]*","prefix":"m4i","status":"active","uri_format":"http://w3id.org/nfdi4ing/metadata4ing#$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a thorough description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. \"Inheritance\" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research.","homepage":"https://metadata4ing.org","keywords":["Engineering Science"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBaWNHIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--6435da59153a976c6b09d30ac0ee96286c50a32c/Logo.png?disposition=inline","name":"Metadata4Ing","prefix":"FAIRsharing.f8b3ec","repository":"https://git.rwth-aachen.de/nfdi4ing/metadata4ing/metadata4ing","short_names":["m4i"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the informaton contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of inheritance and modularity. \"Inheritance\" means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. Modularity means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research.\"","homepage":"https://w3id.org/nfdi4ing/metadata4ing","license":{"spdx":"CC-BY-4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Metadata4Ing","prefix":"20402","short_names":["m4i"]},"rrid":null,"lov":{"description":"Metadata4Ing defines classes and properties or reuses such classes and properties from other ontologies to describe research processes and research data management in NFDI4Ing. \nNew concepts and properties are located in the namespace of Metadata4Ing.\nMetadata4Ing does not import complete ontologies for the sake of relevance, readability, understandability and usability by and for engineers.\nInstead, it tries to make re-use of existing identifiers for classes and properties by re-using all or a relevant subset of the axioms from the original ontology.\nThese statements have been extracted in different ways, e.g. by using Protégé tools importing an ontology and copying axioms of relevant items to Metadata4Ing or by download from data services or raw files of ontologies and manual copypasting.\nIn some cases there was a need to extend or modify the original set of statements about an entity, e.g. because labels and definitions were expressed with a different owl:AnnotationProperty than the rest of Metadata4Ing, or because a skos:preflabel or a skos:definition in any of the languages we would like to support was missing.\nAny editorial changes on elements from external ontologies are declared in Metadata4Ing by an annotation with skos:editorialNote at item-level.\nTo get the original set of statements we encourage to visit the original namespace of the respective item.\nMetadata4Ing reuses elements from the following ontologies:\n- BIBO = Bibliographic Ontology \n- BIRO = Bibliographic Reference Ontology \n- DCAT = Data Catalog \n- DCTERMS = Dublin Core Terms \n- FOAF = Friend of a Friend \n- OWL = Web Ontology Language \n- PROV = Provenance Namespace \n- QUDT = Quantities, Units, Dimensions and Types \n- RDF = Resource Description Framework \n- RDFS = RDF Schema \n- SCHEMA = schema.org \n- SKOS = Simple Knowledge Organization System \n- SSN = Semantic Sensor Network Ontology \n- VANN = Vocabulary for Annotating vocabulary descriptions \n- XSD = XML Schema Definition \n- EMMO = European Materials and Modelling Ontology \n- BFO = Basic Formal Ontology \n- RO = Relation Ontology \n- PIMS-II = PIMS Interoperability Infrastructure \n- D-SI = Digital System of Units","homepage":"https://nfdi4ing.pages.rwth-aachen.de/metadata4ing/metadata4ing/","keywords":["Academy","Metadata"],"name":"Metadata4Ing: An ontology for describing the generation of research data within a scientific activity.","prefix":"m4i","uri_format":"http://w3id.org/nfdi4ing/metadata4ing#$1"},"zazuko":{"prefix":"m4i","uri_format":"http://w3id.org/nfdi4ing/metadata4ing#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"contact":{"email":"metadata4ing@nfdi4ing.de"},"description":"The ontology Metadata4Ing is developed within the NFDI Consortium NFDI4Ing with the aim of providing a thorough framework for the semantic description of research data, with a particular focus on engineering sciences and neighbouring disciplines. This ontology allows a thorough description of the whole data generation process (experiment, observation, simulation), embracing the object of investigation, all sample and data manipulation procedures, a summary of the data files and the information contained, and all personal and institutional roles. The subordinate classes and relations can be built according to the two principles of _inheritance_ and _modularity_. _Inheritance_ means that a subclass inherits all properties of its superordinate class, possibly adding some new ones. _Modularity_ means that all expansions are independent of each other; this makes possible for instance to generate expanded ontologies for any possible combinations of method × object of research.","extras":{"version.iri":"http://w3id.org/nfdi4ing/metadata4ing/1.4.0"},"keywords":["NFDI4ING","Digital Planning and Construction","FID BAUdigital","NFDI4CAT","engineering"],"name":"Metadata4Ing: An ontology for describing the generation of research data within a scientific activity","prefix":"m4i","tracker":"https://git.rwth-aachen.de/nfdi4ing/metadata4ing/metadata4ing/-/issues","uri_format":"http://w3id.org/nfdi4ing/metadata4ing#$1"}},"ma":{"prefix":"ma","name":null,"description":null,"pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/MA_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MA","bartoc":"1143","biocontext":"MA","bioportal":"MA","fairsharing":"FAIRsharing.pdwqcr","go":"MA","miriam":"ma","n2t":"ma","obofoundry":"ma","ols":"ma","ontobee":"MA","prefixcommons":"ma","wikidata.entity":"Q81661674"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"15774030","doi":"10.1186/gb-2005-6-3-r29","pmc":"PMC1088948","title":"The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus)","examples":["0002502"],"extras":{"miriam_id":"00000445","namespaceEmbeddedInLui":true},"homepage":"http://www.informatics.jax.org/","name":"Mouse Adult Gross Anatomy","pattern":"^MA:\\d+$","prefix":"ma","status":"active","uri_format":"http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1"},"n2t":{"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus)","examples":["0002502"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://www.informatics.jax.org/","name":"Mouse Adult Gross Anatomy at The Jackson Laboratory","pattern":"^MA:\\d+$","prefix":"ma","uri_format":"http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1"},"prefixcommons":{"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus).","examples":["MA:0000021"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/MA#$1"]},"homepage":"http://www.informatics.jax.org/searches/AMA_form.shtml","keywords":["obo","anatomy","mouse"],"name":"Mouse adult gross anatomy","pattern":"^MA:\\d+$","prefix":"ma","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ma:$1"}],"xrefs":{"bioportal":"1000"}},"wikidata":null,"wikidata_entity":null,"go":{"description":"Adult Mouse Anatomical Dictionary; part of Gene Expression Database","homepage":"http://www.informatics.jax.org/","name":"Adult Mouse Anatomical Dictionary","prefix":"MA","uri_format":"http://www.informatics.jax.org/searches/AMA.cgi?id=MA:$1"},"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ma.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/ma.obo"}],"contact":{"email":"Terry.Hayamizu@jax.org","github":"tfhayamizu","name":"Terry Hayamizu","orcid":"0000-0002-0956-8634"},"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus).","domain":"anatomy and development","homepage":"https://github.com/obophenotype/adult-mouse-anatomy-ontology","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Mouse adult gross anatomy","preferred_prefix":"MA","prefix":"ma","repository":"https://github.com/obophenotype/adult-mouse-anatomy-ontology","status":"active","taxon":{"identifier":"10088","name":"Mus","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"Terry.Hayamizu@jax.org","name":"Terry Hayamizu"},"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus).","homepage":"http://www.informatics.jax.org/searches/AMA_form.shtml","name":"Mouse Adult Gross Anatomy Ontology","prefix":"MA","version":"2026-02-24"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ma.owl"}],"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus).","extras":{"version.iri":"http://purl.obolibrary.org/obo/ma/releases/2026-02-24/ma.owl"},"homepage":"https://github.com/obophenotype/adult-mouse-anatomy-ontology","name":"Mouse adult gross anatomy","prefix":"ma","tracker":"https://github.com/obophenotype/adult-mouse-anatomy-ontology/issues","version":"2026-02-24"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MA/131/ma.owl"}],"description":"A structured controlled vocabulary of the adult anatomy of the mouse (Mus).","homepage":"https://github.com/obophenotype/adult-mouse-anatomy-ontology","name":"Mouse adult gross anatomy","prefix":"MA"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mouse adult gross anatomy","prefix":"MA"},"cheminf":null,"fairsharing":{"description":"The Anatomy Ontology for the Adult Mouse is organized spatially and functionally, using \"is a\" and \"part of\" relationships to describe the anatomy of the postnatal mouse. Anatomical terms are arranged as a hierarchy from body region or organ system to tissue substructure. Modeling the anatomy hierarchically makes it possible to record expression results from assays with differing spatial resolution in a consistent and integrated manner. Organizing the anatomical terms as a Directed Acyclic Graph (DAG), i.e., in which a term can have more than one parent, allows presentation of the anatomy from multiple perspectives. In various locations, this ontology is also referred to as: 'Mouse Adult Gross Anatomy ontology', 'Adult Mouse Anatomy', 'Mouse Anatomy' or 'Mouse anatomical entity'. ","homepage":"http://www.informatics.jax.org/vocab/gxd/ma_ontology/","keywords":["Anatomy","organ","tissue"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Mouse Adult Gross Anatomy Ontology","prefix":"FAIRsharing.pdwqcr","publications":[{"doi":"10.1186/gb-2005-6-3-r29","pubmed":"15774030","title":"The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data","url":"http://doi.org/10.1186/gb-2005-6-3-r29","year":2005}],"repository":"https://github.com/obophenotype/mouse-anatomy-ontology","short_names":["MA"]},"biocontext":{"prefix":"MA","uri_format":"http://purl.obolibrary.org/obo/MA_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Classification scheme of Literature of the Middle Ages from the University of Geneva is an internal classification system. It is employed by the Department of German Language and Literature.","name":"Classification Literature Middle Ages","prefix":"1143","short_names":["MA"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"macie":{"prefix":"macie","name":"Mechanism, Annotation and Classification in Enzymes","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Gemma L. Holliday","orcid":"0000-0002-6731-6398","email":"gemma.l.holliday@gmail.com","github":"GLHolliday79"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MACIE","edam":"2641","miriam":"macie","n2t":"macie","prefixcommons":"macie"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17082206","doi":"10.1093/nar/gkl774","pmc":"PMC1634735","title":"MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms","year":2006},{"pubmed":"16188925","doi":"10.1093/bioinformatics/bti693","pmc":"PMC2748267","title":"MACiE: a database of enzyme reaction mechanisms","year":2005},{"pubmed":"17082206","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17082206","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17082206","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.","examples":["M0001"],"extras":{"miriam_id":"00000077","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/thornton-srv/m-csa/about/","name":"MACiE","pattern":"^M\\d{4}$","prefix":"macie","status":"active","uri_format":"https://www.ebi.ac.uk/thornton-srv/m-csa/search/?s=$1"},"n2t":{"description":"MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.","examples":["M0001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html","name":"MACiE database of mechanisms, annotation and classification in enzymes","pattern":"^M\\d{4}$","prefix":"macie","uri_format":"https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1"},"prefixcommons":{"description":"MACiE is an electronic database of well-characterised enzymatic reactions. MACiE is the result of more than three years' collaboration between the Mitchell and Murray-Rust groups in the Unilever Centre and Prof. Janet Thornton at the European Bioinformatics Institute. The database contains the reaction mechanisms for 100 individual enzymes; this includes the overall reactions and the multiple steps that constitute them.","examples":["M0001"],"homepage":"http://www.ebi.ac.uk/thornton-srv/databases/MACiE/","keywords":["enzyme","pathway"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"MACiE","pattern":"^M\\d{4}$","prefix":"macie","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/macie:$1"}],"publications":[{"pubmed":"17082206"}],"uri_format":"http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MACIE","uri_format":"http://identifiers.org/macie/$1"},"edam":{"description":"Identifier of an enzyme reaction mechanism from the MACie database.","name":"Reaction ID (MACie)","prefix":"2641"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"maggot":{"prefix":"maggot","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"maggot"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Sharing descriptive Metadata is the first essential step towards Open Scientific Data. With this in mind, Maggot was specifically designed to annotate datasets by creating a metadata file to attach to the storage space. Indeed, it allows users to easily add descriptive metadata to datasets produced within a collective of people (research unit, platform, multi-partner project, etc.). This approach fits perfectly into a data management plan as it addresses the issues of data organization and documentation, data storage and frictionless metadata sharing within this same collective and beyond.","examples":["frim1"],"extras":{"miriam_id":"00001038","namespaceEmbeddedInLui":false},"homepage":"https://eng-bfp.bordeaux-aquitaine.hub.inrae.fr/resources/metabolome-platform","name":"Maggot","pattern":"^[A-Za-z0-9]+$","prefix":"maggot","status":"active","uri_format":"https://pmb-bordeaux.fr/maggot/metadata/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"maizegdb.locus":{"prefix":"maizegdb.locus","name":"MaizeGDB Locus","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Margaret R. Woodhouse","orcid":"0000-0003-2164-8300","email":"margaret.woodhouse@usda.gov","github":"margaretwoodhouse"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MAIZEGDB.LOCUS","go":"MaizeGDB_Locus","integbio":"nbdc00129","miriam":"maizegdb.locus","n2t":"maizegdb.locus","ncbi":"MaizeGDB","prefixcommons":"maizegdb","re3data":"r3d100010795","uniprot":"DB-0058"},"synonyms":["MaizeGDB"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31555312","doi":"10.3389/fpls.2019.01050","pmc":"PMC6724615","title":"MaizeDIG: Maize Database of Images and Genomes","year":2019},{"pubmed":"30407532","doi":"10.1093/nar/gky1046","pmc":"PMC6323944","title":"MaizeGDB 2018: the maize multi-genome genetics and genomics database","year":2019},{"pubmed":"26519406","doi":"10.1007/978-1-4939-3167-5_9","pmc":null,"title":"MaizeGDB: The Maize Genetics and Genomics Database","year":2016},{"pubmed":"26432828","doi":"10.1093/nar/gkv1007","pmc":"PMC4702771","title":"MaizeGDB update: new tools, data and interface for the maize model organism database","year":2015},{"pubmed":"18769488","doi":"10.1155/2008/496957","pmc":"PMC2518694","title":"MaizeGDB: The maize model organism database for basic, translational, and applied research","year":2008},{"pubmed":"17202174","doi":"10.1093/nar/gkl1048","pmc":"PMC1899092","title":"MaizeGDB's new data types, resources and activities","year":2007},{"pubmed":"17202174","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681441","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21565781","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18769488","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"34416864","doi":"10.1186/s12870-021-03173-5","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MaizeGDB is the maize research community's central repository for genetics and genomics information.","examples":["25011"],"extras":{"miriam_id":"00000177","namespaceEmbeddedInLui":false},"homepage":"http://www.maizegdb.org/","name":"MaizeGDB Locus","pattern":"^\\d+$","prefix":"maizegdb.locus","status":"active","uri_format":"http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"},"n2t":{"description":"MaizeGDB is the maize research community's central repository for genetics and genomics information.","examples":["25011"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.maizegdb.org/","name":"MaizeGDB at Missouri","pattern":"^\\d+$","prefix":"maizegdb.locus","uri_format":"http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"},"prefixcommons":{"description":"MaizeGDB is the maize research community's central repository for genetics and genomics information.","examples":["25011"],"homepage":"http://www.maizegdb.org","keywords":["genome","DNA"],"name":"Maize Genetics and Genomics Database","pattern":"^\\d+$","prefix":"maizegdb","prefix_synonyms":["maizegdb.locus","maizegdb_qtl"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/maizegdb:$1"}],"publications":[{"pubmed":"18769488"}],"uri_format":"http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.maizegdb.org/","name":"MaizeGDB","prefix":"MaizeGDB_Locus","uri_format":"https://www.maizegdb.org/gene_center/gene/$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["635633"],"homepage":"http://www.maizegdb.org/","name":"Maize Genome Database unique identifiers","prefix":"MaizeGDB"},"uniprot":{"homepage":"https://www.maizegdb.org/","keywords":["Organism-specific databases"],"name":"Maize Genetics and Genomics Database","prefix":"DB-0058","publications":[{"doi":"10.1186/s12870-021-03173-5","pubmed":"34416864"}],"short_names":["MaizeGDB"],"uri_format":"https://www.maizegdb.org/data_center/gene_product?id=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MAIZEGDB.LOCUS","uri_format":"http://identifiers.org/maizegdb.locus/$1"},"edam":null,"re3data":{"description":"The Maize Genetics and Genomics Database focuses on collecting data related to the crop plant and model organism Zea mays. The project's goals are to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models. MaizeGDB also aims to make the Maize Newsletter available, and provide support services to the community of maize researchers.\nMaizeGDB is working with the Schnable lab, the Panzea project, The Genome Reference Consortium, and iPlant Collaborative to create a plan for archiving, dessiminating, visualizing, and analyzing diversity data.\nMMaizeGDB is short for Maize Genetics/Genomics Database. It is a USDA/ARS funded project to integrate the data found in MaizeDB and ZmDB into a single schema, develop an effective interface to access this data, and develop additional tools to make data analysis easier. Our goal in the long term is a true next-generation online maize database.aize genetics and genomics database.","homepage":"https://www.maizegdb.org/","license":{"name":"Public Domain"},"name":"MaizeGDB","prefix":"r3d100010795","prefix_synonyms":["Maize Genetics and Genomics Database"],"xrefs":{"doi":"10.17616/R3V32B","nif":"0000-03096"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MaizeGDB is a integrated database of the crop plant and model organism Zea mays. It contains maps, gene product information, loci and their various alleles, phenotypes (both naturally occurring and as a result of directed mutagenesis), stocks, sequences, molecular markers, references and contact information for maize researchers on worldwide. Moreover, users are able to obtain various community support service bulletin boards including the Editorial Board's list of high-impact papers, information about the Annual Maize genetics Conference and the Jobs board where employment opportunities are posted.","homepage":"http://www.maizegdb.org/","keywords":["Genome/Gene","cDNA/EST","Genetic variation","Protein","Organism","Bioresource","Sequence","Expression","Interaction/Pathway","Image/Movie","Portal"],"name":"Maize Genetics and Genomics Database","prefix":"nbdc00129","publications":[{"pubmed":"17202174"},{"pubmed":"14681441"},{"pubmed":"21565781"}],"short_names":["MaizeGDB"],"status":"active","xrefs":{"fairsharing":"biodbcore-000414"}},"pathguide":null,"tib":null},"mamo":{"prefix":"mamo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000026","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MAMO","banana_peel":"_","deprecated":null,"mappings":{"aberowl":"MAMO","biocontext":"MAMO","bioportal":"MAMO","fairsharing":"FAIRsharing.kbz5jh","miriam":"mamo","n2t":"mamo","obofoundry":"mamo","ols":"mamo","ontobee":"MAMO","wikidata.entity":"Q113014441"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","examples":["MAMO_0000026"],"extras":{"miriam_id":"00000517","namespaceEmbeddedInLui":false},"homepage":"http://bioportal.bioontology.org/ontologies/MAMO","name":"Mathematical Modelling Ontology","pattern":"^MAMO_\\d{7}$","prefix":"mamo","status":"active","uri_format":"http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/$1"},"n2t":{"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","examples":["MAMO_0000026"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://bioportal.bioontology.org/ontologies/MAMO","name":"MAMO through BioPortal","pattern":"^MAMO_\\d{7}$","prefix":"mamo","uri_format":"http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mamo.owl"}],"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","domain":"simulation","homepage":"http://sourceforge.net/p/mamo-ontology/wiki/Home/","license":{"name":"Artistic License 2.0","url":"http://opensource.org/licenses/Artistic-2.0"},"name":"Mathematical modeling ontology","preferred_prefix":"MAMO","prefix":"mamo","repository":"http://sourceforge.net/p/mamo-ontology","status":"orphaned"},"bioportal":{"contact":{"email":"mamo-ontology-discuss@lists.sourceforge.net","name":"mamo-ontology-discuss"},"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","homepage":"http://co.mbine.org/standards/mamo","name":"Mathematical Modelling Ontology","prefix":"MAMO","version":"2023-02-03"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/EBISPOT/mamo/main/mamo.rdf"}],"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","homepage":"http://sourceforge.net/p/mamo-ontology/wiki/Home/","name":"Mathematical Modelling Ontology","prefix":"mamo","tracker":"http://sourceforge.net/p/mamo-ontology/tickets/","version":"2023-02-03"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MAMO/17/mamo.owl"}],"description":"The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.","homepage":"http://sourceforge.net/p/mamo-ontology/wiki/Home/","name":"Mathematical modeling ontology","prefix":"MAMO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mathematical modeling ontology","prefix":"MAMO"},"cheminf":null,"fairsharing":{"contact":{"email":"n.lenovere@gmail.com","name":"Nicolas Le Novere","orcid":"0000-0002-6309-7327"},"description":"Classification of the types of mathematical models used mostly in the life sciences, the types of variables, the types of readout and other relevant features.","homepage":"https://sourceforge.net/p/mamo-ontology/wiki/Home/","keywords":["Systems Biology","Computational Biology","Mathematics"],"license":{"url":"https://opensource.org/licenses/artistic-license-2.0.php"},"name":"Mathematical Modelling Ontology","prefix":"FAIRsharing.kbz5jh","short_names":["MAMO"]},"biocontext":{"prefix":"MAMO","uri_format":"http://purl.obolibrary.org/obo/MAMO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mampol":{"prefix":"mampol","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"mampol"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches).","examples":["MAMpol005339"],"homepage":"http://mampol.uab.es","keywords":["DNA"],"name":"Mammalia Polymorphism Database","pattern":"^MAMpol\\d+$","prefix":"mampol","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mampol:$1"}],"uri_format":"http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mao":{"prefix":"mao","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000061","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MAO","fairsharing":"FAIRsharing.zsnv69","obofoundry":"mao","prefixcommons":"mao","wikidata.entity":"Q114677893"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment.","examples":["MAO:0000061"],"homepage":"http://bips.u-strasbg.fr/LBGI/MAO/mao.html","keywords":["obo","sequence","alignment"],"name":"Multiple Alignment Ontology","pattern":"^MAO_\\d+$","prefix":"mao","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mao:$1"}],"xrefs":{"bioportal":"1026"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"julie@igbmc.u-strasbg.fr","name":"Julie Thompson"},"domain":"chemistry and biochemistry","homepage":"http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html","name":"Multiple alignment","preferred_prefix":"MAO","prefix":"mao","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"MAO is an ontology for multiple alignments of nucleic and protein sequences. MAO is designed to improve interoperation and data sharing between different alignment protocols for the construction of a high quality, reliable multiple alignment in order to facilitate knowledge extraction and the presentation of the most pertinent information to the biologist.","homepage":"http://bioportal.bioontology.org/ontologies/1026","keywords":["Life Science","Nucleic acid sequence","polypeptide region"],"name":"Multiple alignment","prefix":"FAIRsharing.zsnv69","publications":[{"doi":"10.1093/nar/gki735","pubmed":"16043635","title":"MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences","url":"http://doi.org/10.1093/nar/gki735","year":2005}],"short_names":["MAO"]},"biocontext":{"prefix":"MAO","uri_format":"http://purl.obolibrary.org/obo/MAO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"marc21":{"prefix":"marc21","name":"Machine-readable Cataloging (MARC) List for Languages","description":"MARC List for Languages provides three-character lowercase alphabetic strings that serve as the identifiers of languages and language groups. The codes are usually based on the first three letters of the English form or, in some cases, vernacular form of the corresponding language name. The codes are varied where necessary to resolve conflicts and are not intended to be abbreviations of a language name. When the name of a language is changed in the list, the original code is generally retained. The codes in this list are equivalent to those of ISO 639-2 (Bibliographic) codes and some codes from ISO 639-5, although the language name labels may differ. They are linked to the equivalent codes in ISO 639-2 and ISO 639-5 and the corresponding two-character codes in ISO 639-1. The list contains over 480 discrete codes. It is also searchable at: MARC Code List for Languages.","pattern":null,"uri_format":"https://id.loc.gov/vocabulary/languages/$1","uri_format_resolvable":null,"rdf_uri_format":"http://id.loc.gov/vocabulary/languages/$1","providers":null,"homepage":"https://id.loc.gov/vocabulary/languages.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"amh","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://id.loc.gov/vocabulary/languages.skos.rdf","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"markerdb":{"prefix":"markerdb","name":"MarkerDB","description":"MarkerDB is a freely available electronic database that attempts to consolidate information on all known clinical and pre-clinical biomarkers into a single resource. It provides identifiers for known clinical and pre-clinical biomarkers. Each entry provides detailed annotations, including biomarker descriptions, associated conditions, specificity, sensitivity, molecular structures, chromosomal locations, and clinical approval status.","pattern":"^MDB\\d{8}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://markerdb.ca","repository":null,"contact":{"name":"David S. Wishart","orcid":"0000-0002-3207-2434","email":"dwishart@ualberta.ca","github":"DavidWishartLab"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MDB00000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39535054","doi":"10.1093/nar/gkae1056","pmc":null,"title":"MarkerDB 2.0: a comprehensive molecular biomarker database for 2025","year":2024},{"pubmed":"33245771","doi":"10.1093/nar/gkaa1067","pmc":"PMC7778954","title":"MarkerDB: an online database of molecular biomarkers","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1330,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"massbank":{"prefix":"massbank","name":"MassBank","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Tobias Schulze","orcid":"0000-0002-9744-8914","email":"tobias.schulze@ufz.de","github":"tsufz"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MASSBANK","integbio":"nbdc00298","miriam":"massbank","n2t":"massbank","wikidata":"P6689"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20623627","doi":"10.1002/jms.1777","pmc":null,"title":"MassBank: a public repository for sharing mass spectral data for life sciences","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).","examples":["MSBNK-IPB_Halle-PB000166"],"extras":{"miriam_id":"00000273","namespaceEmbeddedInLui":false},"homepage":"http://www.massbank.jp","name":"MassBank","pattern":"^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$","prefix":"massbank","providers":[{"code":"massbankeu","description":"MassBank in Europe","homepage":"https://massbank.eu/","name":"MassBank in Europe","uri_format":"https://massbank.eu/MassBank/RecordDisplay?id=$1"}],"status":"active","uri_format":"https://massbank.jp/MassBank/RecordDisplay?id=$1"},"n2t":{"description":"MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).","examples":["PB000166"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.massbank.jp","name":"MassBank in Japan","pattern":"^[A-Z]{2}[A-Z0-9][0-9]{5}$","prefix":"massbank","uri_format":"http://www.massbank.jp/jsp/FwdRecord.jsp?id=$1"},"prefixcommons":null,"wikidata":{"description":"accession number for entries in the MassBank database (records of mass spectrometry)","examples":["MSBNK-Athens_Univ-AU112601","MSBNK-Eawag-EA030311","SMI00011"],"homepage":"https://massbank.eu/","name":"MassBank accession ID","pattern":"^MSBNK-[A-Za-z0-9_]{1,32}-[A-Za-z0-9_]{1,64}$","prefix":"P6689","uri_format":"https://massbank.eu/MassBank/RecordDisplay?id=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MASSBANK","uri_format":"http://identifiers.org/massbank/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was developed by the Institute for Advanced Biosciences, Keio University (IAB) Analytical Chemistry Group, and the RIKEN Plant Science Center (PSC) Metabolomics Research Group. MassBank is used to search chemical compounds that have been detected by mass spectrometry for chemical identification, structure detail, similar spectrum search, etc. MassBank was recognized as the official mass spectral database of the Mass Spectrometry Society of Japan in 2008. It also contains the results of the NEDO project.","homepage":"https://massbank.jp/MassBank/","keywords":["Metabolite","Method","Chemical structure"],"name":"High Resolution Mass Spectral Database","prefix":"nbdc00298","publications":[{"pubmed":"20623627"}],"short_names":["MassBank"],"status":"active"},"pathguide":null,"tib":null},"massive":{"prefix":"massive","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MASSIVE","miriam":"massive","n2t":"massive","uniprot":"DB-0241"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"32929271","doi":"10.1038/s41592-020-0955-0","pmc":"PMC7541731","title":"MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets","year":2020},{"pubmed":"31686107","doi":"10.1093/nar/gkz984","pmc":"PMC7145525","title":"The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics","year":2020},{"pubmed":"30172843","doi":"10.1016/j.cels.2018.08.004","pmc":"PMC6279426","title":"Assembling the Community-Scale Discoverable Human Proteome","year":2018},{"pubmed":"27504778","doi":"10.1038/nbt.3597","pmc":"PMC5321674","title":"Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking","year":2016},{"pubmed":"27924013","doi":"10.1093/nar/gkw936","pmc":"PMC5210636","title":"The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition","year":2016},{"pubmed":"30172843","doi":"10.1016/j.cels.2018.08.004","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.","examples":["MSV000082131"],"extras":{"miriam_id":"00000650","namespaceEmbeddedInLui":false},"homepage":"https://www.omicsdi.org/","name":"MassIVE","pattern":"^MSV\\d+$","prefix":"massive","providers":[{"code":"","description":"MassIVE","homepage":"https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp","name":"MassIVE","uri_format":"https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1"}],"status":"active","uri_format":"https://www.omicsdi.org/dataset/massive/$1"},"n2t":{"description":"MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.","examples":["MSV000082131"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp","name":"MassIVE","pattern":"^MSV\\d+$","prefix":"massive","uri_format":"https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://massive.ucsd.edu/","keywords":["Proteomic databases"],"name":"MassIVE - Mass Spectrometry Interactive Virtual Environment","prefix":"DB-0241","publications":[{"doi":"10.1016/j.cels.2018.08.004","pubmed":"30172843"}],"short_names":["MassIVE"],"uri_format":"https://massive.ucsd.edu/ProteoSAFe/protein_explorer.jsp?libraries=2&protein_name=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MASSIVE","uri_format":"http://identifiers.org/massive/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mastodon":{"prefix":"mastodon","name":"Mastodon","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mastodon.social","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P4033"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"address on the Mastodon decentralized social network (the form is 'user@server.domain' without a leading '@')","examples":["jz@mamot.fr","libreoffice@fosstodon.org"],"name":"Mastodon address","pattern":"^[A-Za-z0-9_]+([A-Za-z0-9_\\.]+[A-Za-z0-9_]+)?@[\\d\\w\\.\\-]+[0-9a-z]+$","prefix":"P4033","short_names":["Mastodon"],"uri_format":"https://fedirect.toolforge.org/?id=$1","xrefs":{"wikidata":"Q27986619"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mat":{"prefix":"mat","name":"Minimal Anatomical Terminology","description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000000","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MAT","biocontext":"MAT","bioportal":"MAT","fairsharing":"FAIRsharing.qtb9yb","obofoundry":"mat","wikidata.entity":"Q114677894"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"j.bard@ed.ac.uk","name":"Jonathan Bard"},"domain":"anatomy and development","name":"Minimal anatomical terminology","preferred_prefix":"MAT","prefix":"mat","status":"inactive"},"bioportal":{"contact":{"email":"J.Bard@ed.ac.uk","name":"Jonathan Bard"},"description":"A minimal set of terms for anatomy.","name":"Minimal Anatomical Terminology","prefix":"MAT","version":"1.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/MAT/3/mat.obo"}],"description":"Minimal set of terms for anatomy","name":"Minimal Anatomical Terminology","prefix":"MAT","version":"1.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"Minimal set of terms for anatomy.","homepage":"http://bioportal.bioontology.org/ontologies/MAT?p=summary","keywords":["Life Science","Anatomy"],"name":"Minimal Anatomical Terminology","prefix":"FAIRsharing.qtb9yb","short_names":["MAT"]},"biocontext":{"prefix":"MAT","uri_format":"http://purl.obolibrary.org/obo/MAT_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mathmoddb":{"prefix":"mathmoddb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/mardi4nfdi/MathModDB","repository":"https://github.com/mardi4nfdi/MathModDB","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ComputationalTask","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mathmoddb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://mardi4nfdi.github.io/MathModDB/ontology.owl"}],"description":"This is the MathModDB Ontology for documenting mathematical models.","keywords":["NFDI4ING","computer science","mathematics","engineering"],"name":"MathModDB Ontology","prefix":"mathmoddb","tracker":"https://github.com/MaRDI4NFDI/MathModDB/issues","uri_format":"https://mardi4nfdi.de/mathmoddb#$1"}},"matrixdb":{"prefix":"matrixdb","name":"MatrixDB","description":"MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides","pattern":null,"uri_format":"http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://matrixdb.univ-lyon1.fr/","repository":null,"contact":{"name":"Sylvie Ricard-Blum","orcid":"0000-0001-9263-1851","email":"sylvie.ricard-blum@univ-lyon1.fr","github":"ricardblum"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MULT_4_VAR1_bovine","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"matrixdb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc01222","pathguide":"298","prefixcommons":"matrixdb","re3data":"r3d100010672"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"30371822","doi":"10.1093/nar/gky1035","pmc":"PMC6324007","title":"MatrixDB: integration of new data with a focus on glycosaminoglycan interactions","year":2019},{"pubmed":"25378329","doi":"10.1093/nar/gku1091","pmc":"PMC4383919","title":"MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities","year":2014},{"pubmed":"20852260","doi":"10.1093/nar/gkq830","pmc":"PMC3013758","title":"MatrixDB, the extracellular matrix interaction database","year":2010},{"pubmed":"19147664","doi":"10.1093/bioinformatics/btp025","pmc":"PMC2647840","title":"MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions","year":2009}],"appears_in":["complexportal"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Sucharitha Balu","orcid":"0000-0001-7456-0594","email":"sbalu@ebi.ac.uk","github":"CP-SB"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"MatrixDB is a database reporting mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. Interactions with lipids and cations are also reported. Full-length molecules, fragments and multimers present in the extracellular matrix are all included in the database.","examples":["P00747_P07355"],"homepage":"http://matrixdb.ibcp.fr","keywords":["protein","small molecule","interaction"],"license":{"name":"http://dip.doe-mbi.ucla.edu/dip/termsofuse.html","url":"http://dip.doe-mbi.ucla.edu/dip/termsofuse.html"},"name":"MatrixDB: Extracellular Matrix interactions database","pattern":"^[A-Z]\\d+_[A-Z]\\d+$","prefix":"matrixdb","prefix_synonyms":["matrixdb.association"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/matrixdb:$1"}],"publications":[{"pubmed":"19147664"}],"uri_format":"http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$1&class=Association"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.\nMatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009","homepage":"https://matrixdb.univ-lyon1.fr/","name":"MatrixDB","prefix":"r3d100010672","prefix_synonyms":["Extracellular Matrix interactions DataBase"],"xrefs":{"doi":"10.17616/R3M03H","nif":"0000-10226","omics":"01918"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MatrixDB is a database focused on interactions established by extracellular proteins and polysaccharides. This database takes into account the multimeric nature of the extracellular proteins, for example, collagens, laminins and thrombospondins which are multimers.This database includes interaction data extracted from the literature by manual curation, and this database offers access to relevant data involving extracellular proteins provided by thier IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database.\nMatrixDB is an active member of the International Molecular Exchange (IMEx) consortium.","homepage":"http://matrixdb.univ-lyon1.fr","keywords":["Protein","Carbohydrate","Metabolite","Interaction/Pathway"],"name":"Extracellular Matrix interactions DataBase","prefix":"nbdc01222","publications":[{"pubmed":"20852260"},{"pubmed":"20213321"},{"pubmed":"19147664"}],"short_names":["MatrixDB"],"status":"active"},"pathguide":{"homepage":"http://matrixdb.univ-lyon1.fr/","keywords":["PSI-MI"],"name":"Extracellular Matrix Interactions Database","prefix":"298","short_names":["MatrixDB"]},"tib":null},"matrixdb.association":{"prefix":"matrixdb.association","name":"MatrixDB Association","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"matrixdb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MATRIXDB.ASSOCIATION","miriam":"matrixdb.association","n2t":"matrixdb.association"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.","examples":["P00747__P07355"],"extras":{"miriam_id":"00000068","namespaceEmbeddedInLui":false},"homepage":"https://matrixdb.univ-lyon1.fr/","name":"MatrixDB","pattern":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$","prefix":"matrixdb.association","status":"active","uri_format":"https://matrixdb.univ-lyon1.fr/association/$1"},"n2t":{"description":"MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.","examples":["P00747__P07355"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://matrixdb.univ-lyon1.fr/","name":"MatrixDB Association","pattern":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$","prefix":"matrixdb.association","uri_format":"http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MATRIXDB.ASSOCIATION","uri_format":"http://identifiers.org/matrixdb.association/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mavedb":{"prefix":"mavedb","name":"Multiplexed Assays of Variant Effect Database","description":"Some IDs may represent experiment sets, e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011 Others represent genomic regions (specifically deep mutational scans thereof) e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011-a","pattern":"^\\S+$","uri_format":"https://www.mavedb.org/#/experiments/urn:mavedb:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.mavedb.org","repository":"https://github.com/VariantEffect/mavedb-api","contact":{"name":"Alan Rubin","orcid":"0000-0003-1474-605X","email":"alan.rubin@wehi.edu.au","github":"afrubin"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000011-a","example_extras":["00000011"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39838450","doi":"10.1186/s13059-025-03476-y","pmc":"PMC11753097","title":"MaveDB 2024: a curated community database with over seven million variant effects from multiplexed functional assays","year":2025},{"pubmed":"31679514","doi":"10.1186/s13059-019-1845-6","pmc":"PMC6827219","title":"MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This is an interesting one as the full IDs as they appear on the page are of the form `urn:mavedb:00000011-a` suggesting this is the preferred URI expansion for identification purposes. However, mavedb hasn't been registered with IANA https://www.iana.org/assignments/urn-namespaces/urn-namespaces.xhtml","contributor":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1045,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"maxo":{"prefix":"maxo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MAXO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000008","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MAXO","biolink":"MAXO","bioportal":"MAXO","fairsharing":"FAIRsharing.945c78","miriam":"maxo","obofoundry":"maxo","ols":"maxo","ontobee":"MAXO","wikidata.entity":"Q113012668"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.","examples":["0001073"],"extras":{"miriam_id":"00001032","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/maxo","name":"Medical Action Ontology","pattern":"^\\d{7}$","prefix":"maxo","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/maxo/terms?obo_id=MAXO:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["ecto"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/maxo.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/maxo.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/maxo.json"}],"contact":{"email":"Leigh.Carmody@jax.org","github":"LCCarmody","name":"Leigh Carmody","orcid":"0000-0001-7941-2961"},"depends_on":["chebi","foodon","go","hp","iao","nbo","obi","ro","uberon"],"description":"The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations.","domain":"health","homepage":"https://github.com/monarch-initiative/MAxO","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"logo":"https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/maxo-logos/maxo_logo_black-banner.png","name":"Medical Action Ontology","preferred_prefix":"MAXO","prefix":"maxo","repository":"https://github.com/monarch-initiative/MAxO","status":"active"},"bioportal":{"contact":{"email":"Leigh.Carmody@jax.org","name":"Leigh Carmody"},"description":"The Medical Action Ontology (MAxO) provides a structured vocabulary for medical procedures, interventions, therapies, and treatments for disease with an emphasis on rare disease (RD). It is often difficult to find relevant clinical literature about strategies to manage RD patients. Responding to this need, MAxO provides a vocabulary to annotate diseases and phenotypes with recommended treatments and interventions., An ontology to represent medically relevant actions, procedures, and recommendations.","homepage":"https://github.com/monarch-initiative/MAxO","license":{"name":"CC-BY-4.0"},"name":"Medical Action Ontology","prefix":"MAXO","version":"2026-01-15"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/maxo.owl"}],"description":"An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.","extras":{"version.iri":"http://purl.obolibrary.org/obo/maxo/releases/2026-01-15/maxo.owl"},"homepage":"https://github.com/monarch-initiative/MAxO","name":"Medical Action Ontology","prefix":"maxo","tracker":"https://github.com/monarch-initiative/MAxO/issues","version":"2026-01-15"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MAXO/46/maxo.owl"}],"description":"The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations.","homepage":"https://github.com/monarch-initiative/MAxO","name":"Medical Action Ontology","prefix":"MAXO"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"MAXO","uri_format":"http://purl.obolibrary.org/obo/MAXO_$1"},"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Medical Action Ontology","prefix":"MAXO"},"cheminf":null,"fairsharing":{"contact":{"email":"Leigh.Carmody@jax.org","name":"Leigh Carmody","orcid":"0000-0001-7941-2961"},"description":"The Medical Action Ontology (MAxO) is being developed to provide a structured vocabulary for medical procedures, interventions, therapies, and treatments for rare diseases.","homepage":"https://github.com/monarch-initiative/MAxO","keywords":["Medicine","Rare Disorder"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Medical Action Ontology","prefix":"FAIRsharing.945c78","publications":[{"doi":"10.1101/2023.07.13.23292612","pubmed":"37503136","title":"The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease","url":"https://doi.org/10.1101/2023.07.13.23292612","year":2023}],"short_names":["MAxO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mba":{"prefix":"mba","name":"Mouse Brain Atlas","description":"A controlled vocabulary to support the study of transcription in the mouse brain","pattern":"^\\d+$","uri_format":"https://purl.brain-bican.org/ontology/mbao/MBA_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"biopragmatics","name":"MBA from Biopragmatics","description":"Biopragmatics provider for MBA","homepage":"https://biopragmatics.github.io/providers/mba","uri_format":"https://biopragmatics.github.io/providers/mba/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://mouse.brain-map.org","repository":"https://github.com/brain-bican/mouse_brain_atlas_ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"688","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bioportal":"ABA-AMB","ols":"mba"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"MBA","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"chinhda@alleninstitute.org","name":"Allen Institute for Brain Science"},"description":"Allen Brain Atlas P56 Mouse Ontology","homepage":"http://www.brain-map.org","name":"Allen Brain Atlas (ABA) Adult Mouse Brain Ontology","prefix":"ABA-AMB","publications":[{"url":"http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470054085.html"}],"version":"1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://purl.brain-bican.org/ontology/mbao/mbao.owl"}],"contact":{"email":"cellsemantics@gmail.com"},"description":"An application ontology built by combining ontologised versions of the Allen Institute Mouse Brain Atlas (MBA) StructureGraph mapped to Uberon.","extras":{"version.iri":"https://purl.brain-bican.org/ontology/mbao/releases/2025-10-29/mbao.owl"},"homepage":"https://purl.brain-bican.org/ontology/mbao","name":"Mouse Brain Atlas Ontology","prefix":"mba","uri_format":"https://purl.brain-bican.org/ontology/mbao/MBA_$1","version":"2025-10-29"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mcc":{"prefix":"mcc","name":"Cell Line Ontology [derivative]","description":null,"pattern":null,"uri_format":"http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ThoracicArtery","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"bioportal":"MCCL"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"usha@molecularconnections.com","name":"Usha Mahadevan"},"description":"Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.","homepage":"http://www.molecularconnections.com","name":"Cell Line Ontology [by Mahadevan]","prefix":"MCCL","version":"2"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mco":{"prefix":"mco","name":null,"description":null,"pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/MCO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000858","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MCO","bioportal":"MCO","obofoundry":"mco","ols":"mco","ontobee":"MCO","wikidata.entity":"Q81661676"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mco.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mco.obo"}],"contact":{"email":"citlalli.mejiaalmonte@gmail.com","github":"citmejia","name":"Citlalli Mejía-Almonte","orcid":"0000-0002-0142-5591"},"depends_on":["bfo","chebi","cl","clo","micro","ncbitaxon","ncit","obi","omit","omp","pato","peco","uberon","zeco"],"description":"Microbial Conditions Ontology is an ontology...","domain":"investigations","homepage":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Microbial Conditions Ontology","preferred_prefix":"MCO","prefix":"mco","repository":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology","status":"active"},"bioportal":{"contact":{"email":"citlalli.mejiaalmonte@gmail.com","name":"Citlalli Mejía-Almonte"},"description":"Microbial Conditions Ontology contains terms to describe growth conditions in microbiological experiments. The first version is based on gene regulation experiments in Escherichia coli K-12. It is being used in RegulonDB to link growth conditions to gene regulation data.","homepage":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology","name":"Microbial Conditions Ontology","prefix":"MCO"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mco.owl"}],"description":"Microbial Conditions Ontology is an ontology...","extras":{"version.iri":"http://purl.obolibrary.org/obo/mco/releases/2019-05-15/mco.owl"},"homepage":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology","name":"Microbial Conditions Ontology","prefix":"mco","tracker":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology/issues","version":"2019-05-15"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MCO/2/mco.owl"}],"description":"Microbial Conditions Ontology is an ontology...","homepage":"https://github.com/microbial-conditions-ontology/microbial-conditions-ontology","name":"Microbial Conditions Ontology","prefix":"MCO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Microbial Conditions Ontology","prefix":"MCO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mcro":{"prefix":"mcro","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MCRO","bioportal":"MCRO","miriam":"mcro","obofoundry":"mcro","ols":"mcro","ontobee":"MCRO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"An ontology representing the model card structure, he aim of this work is to describe machine learning models to communicate information about specific details about the model (trade offs, intended users, licensing, etc.). ","examples":["0000027"],"extras":{"miriam_id":"00001049","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/mcro","name":"Model Card Ontology","pattern":"^MCRO:\\d+$","prefix":"mcro","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mcro.owl"}],"contact":{"email":"muamith@utmb.edu","github":"ProfTuan","name":"Tuan Amith","orcid":"0000-0003-4333-1857"},"depends_on":["iao","swo"],"description":"An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.","domain":"information technology","homepage":"https://github.com/UTHealth-Ontology/MCRO","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Model Card Report Ontology","preferred_prefix":"MCRO","prefix":"mcro","publications":[{"doi":"10.1186/s12859-022-04797-6","title":"Toward a standard formal semantic representation of the model card report"}],"repository":"https://github.com/UTHealth-Ontology/MCRO","status":"active"},"bioportal":{"contact":{"email":"muamith@utmb.edu","name":"Tuan Amith"},"description":"An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers., An ontology representing the model card structure","homepage":"https://github.com/UTHealth-Ontology/MCRO","license":{"name":"CC-BY-4.0"},"name":"Model Card Report Ontology","prefix":"MCRO","version":"2023-03-07"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mcro.owl"}],"description":"An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mcro/releases/2023-03-07/mcro.owl"},"homepage":"https://github.com/UTHealth-Ontology/MCRO","name":"Model Card Report Ontology","prefix":"mcro","tracker":"https://github.com/UTHealth-Ontology/MCRO/issues","version":"2023-03-07"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MCRO/3/mcro.owl"}],"description":"An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.","homepage":"https://github.com/UTHealth-Ontology/MCRO","name":"Model Card Report Ontology","prefix":"MCRO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Model Card Report Ontology","prefix":"MCRO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mdl":{"prefix":"mdl","name":"Molecular Design Limited Hash","description":"The MDL number contains a unique identification number for each reaction and variation. The format is RXXXnnnnnnnn. R indicates a reaction, XXX indicates which database contains the reaction record. The numeric portion, nnnnnnnn, is an 8-digit number. [wikipedia]","pattern":"^\\w{4}\\d{8}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://en.wikipedia.org/wiki/Chemical_file_format#MDL_number","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MFCD00011659","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://en.wikipedia.org/wiki/Chemical_file_format#MDL_number"],"publications":null,"appears_in":["xlmod"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1311,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mdm":{"prefix":"mdm","name":"Medical Data Models","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Bernd Müller","orcid":"0000-0003-3062-8192","email":"bernd.mueller@zbmed.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MDM","miriam":"mdm","n2t":"mdm","re3data":"r3d100013816"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26868052","doi":"10.1093/database/bav121","pmc":"PMC4750548","title":"Portal of medical data models: information infrastructure for medical research and healthcare","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.","examples":["4776"],"extras":{"miriam_id":"00000574","namespaceEmbeddedInLui":false},"homepage":"https://medical-data-models.org/","name":"MDM","pattern":"^\\d+$","prefix":"mdm","status":"active","uri_format":"https://medical-data-models.org/forms/$1"},"n2t":{"description":"The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.","examples":["4776"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://medical-data-models.org/","name":"MDM at University of Muenster","pattern":"^\\d+$","prefix":"mdm","uri_format":"https://medical-data-models.org/forms/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MDM","uri_format":"http://identifiers.org/mdm/$1"},"edam":null,"re3data":{"description":"MDM-Portal (Medical Data Models) is a meta-data registry for creating, analyzing, sharing and reusing medical forms. It serves as an infrastructure for academic (non-commercial) medical research to contribute a solution to this problem. It contains forms in the system-independent CDISC Operational Data Model (ODM) format with more than 500,000 data-elements. The Portal provides numerous core data sets, common data elements or data standards, code lists and value sets. This enables researchers to view, discuss, download and export forms in most common technical formats such as PDF, CSV, Excel, SQL, SPSS, R, etc.","homepage":"https://medical-data-models.org/","name":"Portal of Medical Data Models","prefix":"r3d100013816","prefix_synonyms":["MDM Portal"],"xrefs":{"doi":"10.17616/R31NJN5K"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"meddra":{"prefix":"meddra","name":"Medical Dictionary for Regulatory Activities Terminology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MEDDRA","bartoc":"1237","biocontext":"MEDDRA","bioportal":"MEDDRA","fairsharing":"FAIRsharing.ad3137","hl7":"2.16.840.1.113883.6.163","integbio":"nbdc02564","miriam":"meddra","n2t":"meddra","togoid":"Meddra","wikidata":"P3201","wikidata.entity":"Q1539689"},"synonyms":["MEDRA","MeDRA","MedDRA","Medical Dictionary for Regulatory Activities"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"10961570","doi":"10.1016/s1386-5056(00)00062-9","pmc":null,"title":"The use of a medical dictionary for regulatory activities terminology (MedDRA) in prescription-event monitoring in Japan (J-PEM)","year":2000},{"pubmed":"10082069","doi":"10.2165/00002018-199920020-00002","pmc":null,"title":"The medical dictionary for regulatory activities (MedDRA)","year":1999},{"pubmed":"10082069","doi":"10.2165/00002018-199920020-00002","pmc":null,"title":"The medical dictionary for regulatory activities (MedDRA)","year":1999},{"pubmed":"10961570","doi":"10.1016/s1386-5056(00)00062-9","pmc":null,"title":"The use of a medical dictionary for regulatory activities terminology (MedDRA) in prescription-event monitoring in Japan (J-PEM)","year":2000}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).","examples":["10015919"],"extras":{"miriam_id":"00000563","namespaceEmbeddedInLui":false},"homepage":"http://bioportal.bioontology.org/ontologies/MEDDRA","name":"MedDRA","pattern":"^\\d+$","prefix":"meddra","status":"active","uri_format":"http://purl.bioontology.org/ontology/MEDDRA/$1"},"n2t":{"description":"The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).","examples":["10015919"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://bioportal.bioontology.org/ontologies/MEDDRA","name":"MedDRA through BioPortal","pattern":"^\\d+$","prefix":"meddra","uri_format":"http://purl.bioontology.org/ontology/MEDDRA/$1"},"prefixcommons":null,"wikidata":{"description":"identifier in the Medical Dictionary for Regulatory Activities","examples":["10000304","10014021","10067326"],"name":"Medical Dictionary for Regulatory Activities ID","prefix":"P3201","uri_format":"https://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1","uri_format_rdf":"http://purl.bioontology.org/ontology/MDRFRE/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"mssohelp@meddra.org","name":"MedDRA MSSO"},"description":"MedDRA is an international medical terminology with an emphasis on use for data entry, retrieval, analysis, and display. It applies to all phases of drug development, excluding animal toxicology, and to the health effects and malfunction of devices. An appendix includes concept descriptions which describe how a medical concept is interpreted, used, and classified within the MedDRA terminology. It is not intended as a medical definition. The concept descriptions are intended to aid the consistent and accurate use of MedDRA in coding, retrieval, and analysis.","homepage":"https://www.meddra.org/","name":"Medical Dictionary for Regulatory Activities Terminology (MedDRA)","prefix":"MEDDRA","publications":[{"url":"https://www.meddra.org/msso-presentations"}],"version":"28.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"Medical Dictionary for Regulatory Activities Terminology (MedDRA)","homepage":"http://www.meddramsso.com/MSSOWeb/contact_us/index.htm","name":"Medical Dictionary for Regulatory Activities Terminology (MedDRA)","prefix":"MEDDRA","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"MedDRA is a multilingual terminology allowing most users to operate in their native languages. MedDRA can be used to analyse individual medical events (e.g., “Influenza”) or issues involving a system, organ or etiology (e.g., infections) using its hierarchical structure. MedDRA can be used for signal detection and monitoring of clinical syndromes whose symptoms encompass numerous systems or organs using its multi-axial hierarchy or through the special feature of Standardised MedDRA Queries. The ability to communicate adverse event data is another strength of MedDRA and has lead to MedDRA being an integral part of the ICH e-submission standards: eCTD (ICH M8) and ICSRs (ICH E2B).","homepage":"http://www.meddra.org/","keywords":["Preclinical Studies","Biomedical Science","Medicine","disease"],"license":{"url":"http://www.meddra.org/subscription/special-licences"},"name":"Medical Dictionary for Regulatory Activities Terminology","prefix":"FAIRsharing.ad3137","publications":[{"doi":"10.2165/00002018-199920020-00002","pubmed":"10082069","title":"The medical dictionary for regulatory activities (MedDRA)","url":"http://doi.org/10.2165/00002018-199920020-00002","year":1999},{"doi":"10.1016/s1386-5056(00)00062-9","pubmed":"10961570","title":"The use of a medical dictionary for regulatory activities terminology (MedDRA) in prescription-event monitoring in Japan (J-PEM)","url":"http://doi.org/10.1016/s1386-5056(00)00062-9","year":2000}],"short_names":["MedDRA"]},"biocontext":{"prefix":"MEDDRA","uri_format":"http://purl.bioontology.org/ontology/MEDDRA/$1"},"edam":null,"re3data":null,"hl7":{"description":"MedDRA is a five-level hierarchy of terms. MedDRA was developed as an ICH initiative and is maintained and distributed by the MedDRA Maintenance and Support Services Organization (MSSO).\tVersions \u0013 Versions are released twice per year and are identified by 2 numbers separated by a decimal point (e.g., 7.0, 7.1, 8.0, and 8.1). \u001c.0\u001d releases may contain changes to the hierarchy. \u001c.1\u001d releases will only contain additions, moves, and modifications of medical concept terms (Preferred Terms) and coding level terms (Lowest Level Terms).\tConcepts \u0013 Concepts are represented by a MedDRA code and a MedDRA term name. The MedDRA code is an eight digit numeric code. MedDRA codes are unique and are never reused. The MedDRA term name is a 100 character alphanumeric field used to describe the concept or term.\tHierarchies \u0013 MedDRA is structured as a five level hierarchy. System Organ Classes (SOCs) are the broadest terms (e.g., Cardiac disorders, Investigations). The lowest level of the terminology is the Lowest Level Term (LLT) level. There are 26 SOCs and over 60,000 LLTs","extras":{"organization":"MedDRA MSSO/ Northrop Grumman,MedDRA MSSO/ Northrop Grumman"},"homepage":"www.meddramsso.com","name":"MedDRA","preferred_prefix":"mdr","prefix":"2.16.840.1.113883.6.163","status":"active"},"bartoc":{"description":"In the late 1990s, the International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH) developed MedDRA, a rich and highly specific standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. ICH’s powerful tool, MedDRA is available to all for use in the registration, documentation and safety monitoring of medical products both before and after a product has been authorised for sale. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. Today, its growing use worldwide by regulatory authorities, pharmaceutical companies, clinical research organisations and health care professionals allows better global protection of patient health.","homepage":"http://www.meddra.org/","name":"MedDRA","prefix":"1237","xrefs":{"wikidata":"Q1539689"}},"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of medical products. It is provided in many languages, which are Chinese, Czech, Dutch, French, German, Hungarian, Italian, Japanese, Korean, Portuguese, Portuguese - Brazilian, Russian, and Spanish in addition to English Master.","examples":["10008033","10027710","10062506","10040493","10013611","10065857","10063143","10022599","10042342","10047883"],"keywords":["Phenotype"],"name":"MedDRA","pattern":"^(?:(?:MedDRA|meddra):)?(?\\d+)$","prefix":"Meddra","uri_format":"http://identifiers.org/meddra/$1","xrefs":{"integbio":"nbdc02564"}},"integbio":{"description":"MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of medical products. It is provided in many languages, which are Chinese, Czech, Dutch, French, German, Hungarian, Italian, Japanese, Korean, Portuguese, Portuguese - Brazilian, Russian, and Spanish in addition to English Master.","homepage":"https://www.meddra.org/","keywords":["Drug","Health/Disease","Ontology/Terminology/Nomenclature"],"name":"Medical Dictionary for Regulatory Activities","prefix":"nbdc02564","short_names":["MedDRA"],"status":"active","xrefs":{"fairsharing":"FAIRsharing.ad3137"}},"pathguide":null,"tib":null},"medgen":{"prefix":"medgen","name":null,"description":null,"pattern":"^(CN)?\\d{2,7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Megan S. Kane","orcid":"0000-0001-5493-2602","email":"megan.kane@nih.gov","github":"kanems"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"760050","example_extras":["610","CN970821"],"example_decoys":["N1849341","C1849341"],"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MedGen","biolink":"medgen","integbio":"nbdc02560","miriam":"medgen","n2t":"medgen","ncbi":"MedGen","togoid":"Medgen"},"synonyms":["medgen.uid"],"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1567"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.","examples":["760050"],"extras":{"miriam_id":"00000594","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/medgen/","name":"MedGen","pattern":"^[CN]*\\d{4,7}$","prefix":"medgen","status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/medgen/$1"},"n2t":{"description":"MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.","examples":["760050"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/medgen/","name":"MedGen at NCBI","pattern":"^[CN]*\\d{4,7}$","prefix":"medgen","uri_format":"https://www.ncbi.nlm.nih.gov/medgen/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["C0010674"],"homepage":"https://www.ncbi.nlm.nih.gov/medgen","name":"Human Medical Genetics","prefix":"MedGen"},"uniprot":null,"biolink":{"prefix":"medgen","uri_format":"https://www.ncbi.nlm.nih.gov/medgen/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MedGen","uri_format":"http://www.ncbi.nlm.nih.gov/medgen/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, ClinVar and other sources into concepts, and assigns a unique identifier and a preferred name and symbol. Each entry includes names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. This database provides links to such resources as: Genetic tests registered in the NIH Genetic Testing Registry (GTR), GeneReviews, ClinVar, OMIM, Related genes, Disorders with similar clinical features, Medical and research literature, Practice guidelines, Consumer resources, Ontologies such as HPO and ORDO.","examples":["C0264897","C0028860","C0018818","C1848392","C0006389","C0020517","C0000364","CN227118","CN203043","CN292950"],"keywords":["Phenotype"],"name":"MedGen","pattern":"^(?CN?\\d{4,7})$","prefix":"Medgen","uri_format":"http://identifiers.org/medgen/$1","xrefs":{"integbio":"nbdc02560"}},"integbio":{"description":"MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, ClinVar and other sources into concepts, and assigns a unique identifier and a preferred name and symbol. Each entry includes names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. This database provides links to such resources as:\nGenetic tests registered in the NIH Genetic Testing Registry (GTR), GeneReviews, ClinVar, OMIM, Related genes, Disorders with similar clinical features, Medical and research literature, Practice guidelines, Consumer resources, Ontologies such as HPO and ORDO.","homepage":"https://www.ncbi.nlm.nih.gov/medgen/","keywords":["Genome/Gene","Health/Disease","Phenotype","Ontology/Terminology/Nomenclature","Bibliography/Documents"],"name":"MedGen","prefix":"nbdc02560","status":"active"},"pathguide":null,"tib":null},"medgen.cid":{"prefix":"medgen.cid","name":"MedGen Concept Unique ID","description":"This vocabulary is used internally inside MedGen to assign temporary identifiers to terms that will later get put in UMLS. Mappings between MedGen, MedGen CIDs, and UMLS can be found [here](https://ftp.ncbi.nlm.nih.gov/pub/medgen/MedGenIDMappings.txt.gz).","pattern":"^CN\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/medgen","repository":null,"contact":{"name":"Megan S. Kane","orcid":"0000-0001-5493-2602","email":"megan.kane@nih.gov","github":"kanems"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CN970821","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1567"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1576,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mediadive.ingredient":{"prefix":"mediadive.ingredient","name":"MediaDive Ingredient","description":"The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]","pattern":"^\\d+$","uri_format":"https://mediadive.dsmz.de/ingredients/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mediadive.dsmz.de/solutions","repository":null,"contact":{"name":"Jörg Overmann","orcid":"0000-0003-3909-7201","email":"joerg.overmann@dsmz.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"13","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":941,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mediadive.medium":{"prefix":"mediadive.medium","name":"MediaDive Medium","description":"The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]","pattern":"^\\d+\\w?$","uri_format":"https://mediadive.dsmz.de/medium/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mediadive.dsmz.de/media","repository":null,"contact":{"name":"Jörg Overmann","orcid":"0000-0003-3909-7201","email":"joerg.overmann@dsmz.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"77","example_extras":["54b"],"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mediadive.medium"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":941,"logo":null,"miriam":{"description":"MediaDive is a manually curated collection of cultivation media and growth conditions. This namespace specifically references mediums.","examples":["1011c"],"extras":{"miriam_id":"00001078","namespaceEmbeddedInLui":false},"homepage":"https://www.dsmz.de/","name":"MediaDive mediums","pattern":"^[A-Z]?[0-9]{1,5}[a-z]?$","prefix":"mediadive.medium","status":"active","uri_format":"https://mediadive.dsmz.de/medium/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mediadive.solution":{"prefix":"mediadive.solution","name":"MediaDive Solution","description":"The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]","pattern":"^S\\d+$","uri_format":"https://mediadive.dsmz.de/solutions/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mediadive.dsmz.de/solutions","repository":null,"contact":{"name":"Jörg Overmann","orcid":"0000-0003-3909-7201","email":"joerg.overmann@dsmz.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"S6","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":941,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"medlineplus":{"prefix":"medlineplus","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"medlineplus.fp","name":"MedLine Plus home page","description":"First-party version of medline plus.","homepage":"https://medlineplus.gov","uri_format":"https://medlineplus.gov/ency/article/$1.htm","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MEDLINEPLUS","biocontext":"MEDLINEPLUS","bioportal":"MEDLINEPLUS","fairsharing":"FAIRsharing.bf8dsb","hl7":"2.16.840.1.113883.6.173","integbio":"nbdc00836","miriam":"medlineplus","n2t":"medlineplus"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.","examples":["002804"],"extras":{"miriam_id":"00000476","namespaceEmbeddedInLui":false},"homepage":"http://www.nlm.nih.gov/medlineplus/","name":"MedlinePlus","pattern":"^\\d+$","prefix":"medlineplus","status":"active","uri_format":"http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"},"n2t":{"description":"MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.","examples":["002804"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.nlm.nih.gov/medlineplus/","name":"MedlinePlus at NCBI","pattern":"^\\d+$","prefix":"medlineplus","uri_format":"http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"custserv@nlm.nih.gov","name":"NLM Customer Service"},"description":"MedlinePlus Health Topics;National Library of Medicine;June 14, 2008;Bethesda, MD","homepage":"http://medlineplus.gov/","name":"MedlinePlus Health Topics","prefix":"MEDLINEPLUS","publications":[{"url":"http://www.nlm.nih.gov/medlineplus/xmldescription.html"}],"version":"20250624"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"MedlinePlus Health Topics;National Library of Medicine;June 14, 2008;Bethesda, MD","homepage":"http://www.nlm.nih.gov/medlineplus/xmldescription.html","name":"MedlinePlus Health Topics","prefix":"MEDLINEPLUS","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"This resource provides information on the symptoms, causes, treatment and prevention for a wide range of diseases, illnesses, health conditions and wellness issues. MedlinePlus health topics are regularly reviewed, and links are updated daily.","homepage":"https://medlineplus.gov/xmldescription.html","keywords":["Biomedical Science","Health Science","Medicine","disease"],"license":{"url":"https://www.usa.gov/government-works"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBaEFGIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--611e307f6ed5ae6a6f06017953d913cdcacc490b/Screenshot%20from%202024-10-04%2017-49-50.png?disposition=inline","name":"MedlinePlus Health Topics","prefix":"FAIRsharing.bf8dsb","short_names":["MEDLINEPLUS"]},"biocontext":{"prefix":"MEDLINEPLUS","uri_format":"http://identifiers.org/medlineplus/$1"},"edam":null,"re3data":null,"hl7":{"description":"MedlinePlus Health Topics. Bethesda (MD): National Library of Medicine, August 14, 2004.","name":"MedlinePlus","preferred_prefix":"MEDLINEPLUS","prefix":"2.16.840.1.113883.6.173","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MedlinePlus is the patient-forward site of the US NIH National Library of Medicine. The database contains information on a variety of health topics, from diseases to drugs, presented for the general public. The database is curated and updated by NLM staff and seeks to provide users with straightforward, unbiased explanations and information.","homepage":"http://www.nlm.nih.gov/medlineplus/","keywords":["Health/Disease","Bibliography/Documents"],"name":"MedlinePlus","prefix":"nbdc00836","status":"active"},"pathguide":null,"tib":null},"meno":{"prefix":"meno","name":"Mid-level Energy Ontology","description":"The midlevel energy ontology (MENO) is a BFO-based midlevel ontology. It comprises the concepts for energy qualities, energy-based dispositions and energy-driven transformation and transfer processes and their interrelations. It has the goal to provide an upper level structure for these concepts for energy-related domain ontologies.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/stap-m/midlevel-energy-ontology","repository":"https://github.com/stap-m/midlevel-energy-ontology","contact":{"name":"Mirjam Stappel","orcid":"0000-0003-3722-5564","email":"mirjam.stappel@uni-osnabrueck.de","github":"stap-m"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01013","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/stap-m/midlevel-energy-ontology/raw/refs/heads/dev/ontology/src/midlevel-energy.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://www.utwente.nl/en/eemcs/fois2024/resources/papers/stappel-neuhaus-representing-energy-in-the-midlevel-energy-ontology-meno.pdf"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merckindex.monograph":{"prefix":"merckindex.monograph","name":"Merck Index Monograph","description":"A semantic space of small molecules","pattern":null,"uri_format":"https://merckindex.rsc.org/monographs/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://merckindex.rsc.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"M2871","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1554,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merckindex.reaction":{"prefix":"merckindex.reaction","name":"Merck Index Reaction","description":"Chemical reactions in the Merck Index. This website doesn't exist anymore","pattern":"^r\\d+$","uri_format":"https://www.rsc.org/Merck-Index/reaction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://merckindex.rsc.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"r376","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":["rxno"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1554,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merops.clan":{"prefix":"merops.clan","name":"MEROPS Clan","description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.","pattern":null,"uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ebi.ac.uk/merops","repository":null,"contact":{"name":"Neil D Rawlings","orcid":"0000-0001-5557-7665","email":"ndr@ebi.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IA","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"merops","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/issues/439"],"publications":[{"pubmed":"29145643","doi":"10.1093/nar/gkx1134","pmc":"PMC5753285","title":"The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database","year":2018}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merops.entry":{"prefix":"merops.entry","name":"MEROPS Entry","description":null,"pattern":"^[SCTAGMNUIX]{1,2}\\d{2}\\.([AB]\\d{2}|\\d{3})$","uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Neil D Rawlings","orcid":"0000-0001-5557-7665","email":"ndr@ebi.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"I31.952","example_extras":["S01.001","XM02.001"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MEROPS.INHIBITOR","edam":"2629","go":"MEROPS","miriam":"merops.inhibitor","n2t":"merops.inhibitor","prefixcommons":"merops","uniprot":"DB-0059"},"synonyms":["merops.inhibitor"],"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/issues/439"],"publications":[{"pubmed":"29145643","doi":"10.1093/nar/gkx1134","pmc":"PMC5753285","title":"The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database","year":2018},{"pubmed":"26455268","doi":"10.1016/j.biochi.2015.10.003","pmc":"PMC4756867","title":"Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation","year":2015},{"pubmed":"26527717","doi":"10.1093/nar/gkv1118","pmc":"PMC4702814","title":"Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors","year":2015},{"pubmed":"22086950","doi":"10.1093/nar/gkr987","pmc":"PMC3245014","title":"MEROPS: the database of proteolytic enzymes, their substrates and inhibitors","year":2011},{"pubmed":"17991683","doi":"10.1093/nar/gkm954","pmc":"PMC2238837","title":"MEROPS: the peptidase database","year":2007},{"pubmed":"9847218","doi":"10.1093/nar/27.1.325","pmc":"PMC148173","title":"MEROPS: the peptidase database","year":1999},{"pubmed":"8439290","doi":"10.1042/bj2900205","pmc":"PMC1132403","title":"Evolutionary families of peptidases","year":1993}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.","examples":["I31.952"],"extras":{"miriam_id":"00000491","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/merops","name":"MEROPS Inhibitor","pattern":"^I\\d{2}\\.\\d{3}$","prefix":"merops.inhibitor","status":"active","uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"},"n2t":{"description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.","examples":["I31.952"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://merops.sanger.ac.uk/index.htm","name":"MEROPS Inhibitor at Sanger Institute","pattern":"^I\\d{2}\\.\\d{3}$","prefix":"merops.inhibitor","uri_format":"http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$1"},"prefixcommons":{"description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.","examples":["S01.001"],"homepage":"http://merops.sanger.ac.uk/","keywords":["protein","enzyme","structure"],"license":{"name":"http://merops.sanger.ac.uk/about/availability.shtml","url":"http://merops.sanger.ac.uk/about/availability.shtml"},"name":"MEROPS - the Peptidase Database","pattern":"^S\\d{2}\\.\\d{3}$","prefix":"merops","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/merops:$1"}],"publications":[{"pubmed":"17991683"}],"uri_format":"http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.ebi.ac.uk/merops/","name":"MEROPS peptidase database","prefix":"MEROPS","uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.ebi.ac.uk/merops/","keywords":["Protein family/group databases"],"name":"MEROPS protease database","prefix":"DB-0059","publications":[{"doi":"10.1093/nar/gkx1134","pubmed":"29145643"}],"short_names":["MEROPS"],"uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MEROPS.INHIBITOR","uri_format":"http://identifiers.org/merops.inhibitor/$1"},"edam":{"description":"Unique identifier of a peptidase enzyme from the MEROPS database.","name":"Enzyme ID (MEROPS)","prefix":"2629"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merops.family":{"prefix":"merops.family","name":null,"description":null,"pattern":null,"uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Neil D Rawlings","orcid":"0000-0001-5557-7665","email":"ndr@ebi.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"merops","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MEROPS.FAMILY","miriam":"merops.family","n2t":"merops.family"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/issues/439"],"publications":[{"pubmed":"29145643","doi":"10.1093/nar/gkx1134","pmc":"PMC5753285","title":"The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database","year":2018}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.","examples":["S1"],"extras":{"miriam_id":"00000302","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/merops/","name":"MEROPS Family","pattern":"^[SCTAGMNU]\\d+$","prefix":"merops.family","status":"active","uri_format":"https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1"},"n2t":{"description":"The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.","examples":["S1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://merops.sanger.ac.uk/index.htm","name":"Merops Family at Sanger Institute","pattern":"^[SCTAGMNU]\\d+$","prefix":"merops.family","uri_format":"http://merops.sanger.ac.uk/cgi-bin/famsum?family=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MEROPS.FAMILY","uri_format":"http://identifiers.org/merops.family/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"merriamwebster":{"prefix":"merriamwebster","name":"Merriam Webster Dictionary","description":"Online Dictionary","pattern":null,"uri_format":"https://www.merriam-webster.com/dictionary/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.merriam-webster.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"buccal_gland","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["merriam_webster"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1310,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mesh":{"prefix":"mesh","name":"Medical Subject Headings","description":null,"pattern":"^(C|D|Q)\\d+$","uri_format":"https://meshb.nlm.nih.gov/record/ui?ui=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"bioportal.purl","name":"BioPortal","description":"The BioPortal version of MeSH. Should be re-coded to `bioportal`, see https://github.com/biopragmatics/bioregistry/pull/1066.","homepage":"https://bioportal.bioontology.org/ontologies/MESH","uri_format":"http://purl.bioontology.org/ontology/MESH/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"mesh.json-ld","name":"Medical Subject Headings (JSON-LD)","description":"The MeSH version in JSON-LD.","homepage":"http://id.nlm.nih.gov/mesh/","uri_format":"https://id.nlm.nih.gov/mesh/$1.json-ld","first_party":true,"publications":null,"example":null,"status":null},{"code":"mesh.ttl","name":"Medical Subject Headings (TTL)","description":"The MeSH version in TTL.","homepage":"http://id.nlm.nih.gov/mesh/","uri_format":"https://id.nlm.nih.gov/mesh/$1.ttl","first_party":true,"publications":null,"example":null,"status":null},{"code":"mesh.n3","name":"Medical Subject Headings (N3)","description":"The MeSH version in N3.","homepage":"http://id.nlm.nih.gov/mesh/","uri_format":"https://id.nlm.nih.gov/mesh/$1.n3","first_party":true,"publications":null,"example":null,"status":null},{"code":"mesh.2008","name":"Legacy 2008 MeSH URL","description":"Appears in birnlex","homepage":"http://id.nlm.nih.gov/mesh/","uri_format":"http://www.nlm.nih.gov/cgi/mesh/2008/MB_cgi?field=uid&term=$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"C063233","example_extras":["D000001","Q000473"],"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/mesh/mesh.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/mesh/mesh.obo","download_json":"https://w3id.org/biopragmatics/resources/mesh/mesh.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MESH","bartoc":"391","biocontext":"MESH","biolink":"MESH","bioportal":"MESH","cellosaurus":"MeSH","edam":"1177","fairsharing":"FAIRsharing.qnkw45","go":"MeSH","hl7":"2.16.840.1.113883.6.177","integbio":"nbdc00132","miriam":"mesh","n2t":"mesh","ols":"mesh","prefixcommons":"mesh","togoid":"Mesh","wikidata":"P486","wikidata.entity":"Q199897"},"synonyms":["MESH","MESHA","MESHC","MESHCS","MESHD","MESHPP","MESH_DESCRIPTOR_UI","MESH_SUPPLEMENTAL_RECORD_UI","MSH","MSH2010_2010_02_22","MeSH","meshUID"],"keywords":["metascience","topics"],"domain":"multiple","references":null,"publications":[{"pubmed":"13982385","doi":null,"pmc":"PMC197951","title":"Medical subject headings","year":1963},{"pubmed":"13982385","doi":null,"pmc":null,"title":"Medical subject headings","year":1963},{"pubmed":"20623263","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360776","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360776","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"13982385","doi":null,"pmc":null,"title":"Medical subject headings","year":1963},{"pubmed":"20623263","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360776","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360776","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Roman Baum","orcid":"0000-0001-5246-9351","email":"baum@zbmed.de","github":"rombaum"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://meshb.nlm.nih.gov/public/img/meshLogo.jpg","miriam":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.","examples":["C000100"],"extras":{"miriam_id":"00000560","namespaceEmbeddedInLui":false},"homepage":"https://www.nlm.nih.gov/","name":"MeSH","pattern":"^(C|D|M)\\d{6,9}$","prefix":"mesh","providers":[{"code":"","description":"MeSH Linked Data at National Library of Medicine","homepage":"http://id.nlm.nih.gov/mesh/","name":"MeSH Linked Data at National Library of Medicine","uri_format":"http://id.nlm.nih.gov/mesh/$1"}],"status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/mesh/?term=$1"},"n2t":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.","examples":["C000100"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://id.nlm.nih.gov/mesh/","name":"MeSH Linked Data at National Library of Medicine","pattern":"^(C|D)\\d{6}$","prefix":"mesh","uri_format":"http://id.nlm.nih.gov/mesh/$1"},"prefixcommons":{"description":"MeSH is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity","examples":["D018377"],"extras":{"alt_uri_formats":["http://bioonto.de/mesh.owl#$1"]},"homepage":"http://www.nlm.nih.gov/mesh/meshhome.html","keywords":["classification"],"name":"Medical Subject Headings","pattern":"^[A-Za-z0-9]+$","prefix":"mesh","prefix_synonyms":["msh","bionto.mesh","mesh_cui"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mesh:$1"}],"uri_format_rdf":"http://purl.bioontology.org/ontology/MSH/$1","xrefs":{"bioportal":"1351"}},"wikidata":{"description":"identifier for Descriptor or Supplementary concept in the Medical Subject Headings controlled vocabulary","examples":["C004931","D008180","D014583"],"homepage":"http://www.nlm.nih.gov","name":"MeSH descriptor ID","pattern":"^[CD]\\w{6}(\\w{3}|)$","prefix":"P486","uri_format":"https://meshb.nlm.nih.gov/record/ui?ui=$1","uri_format_rdf":"http://id.nlm.nih.gov/mesh/$1","xrefs":{"miriam":"mesh"}},"wikidata_entity":null,"go":{"homepage":"https://meshb.nlm.nih.gov","name":"Medical Subject Headings","prefix":"MeSH","prefix_synonyms":["MESH","MSH"],"uri_format":"http://id.nlm.nih.gov/mesh/$1"},"obofoundry":null,"bioportal":{"contact":{"email":"custserv@nlm.nih.gov","name":"NLM Customer Service"},"description":"Medical Subject Headings (MeSH);National Library of Medicine; 2011","homepage":"http://www.nlm.nih.gov/mesh","name":"Medical Subject Headings","prefix":"MESH","publications":[{"url":"http://www.nlm.nih.gov/mesh"}],"version":"2026_2025_08_15"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://w3id.org/biopragmatics/resources/mesh/mesh.owl.gz"}],"contact":{"email":"custserv@nlm.nih.gov"},"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.","extras":{"version.iri":"https://w3id.org/biopragmatics/resources/mesh/2025/mesh.ofn"},"homepage":"https://www.nlm.nih.gov/","name":"Medical Subject Headings","prefix":"mesh","uri_format":"http://id.nlm.nih.gov/mesh/$1"},"aberowl":{"description":"Medical Subject Headings (MeSH);National Library of Medicine; 2011","homepage":"http://www.nlm.nih.gov/mesh/meshhome.html","name":"Medical Subject Headings","prefix":"MESH","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"MESH","uri_format":"http://id.nlm.nih.gov/mesh/$1"},"cellosaurus":{"description":"Medical resources","homepage":"https://www.ncbi.nlm.nih.gov/mesh","name":"Medical Subject Headings","prefix":"MeSH","uri_format":"https://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?field=uid&term=$1"},"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Medical Subject Headings (MeSH®) thesaurus is a controlled vocabulary produced by the National Library of Medicine and used for indexing, cataloging, and searching for biomedical and health-related information and documents. MeSH includes the subject descriptors appearing in MEDLINE®/PubMed® and other NLM databases. MeSH provides a consistent way to find content with different terminology but the same concepts. Many synonyms, near-synonyms, and closely related concepts are included as entry terms to help users find the most relevant MeSH descriptor for the concept they are seeking. In NLM's online databases, many terms entered by searchers are automatically mapped to MeSH descriptors to facilitate retrieval of relevant information. Various online systems provide access to MeSH and the vocabulary is available in several NLM online systems. These include the MeSH Browser, containing the complete contents of the MeSH vocabulary; the MeSH Entrez databases, which are designed to assist those searching MEDLINE®/PubMed®; and the UMLS Metathesaurus® with links to many other controlled vocabularies. MeSH Records contain three types: Descriptors, Qualifiers, and Supplementary Concept Records (SCRs).","homepage":"http://www.nlm.nih.gov/mesh/","keywords":["Life Science","Biomedical Science","Bioinformatics","Data retrieval","literature curation"],"license":{"url":"https://uts.nlm.nih.gov/uts/assets/LicenseAgreement.pdf"},"name":"Medical Subject Headings","prefix":"FAIRsharing.qnkw45","publications":[{"pubmed":"13982385","title":"Medical subject headings","url":"https://www.ncbi.nlm.nih.gov/pubmed/13982385","year":1963}],"short_names":["MESH"]},"biocontext":{"prefix":"MESH","uri_format":"http://purl.obolibrary.org/obo/MESH_$1"},"edam":{"description":"An identifier of a concept from the MeSH vocabulary.","name":"MeSH concept","prefix":"1177"},"re3data":null,"hl7":{"description":"Medical Subject Headings (MeSH). Bethesda (MD): National Library of Medicine, 2004","name":"MeSH","preferred_prefix":"MSH","prefix":"2.16.840.1.113883.6.177","status":"active"},"bartoc":{"description":"MeSH is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. MeSH descriptors are arranged in both an alphabetic and a hierarchical structure. At the most general level of the hierarchical structure are very broad headings such as 'Anatomy' or 'Mental Disorders'. More specific headings are found at more narrow levels of the twelve-level hierarchy, such as 'Ankle' and 'Conduct Disorder'. There are 26,142 descriptors in 2011 MeSH. There are also over 177,000 entry terms that assist in finding the most appropriate MeSH Heading, for example, 'Vitamin C' is an entry term to 'Ascorbic Acid'. In addition to these headings, there are more than 199,000 headings called Supplementary Concept Records (formerly Supplementary Chemical Records) within a separate thesaurus. The MeSH thesaurus is used by NLM for indexing articles from 5,400 of the world's leading biomedical journals for the MEDLINE®/PubMED® database. It is also used for the NLM-produced database that includes cataloging of books, documents, and audiovisuals acquired by the Library. Each bibliographic reference is associated with a set of MeSH terms that describe the content of the item. Similarly, search queries use MeSH vocabulary to find items on a desired topic.","homepage":"http://www.nlm.nih.gov/mesh/","name":"Medical Subject Headings","prefix":"391","short_names":["MeSH"],"uri_format":"http://id.nlm.nih.gov/mesh/$1","xrefs":{"wikidata":"Q199897"}},"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"This is a database of keywords representing the content of articles and biological information. The keywords are structured in layers to allow users to find more detailed information or perform abstract searches.","examples":["D006965","C562829","C566582","D010623","D003327","D001715","D000453","D010260","C537322","C563418"],"keywords":["Phenotype"],"name":"MeSH","pattern":"^(?[CD]\\d{6,9})$","prefix":"Mesh","uri_format":"http://id.nlm.nih.gov/mesh/$1","xrefs":{"integbio":"nbdc00132"}},"integbio":{"description":"This is a database of keywords representing the content of articles and biological information. The keywords are structured in layers to allow users to find more detailed information or perform abstract searches.","homepage":"https://www.nlm.nih.gov/mesh/meshhome.html","keywords":["Ontology/Terminology/Nomenclature"],"name":"Medical Subject Headings","prefix":"nbdc00132","publications":[{"pubmed":"20623263"},{"pubmed":"15360776"},{"pubmed":"15360776"}],"short_names":["MeSH"],"status":"active"},"pathguide":null,"tib":null},"mesh.2012":{"prefix":"mesh.2012","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"mesh","provides":"mesh","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MESH.2012","miriam":"mesh.2012","n2t":"mesh.2012"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.","examples":["17186"],"extras":{"miriam_id":"00000270","namespaceEmbeddedInLui":false},"name":"MeSH 2012","pattern":"^[A-Za-z0-9]+$","prefix":"mesh.2012","status":"active"},"n2t":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.","examples":["17186"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.nlm.nih.gov/mesh/","name":"MeSH at National Library of Medicine","pattern":"^[A-Za-z0-9]+$","prefix":"mesh.2012","uri_format":"http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MESH.2012","uri_format":"http://identifiers.org/mesh.2012/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mesh.2013":{"prefix":"mesh.2013","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"mesh","provides":"mesh","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MESH.2013","miriam":"mesh.2013","n2t":"mesh.2013"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.","examples":["17165"],"extras":{"miriam_id":"00000473","namespaceEmbeddedInLui":false},"name":"MeSH 2013","pattern":"^[A-Za-z0-9]+$","prefix":"mesh.2013","status":"active"},"n2t":{"description":"MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.","examples":["17165"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.nlm.nih.gov/mesh/","name":"MeSH 2013 at National Library of Medicine","pattern":"^[A-Za-z0-9]+$","prefix":"mesh.2013","uri_format":"http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MESH.2013","uri_format":"http://identifiers.org/mesh.2013/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mesh.vocab":{"prefix":"mesh.vocab","name":"Medical Subject Headings Vocabulary","description":"Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump","pattern":null,"uri_format":"http://id.nlm.nih.gov/mesh/vocab#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://hhs.github.io/meshrdf/","repository":"https://github.com/HHS/meshrdf","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"term","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"mesh","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://id.nlm.nih.gov/mesh/query"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metabolights":{"prefix":"metabolights","name":"MetaboLights Compound","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METABOLIGHTS","cellosaurus":"MetaboLights","integbio":"nbdc02124","miriam":"metabolights","n2t":"metabolights","re3data":"r3d100011556","wikidata":"P3890"},"synonyms":null,"keywords":null,"domain":"metabolite","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.","examples":["MTBLS1"],"extras":{"miriam_id":"00000380","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metabolights/","name":"MetaboLights","pattern":"^MTBL[CS]\\d+$","prefix":"metabolights","providers":[{"code":"omicsdi","description":"MataboLights through OmicsDI","homepage":"https://www.omicsdi.org/","name":"MataboLights through OmicsDI","uri_format":"https://www.omicsdi.org/dataset/metabolights_dataset/$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/metabolights/$1"},"n2t":{"description":"MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.","examples":["MTBLS1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metabolights/","name":"MetaboLights at EBI","pattern":"^MTBLS\\d+$","prefix":"metabolights","uri_format":"https://www.ebi.ac.uk/metabolights/$1"},"prefixcommons":null,"wikidata":{"description":"identifiers for compound entries in the MetaboLights databases.","examples":["MTBLC16704","MTBLC17170","MTBLC72802"],"name":"MetaboLights Compound ID","pattern":"^MTBLC\\d+$","prefix":"P3890","uri_format":"https://www.ebi.ac.uk/metabolights/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Metabolomic databases","homepage":"https://www.ebi.ac.uk/metabolights/","name":"MetaboLights database for metabolomics experiments and derived information","prefix":"MetaboLights","uri_format":"https://www.ebi.ac.uk/metabolights/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METABOLIGHTS","uri_format":"http://identifiers.org/metabolights/$1"},"edam":null,"re3data":{"description":"MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments.","homepage":"https://www.ebi.ac.uk/metabolights/","license":{"name":"Apache License 2.0"},"name":"MetaboLights","prefix":"r3d100011556","xrefs":{"doi":"10.17616/R31P7N"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MetaboLights is a database is a collection of metabolite structures. This resource provides information on the compound origins,the biological roles, locations and concentrations, as well as experimental data from metabolic experiments. The tools and capabilities of this database is firmly routed in collaborative working worldwie with the metabolomics community such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).","homepage":"https://www.ebi.ac.uk/metabolights/","keywords":["Metabolite","Method","Chemical structure","Bibliography/Documents"],"name":"MTBLS","prefix":"nbdc02124","publications":[{"pubmed":"23109552"},{"pubmed":"23630246"},{"pubmed":"23060735"},{"pubmed":"23683662"},{"pubmed":"27010336"},{"pubmed":"28830114"}],"short_names":["MetaboLights"],"status":"active","xrefs":{"fairsharing":"FAIRsharing.kkdpxe"}},"pathguide":null,"tib":null},"metacyc.compound":{"prefix":"metacyc.compound","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Peter D. Karp","orcid":"0000-0002-5876-6418","email":"pkarp@ai.sri.com","github":"pkarp111"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METACYC.COMPOUND","go":"MetaCyc","integbio":"nbdc00907","miriam":"metacyc.compound","n2t":"metacyc.compound","pathguide":"10","re3data":"r3d100011294"},"synonyms":["MetaCyc"],"keywords":null,"domain":"metabolite","references":null,"publications":[{"pubmed":"26527732","doi":"10.1093/nar/gkv1164","pmc":"PMC4702838","title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases","year":2015},{"pubmed":"24225315","doi":"10.1093/nar/gkt1103","pmc":"PMC3964957","title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases","year":2013},{"pubmed":"22102576","doi":"10.1093/nar/gkr1014","pmc":"PMC3245006","title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases","year":2011},{"pubmed":"17965431","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16381923","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681452","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"11752254","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"10592180","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://metacyc.org/graphics2021/MetaCyc-logo-color.svg","miriam":{"description":"MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.","examples":["CPD-10330"],"extras":{"miriam_id":"00000609","namespaceEmbeddedInLui":false},"homepage":"https://metacyc.org","name":"MetaCyc Compound","pattern":"^[A-Za-z0-9+_.%-:]+$","prefix":"metacyc.compound","status":"active","uri_format":"https://metacyc.org/compound?orgid=META&id=$1"},"n2t":{"description":"MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.","examples":["CPD-10330"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://metacyc.org","name":"MetaCyc Metabolic Pathway Database","pattern":"^CPD-\\d{5}$","prefix":"metacyc.compound","uri_format":"https://metacyc.org/compound?orgid=META&id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://metacyc.org/","name":"Metabolic Encyclopedia of metabolic and other pathways","prefix":"MetaCyc","prefix_synonyms":["METACYC"],"uri_format":"https://biocyc.org/META/NEW-IMAGE?type=NIL&object=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METACYC.COMPOUND","uri_format":"http://identifiers.org/metacyc.compound/$1"},"edam":null,"re3data":{"description":"MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. \nMetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.\nMetaCyc applications include: Online encyclopedia of metabolism, Prediction of metabolic pathways in sequenced genomes, Support metabolic engineering via enzyme database, Metabolite database aids. metabolomics research.","homepage":"https://metacyc.org/","license":{"name":"other"},"name":"MetaCyc","prefix":"r3d100011294","prefix_synonyms":["Metabolic Pathway Database","a member of the BioCyc database collection"],"xrefs":{"doi":"10.17616/R32K7X","nif":"0000-03114","omics":"02718"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MetaCyc is a database of metabolic pathways. The database contains hundreds of curated pathways from hundreds of organisms acorss all kingdoms of life. Users can search by gene, protein, enzyme, or keyword, and explore pathways across related species.","homepage":"http://metacyc.org/","keywords":["Genome/Gene","RNA","Protein","Metabolite","Interaction/Pathway","Image/Movie"],"name":"MetaCyc","prefix":"nbdc00907","publications":[{"pubmed":"17965431"},{"pubmed":"16381923"},{"pubmed":"14681452"},{"pubmed":"11752254"},{"pubmed":"10592180"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000136"}},"pathguide":{"homepage":"http://metacyc.org/","keywords":["BioPAX","SBML"],"name":"Metabolic Pathway Database","prefix":"10","short_names":["MetaCyc"]},"tib":null},"metacyc.pathway":{"prefix":"metacyc.pathway","name":"Metabolic Encyclopedia for Pathway/Genome Databases","description":"MetaCyc is a database of non-redundant, experimentally elucidated metabolic pathways and enzymes. It also contains reactions, chemical compounds, and genes. It stores predominantly qualitative information rather than quantitative data, although it does contain some quantitative data such as enzyme kinetics data.\n\nMetaCyc is [curated](http://www.biocyc.org/glossary.shtml?sid=biocyc14-3908554027#Curation) from the scientific experimental literature according to an [extensive process](https://metacyc.org/MetaCycUserGuide.shtml#TAG:__tex2page_sec_4)]. The majority of pathways occurring in it are from microorganisms and plants. MetaCyc stores thousands of additional enzyme-catalyzed reactions that have not yet been assigned an EC number","pattern":null,"uri_format":"https://metacyc.org/META/NEW-IMAGE?object=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://metacyc.org","repository":null,"contact":{"name":"Peter D. Karp","orcid":"0000-0002-5876-6418","email":"pkarp@ai.sri.com","github":"pkarp111"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"12DICHLORETHDEG-PWY","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"pathway","references":null,"publications":[{"pubmed":"31586394","doi":null,"pmc":null,"title":"The MetaCyc database of metabolic pathways and enzymes - a 2019 update","year":2019},{"pubmed":"23746312","doi":null,"pmc":null,"title":"The challenge of constructing, classifying, and representing metabolic pathways","year":2013},{"pubmed":"21523460","doi":null,"pmc":null,"title":"A survey of metabolic databases emphasizing the MetaCyc family","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Harshad Hegde","orcid":"0000-0002-2411-565X","email":null,"github":"hrshdhgd"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1012,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metacyc.reaction":{"prefix":"metacyc.reaction","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Peter D. Karp","orcid":"0000-0002-5876-6418","email":"pkarp@ai.sri.com","github":"pkarp111"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METACYC.REACTION","biolink":"metacyc.reaction","miriam":"metacyc.reaction","n2t":"metacyc.reaction"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.","examples":["RXN-14904"],"extras":{"miriam_id":"00000610","namespaceEmbeddedInLui":false},"homepage":"https://metacyc.org","name":"MetaCyc Reaction","pattern":"^[A-Za-z0-9+_.%-:]+$","prefix":"metacyc.reaction","status":"active","uri_format":"https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1"},"n2t":{"description":"MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.","examples":["RXN-14904"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://metacyc.org","name":"MetaCyc Metabolic Pathway Database - Reaction","pattern":"^RXN-\\d{5}$","prefix":"metacyc.reaction","uri_format":"https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"metacyc.reaction","uri_format":"http://identifiers.org/metacyc.reaction:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METACYC.REACTION","uri_format":"http://identifiers.org/metacyc.reaction/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metanetx.chemical":{"prefix":"metanetx.chemical","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METANETX.CHEMICAL","miriam":"metanetx.chemical","n2t":"metanetx.chemical"},"synonyms":null,"keywords":null,"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.","examples":["MNXM1723"],"extras":{"miriam_id":"00000567","namespaceEmbeddedInLui":false},"homepage":"https://www.metanetx.org/","name":"MetaNetX chemical","pattern":"^(MNXM\\d+|BIOMASS|WATER)$","prefix":"metanetx.chemical","status":"active","uri_format":"https://www.metanetx.org/chem_info/$1"},"n2t":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.","examples":["MNXM1723"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.metanetx.org/","name":"MetaNetX chemical at SIB Swiss Institute of Bioinformatics","pattern":"^(MNXM\\d+|BIOMASS)$","prefix":"metanetx.chemical","uri_format":"https://www.metanetx.org/chem_info/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METANETX.CHEMICAL","uri_format":"http://identifiers.org/metanetx.chemical/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metanetx.compartment":{"prefix":"metanetx.compartment","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METANETX.COMPARTMENT","miriam":"metanetx.compartment","n2t":"metanetx.compartment"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.","examples":["MNXC15"],"extras":{"miriam_id":"00000569","namespaceEmbeddedInLui":false},"homepage":"https://www.metanetx.org/","name":"MetaNetX compartment","pattern":"^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$","prefix":"metanetx.compartment","status":"active","uri_format":"https://www.metanetx.org/comp_info/$1"},"n2t":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.","examples":["MNXC15"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.metanetx.org/","name":"MetaNetX compartment at SIB Swiss Institute of Bioinformatics","pattern":"^(MNX[CD]\\d+|BOUNDARY)$","prefix":"metanetx.compartment","uri_format":"http://www.metanetx.org/comp_info/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METANETX.COMPARTMENT","uri_format":"http://identifiers.org/metanetx.compartment/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metanetx.reaction":{"prefix":"metanetx.reaction","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METANETX.REACTION","biolink":"METANETX.REACTION","miriam":"metanetx.reaction","n2t":"metanetx.reaction"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.","examples":["MNXR101574"],"extras":{"miriam_id":"00000568","namespaceEmbeddedInLui":false},"homepage":"https://www.metanetx.org/","name":"MetaNetX reaction","pattern":"^(MNXR\\d+|EMPTY)$","prefix":"metanetx.reaction","status":"active","uri_format":"https://www.metanetx.org/equa_info/$1"},"n2t":{"description":"MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.","examples":["MNXR101574"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.metanetx.org/","name":"MetaNetX reaction at SIB Swiss Institute of Bioinformatics","pattern":"^MNXR\\d+$","prefix":"metanetx.reaction","uri_format":"http://www.metanetx.org/equa_info/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"METANETX.REACTION","uri_format":"https://www.metanetx.org/equa_info/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METANETX.REACTION","uri_format":"http://identifiers.org/metanetx.reaction/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metatlas":{"prefix":"metatlas","name":"Metabolic Atlas","description":"A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis.","pattern":"^(MAM\\d{5}\\w)|(MAR\\d{5})$","uri_format":"https://metabolicatlas.org/identifier/MetabolicAtlas/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://metabolicatlas.org","repository":null,"contact":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MAM01234c","example_extras":["MAR11851"],"example_decoys":["MAR11851c"],"license":null,"version":null,"part_of":null,"part_of_database":"metatlas","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"metatlas"},"synonyms":null,"keywords":["chemistry","metabolites","reactions"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":495,"logo":null,"miriam":{"description":"Metabolic Atlas facilitates metabolic modelling by presenting open source genome-scale metabolic models for easy browsing and analysis.","examples":["MAR01234"],"extras":{"miriam_id":"00000959","namespaceEmbeddedInLui":false},"homepage":"https://metabolicatlas.org","name":"Metabolic Atlas","pattern":"^MA[MR]\\d{5}[a-z]?$","prefix":"metatlas","status":"active","uri_format":"https://metabolicatlas.org/identifier/MetabolicAtlas/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metatlas.metabolite":{"prefix":"metatlas.metabolite","name":"Metabolic Atlas Metabolite","description":"A subspace of Metabolic Atlas for compartment-specific records for metabolites.","pattern":"^MAM\\d{5}\\w$","uri_format":"https://metabolicatlas.org/identifier/MetabolicAtlas/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://metabolicatlas.org","repository":null,"contact":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MAM01234c","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"metatlas","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemistry","metabolites"],"domain":"metabolite","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":495,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metatlas.reaction":{"prefix":"metatlas.reaction","name":"Metabolic Atlas Reaction","description":"A subspace of Metabolic Atlas for reactions.","pattern":"^MAR\\d{5}$","uri_format":"https://metabolicatlas.org/identifier/MetabolicAtlas/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://metabolicatlas.org","repository":null,"contact":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MAR11851","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"metatlas","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemistry","reactions"],"domain":"reaction","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mihail Anton","orcid":"0000-0002-7753-9042","email":"mihail.anton@chalmers.se","github":"mihai-sysbio"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":495,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metlin":{"prefix":"metlin","name":"Metabolite and Tandem Mass Spectrometry Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"METLIN","miriam":"metlin","n2t":"metlin","re3data":"r3d100012311"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.","examples":["1455"],"extras":{"miriam_id":"00000322","namespaceEmbeddedInLui":false},"homepage":"http://masspec.scripps.edu/","name":"METLIN","pattern":"^\\d{4}$","prefix":"metlin","status":"deprecated","uri_format":"http://metlin.scripps.edu/metabo_info.php?molid=$1"},"n2t":{"description":"The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.","examples":["1455"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://masspec.scripps.edu/","name":"METLIN at Scripps Center, Molecular Biology and Center for Mass Spectrometry, La Jolla","pattern":"^\\d{4}$","prefix":"metlin","uri_format":"http://metlin.scripps.edu/metabo_info.php?molid=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"METLIN","uri_format":"http://identifiers.org/metlin/$1"},"edam":null,"re3data":{"description":"METLIN represents the largest MS/MS collection of data with the database generated at multiple collision energies and in positive and negative ionization modes. The data is generated on multiple instrument types including SCIEX, Agilent, Bruker and Waters QTOF mass spectrometers.","homepage":"https://metlin.scripps.edu/landing_page.php?pgcontent=mainPage","name":"Metlin","prefix":"r3d100012311","prefix_synonyms":["The original and most comprehensive MS/MS metabolite database"],"xrefs":{"doi":"10.17616/R3RD3W","omics":"02633"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"metnetdb":{"prefix":"metnetdb","name":"Metabolic Network Exchange Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"pathguide":"234","prefixcommons":"metnetdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another.","examples":["377369"],"homepage":"http://www.metnetdb.org/MetNet_db.htm","keywords":["pathway","interaction","regulation","protein","small molecule","DNA","RNA"],"name":"Metabolic Network Exchange","pattern":"^\\d+$","prefix":"metnetdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/metnetdb:$1"}],"uri_format":"http://metnetonline.org/browse_pathway2.php?pthID=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://metnetweb.gdcb.iastate.edu/MetNet_db.htm","keywords":["SBML"],"name":"Metabolic Network Exchange","prefix":"234","short_names":["MetNetDB"]},"tib":null},"metpo":{"prefix":"metpo","name":"Microbial Ecophysiological Trait and Phenotype Ontology","description":"METPO (Microbial Ecophysiological Trait and Phenotype Ontology) provides standardized terms for describing microbial phenotypes, growth characteristics, and culture conditions. It includes classes for growth media, temperature tolerances, pH tolerances, and relationships like \"grows in\" and \"does not grow in\".","pattern":"^\\d+$","uri_format":"https://w3id.org/metpo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/berkeleybop/metpo","repository":"https://github.com/berkeleybop/metpo","contact":{"name":"Mark Andrew Miller","orcid":"0000-0001-9076-6066","email":"mam@lbl.gov","github":"turbomam"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02jbv0t02","wikidata":"Q1133630","name":"Lawrence Berkeley National Laboratory","partnered":false}],"example":"1004005","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/metpo/metpo.owl","download_obo":"https://w3id.org/metpo/metpo.obo","download_json":"https://w3id.org/metpo/metpo.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"METPO","biolink":"METPO","bioportal":"METPO"},"synonyms":null,"keywords":["microbes","ontology","phenotypes"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mark Andrew Miller","orcid":"0000-0001-9076-6066","email":"mam@lbl.gov","github":"turbomam"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"METPO","mastodon":null,"github_request_issue":1794,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"mam@lbl.gov","name":"Mark Andrew Miller"},"description":"An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology","homepage":"https://github.com/berkeleybop/metpo","license":{"name":"CC-BY-4.0"},"name":"METPO","prefix":"METPO","version":"2026-03-24"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/METPO/19/metpo.owl"}],"description":"An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology","homepage":"https://github.com/berkeleybop/metpo","name":"METPO","prefix":"METPO","version":"2026-03-24"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"METPO","uri_format":"https://w3id.org/metpo/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mex":{"prefix":"mex","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"biocontext":"MEX","miriam":"mex","n2t":"mex"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"content has disappeared","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A public place to process, interpret and share GC/MS metabolomics datasets.","examples":["36"],"extras":{"miriam_id":"00000648","namespaceEmbeddedInLui":false},"homepage":"https://www.metabolome-express.org/","name":"Metabolome Express","pattern":"^\\d+$","prefix":"mex","providers":[{"code":"omicsdi","description":"Metabolome Express through OmicsDI","homepage":"https://www.omicsdi.org/","name":"Metabolome Express through OmicsDI","uri_format":"https://www.omicsdi.org/dataset/metabolome_express/MEX$1"}],"status":"active","uri_format":"https://www.metabolome-express.org/datasetview.php?datasetid=$1"},"n2t":{"description":"A public place to process, interpret and share GC/MS metabolomics datasets.","examples":["36"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.metabolome-express.org/","name":"Metabolome Express","pattern":"^\\d+$","prefix":"mex","uri_format":"https://www.metabolome-express.org/datasetview.php?datasetid=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MEX","uri_format":"http://identifiers.org/mex/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mf":{"prefix":"mf","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MF_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000091","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MF","biocontext":"MF","bioportal":"MF","fairsharing":"FAIRsharing.4gm9gt","obofoundry":"mf","ols":"mf","ontobee":"MF","wikidata.entity":"Q55118443"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mf.owl"}],"contact":{"email":"janna.hastings@gmail.com","github":"jannahastings","name":"Janna Hastings","orcid":"0000-0002-3469-4923"},"description":"The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.","domain":"health","homepage":"https://github.com/jannahastings/mental-functioning-ontology","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Mental Functioning Ontology","preferred_prefix":"MF","prefix":"mf","repository":"https://github.com/jannahastings/mental-functioning-ontology","status":"active"},"bioportal":{"contact":{"email":"noreply@bioontology.org","name":"Unknown"},"description":"The Mental Functioning Ontology is an ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA.\\r\\n\\r\\nThe project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies.","homepage":"https://github.com/jannahastings/mental-functioning-ontology/","name":"Mental Functioning Ontology","prefix":"MF","publications":[{"url":"https://github.com/jannahastings/mental-functioning-ontology/"}],"version":"2025-07-08"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mf.owl"}],"description":"The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.","extras":{"version.iri":"http://purl.obolibrary.org/obo/MF/2025-07-08/MF.owl"},"homepage":"https://github.com/jannahastings/mental-functioning-ontology","name":"Mental Functioning Ontology","prefix":"mf","tracker":"https://github.com/jannahastings/mental-functioning-ontology/issues","version":"2025-07-08"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MF/31/mf.owl"}],"description":"The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.","homepage":"https://github.com/jannahastings/mental-functioning-ontology","name":"Mental Functioning Ontology","prefix":"MF"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mental Functioning Ontology","prefix":"MF"},"cheminf":null,"fairsharing":{"contact":{"email":"janna.hastings@uzh.ch","name":"Janna Hastings","orcid":"0000-0002-3469-4923"},"description":"The Mental Functioning Ontology is an ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA. The project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies.","homepage":"https://github.com/jannahastings/mental-functioning-ontology","keywords":["Biomedical Science","Cognitive Neuroscience","cognition","mental health"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Mental Functioning Ontology","prefix":"FAIRsharing.4gm9gt","repository":"https://github.com/jannahastings/mental-functioning-ontology","short_names":["MF"]},"biocontext":{"prefix":"MF","uri_format":"http://purl.obolibrary.org/obo/MF_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mfmo":{"prefix":"mfmo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MFMO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"conflated","name":"OBO PURL Parts","description":"A conflated URL with parts.","homepage":"http://purl.obolibrary.org","uri_format":"http://purl.obolibrary.org/obo/mfmo.owl#MFMO_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000208","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MFMO","biocontext":"MFMO","bioportal":"MFMO","fairsharing":"FAIRsharing.669cnk","obofoundry":"mfmo","ols":"mfmo","ontobee":"MFMO","wikidata.entity":"Q81661681"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfmo.owl"}],"contact":{"email":"druzinsk@uic.edu","github":"RDruzinsky","name":"Robert Druzinsky","orcid":"0000-0002-1572-1316"},"depends_on":["uberon"],"description":"The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.","domain":"anatomy and development","homepage":"https://github.com/rdruzinsky/feedontology","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Mammalian Feeding Muscle Ontology","preferred_prefix":"MFMO","prefix":"mfmo","repository":"https://github.com/RDruzinsky/feedontology","status":"inactive","taxon":{"identifier":"40674","name":"Mammalian","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"druzinsk@uic.edu","name":"Robert Druzinsky"},"description":"An antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.","homepage":"http://feedexp.org/","name":"Mammalian Feeding Muscle Ontology","prefix":"MFMO"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfmo.owl"}],"description":"The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mfmo/2013-11-16/mfmo.owl"},"homepage":"https://github.com/rdruzinsky/feedontology","name":"Mammalian Feeding Muscle Ontology","prefix":"mfmo","tracker":"https://github.com/RDruzinsky/feedontology/issues","version":"2013-11-16"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MFMO/2/mfmo.owl"}],"description":"The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.","homepage":"http://feedexp.org","name":"Mammalian Feeding Muscle Ontology","prefix":"MFMO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mammalian Feeding Muscle Ontology","prefix":"MFMO"},"cheminf":null,"fairsharing":{"description":"This resource is no longer available because its underlying source material is not in scope for FAIRsharing.","homepage":"http://feedexp.org/","keywords":["Anatomy"],"name":"Mammalian Feeding Muscle Ontology","prefix":"FAIRsharing.669cnk","short_names":["MFMO"]},"biocontext":{"prefix":"MFMO","uri_format":"http://purl.obolibrary.org/obo/MFMO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mfo":{"prefix":"mfo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MFO","biocontext":"MFO","bioportal":"MFO","fairsharing":"FAIRsharing.5403x","obofoundry":"mfo","prefixcommons":"mfo","wikidata.entity":"Q114677896"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.","examples":["MFO_0000001"],"homepage":"http://ani.embl.de:8080/mepd/","keywords":["obo","anatomy","development","fish"],"name":"Medaka fish anatomy and development","pattern":"^MFO_\\d+$","prefix":"mfo","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mfo:$1"}],"xrefs":{"bioportal":"1027"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfo.owl"}],"contact":{"email":"henrich@embl.de","github":"ThorstenHen","name":"Thorsten Henrich","orcid":"0000-0002-1548-3290"},"description":"A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.","domain":"anatomy and development","name":"Medaka fish anatomy and development","preferred_prefix":"MFO","prefix":"mfo","status":"inactive","taxon":{"identifier":"8089","name":"Oryzias","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"Thorsten.Henrich@embl-heidelberg.de","name":"Medaka_ontology Administrators"},"description":"A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.","name":"Medaka Fish Anatomy and Development Ontology","prefix":"MFO"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/MFO/14/mfo.obo"}],"description":"A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.","name":"Medaka Fish Anatomy and Development Ontology","prefix":"MFO","version":"unknown"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.","homepage":"http://www.obofoundry.org/ontology/mfo.html","keywords":["Life Science","Anatomy","Developmental Biology","cell cycle"],"name":"Medaka Fish Ontology","prefix":"FAIRsharing.5403x","publications":[{"doi":"10.1093/bioinformatics/bti478","pubmed":"15879458","title":"MEPD: a resource for medaka gene expression patterns","url":"http://doi.org/10.1093/bioinformatics/bti478","year":2005}],"short_names":["MFO"]},"biocontext":{"prefix":"MFO","uri_format":"http://purl.obolibrary.org/obo/MFO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mfoem":{"prefix":"mfoem","name":null,"description":null,"pattern":"^\\d{6}$","uri_format":"http://purl.obolibrary.org/obo/MFOEM_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"000204","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MFOEM","biocontext":"MFOEM","bioportal":"MFOEM","fairsharing":"FAIRsharing.dx30m8","obofoundry":"mfoem","ols":"mfoem","ontobee":"MFOEM","wikidata.entity":"Q55118370"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25937879","doi":"10.1186/2041-1480-5-38","pmc":"PMC4417517","title":"Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference","year":2014},{"pubmed":"25937879","doi":"10.1186/2041-1480-5-38","pmc":null,"title":"Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference","year":2014}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfoem.owl"}],"contact":{"email":"janna.hastings@gmail.com","github":"jannahastings","name":"Janna Hastings","orcid":"0000-0002-3469-4923"},"description":"An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.","domain":"health","homepage":"https://github.com/jannahastings/emotion-ontology","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Emotion Ontology","preferred_prefix":"MFOEM","prefix":"mfoem","repository":"https://github.com/jannahastings/emotion-ontology","status":"active"},"bioportal":{"contact":{"email":"janna.hastings@gmail.com","name":"Janna Hastings"},"description":"An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialisation of the broader Mental Functioning Ontology.","homepage":"https://github.com/jannahastings/emotion-ontology","name":"Emotion Ontology","prefix":"MFOEM","publications":[{"url":"https://github.com/jannahastings/emotion-ontology"}],"version":"2025-07-31"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfoem.owl"}],"description":"An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.","extras":{"version.iri":"http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl"},"homepage":"https://github.com/jannahastings/emotion-ontology","name":"Emotion Ontology","prefix":"mfoem","tracker":"https://github.com/jannahastings/emotion-ontology/issues","version":"2025-07-31"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MFOEM/44/mfoem.owl"}],"description":"An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.","homepage":"https://github.com/jannahastings/emotion-ontology","name":"Emotion Ontology","prefix":"MFOEM"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Emotion Ontology","prefix":"MFOEM"},"cheminf":null,"fairsharing":{"contact":{"email":"janna.hastings@uzh.ch","name":"Janna Hastings","orcid":"0000-0002-3469-4923"},"description":"An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialisation of the broader Mental Functioning Ontology.","homepage":"https://github.com/jannahastings/emotion-ontology","keywords":["Biomedical Science","emotion process","mental health"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Emotion Ontology","prefix":"FAIRsharing.dx30m8","publications":[{"doi":"10.1186/2041-1480-5-38","pubmed":"25937879","title":"Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference","url":"http://doi.org/10.1186/2041-1480-5-38","year":2014}],"repository":"https://github.com/jannahastings/emotion-ontology","short_names":["MFOEM"]},"biocontext":{"prefix":"MFOEM","uri_format":"http://purl.obolibrary.org/obo/MFOEM_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mfomd":{"prefix":"mfomd","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MFOMD_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000046","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MFOMD","biocontext":"MFOMD","bioportal":"MFOMD","fairsharing":"FAIRsharing.q053vb","obofoundry":"mfomd","ols":"mfomd","ontobee":"MFOMD","wikidata.entity":"Q55118439"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfomd.owl"}],"contact":{"email":"janna.hastings@gmail.com","github":"jannahastings","name":"Janna Hastings","orcid":"0000-0002-3469-4923"},"description":"An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable","domain":"health","homepage":"https://github.com/jannahastings/mental-functioning-ontology","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Mental Disease Ontology","preferred_prefix":"MFOMD","prefix":"mfomd","repository":"https://github.com/jannahastings/mental-functioning-ontology","status":"active"},"bioportal":{"contact":{"email":"janna.hastings@gmail.com","name":"Janna Hastings"},"description":"An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable.","homepage":"https://github.com/jannahastings/mental-functioning-ontology","name":"MFO Mental Disease Ontology","prefix":"MFOMD","version":"2020-04-26"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mfomd.owl"}],"description":"The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).","extras":{"version.iri":"http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl"},"homepage":"https://github.com/jannahastings/mental-functioning-ontology","name":"Mental Disease Ontology","prefix":"mfomd","tracker":"https://github.com/jannahastings/mental-functioning-ontology/issues","version":"2020-04-26"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MFOMD/3/mfomd.owl"}],"description":"An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable","homepage":"https://github.com/jannahastings/mental-functioning-ontology","name":"Mental Disease Ontology","prefix":"MFOMD"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mental Disease Ontology","prefix":"MFOMD"},"cheminf":null,"fairsharing":{"description":"The Mental Functioning Ontology (MF) is an ontology for mental functioning, including mental processes such as cognition and traits such as intelligence. There is a module (MFO-MD) which covers mental disorders, within which the IDs are reused from the Disease Ontology as far as is possible. It is developed in the context of the Ontology for General Medical Science (OGMS) and the Basic Formal Ontology (BFO). ","homepage":"https://github.com/jannahastings/mental-functioning-ontology","keywords":["Psychiatry","disease"],"name":"MFO Mental Disease Ontology","prefix":"FAIRsharing.q053vb","short_names":["MFOMD"]},"biocontext":{"prefix":"MFOMD","uri_format":"http://purl.obolibrary.org/obo/MFOMD_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mge":{"prefix":"mge","name":null,"description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"mge","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"ACLAME","edam":"2631","integbio":"nbdc00355","miriam":"mge","n2t":"mge","prefixcommons":"aclame"},"synonyms":["aclame"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19933762","doi":"10.1093/nar/gkp938","pmc":"PMC2808911","title":"ACLAME: a CLAssification of Mobile genetic Elements, update 2010","year":2009},{"pubmed":"14681355","doi":"10.1093/nar/gkh084","pmc":"PMC308818","title":"ACLAME: a CLAssification of Mobile genetic Elements","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.","examples":["2"],"extras":{"miriam_id":"00000063","namespaceEmbeddedInLui":true},"homepage":"http://aclame.ulb.ac.be/","name":"Aclame","pattern":"^mge:\\d+$","prefix":"mge","status":"deprecated","uri_format":"http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1"},"n2t":{"description":"ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.","examples":["2"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://aclame.ulb.ac.be/","name":"Aclame database of mobile genetic elements","pattern":"^mge:\\d+$","prefix":"mge","uri_format":"http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1"},"prefixcommons":{"description":"ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.","examples":["mge:2"],"homepage":"http://aclame.ulb.ac.be","keywords":["genome","gene"],"name":"A CLAssification of Mobile genetic Elements","pattern":"^mge:\\d+$","prefix":"aclame","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/aclame:$1"}],"publications":[{"pubmed":"14681355"}],"uri_format":"http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$1","xrefs":{"miriam":"mge"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"ACLAME","uri_format":"http://identifiers.org/aclame/$1"},"edam":{"description":"An identifier of a mobile genetic element from the Aclame database.","name":"ACLAME","prefix":"2631"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"ACLAME Version 4 is a database of the mobile genetic elements (MGEs) as found in the genomes of all phages, plasmids and transposons known at present - 811 hosts in total.\nInformation on 122,154 proteins, discovered to be present in 2,326 MGEs, is provided.\nThe proteins were grouped in families as follows:\nThe prophages contained 6,822 clusters, the plasmids 18,228 groups, the viruses and prophages 16,057 groups and the viruses 11,503 clusters.\nThe database is in the process of developing a classification system of the functional modules of these MGEs at the protein level, gene level, and higher.\nKeyword and Blast search options are available.\nAn option is also offered whereby host-specific groups of MGEs can be viewed.","homepage":"http://aclame.ulb.ac.be/","keywords":["Genome/Gene","DNA","Protein","Ontology/Terminology/Nomenclature"],"name":"A CLAssification of Mobile genetic Elements","prefix":"nbdc00355","publications":[{"pubmed":"19933762"},{"pubmed":"18238785"},{"pubmed":"18234706"},{"pubmed":"17614261"},{"pubmed":"17482656"},{"pubmed":"17064288"},{"pubmed":"14681355"}],"short_names":["ACLAME"],"status":"inactive","xrefs":{"fairsharing":"biodbcore-000549"}},"pathguide":null,"tib":null},"mgi":{"prefix":"mgi","name":"Mouse Genome Informatics","description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"mgi.marker","name":"MGI Marker","description":"MGI Marker","homepage":"http://www.informatics.jax.org/marker","uri_format":"http://www.informatics.jax.org/marker/MGI:$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Joel Richardson","orcid":"0000-0003-3342-5753","email":"joel.richardson@jax.org","github":"JoelRichardson"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6017782","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/mgi/mgi.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/mgi/mgi.obo.gz","download_json":"https://w3id.org/biopragmatics/resources/mgi/mgi.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MGI","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MGI","cellosaurus":"MGI","edam":"3274","go":"MGI","integbio":"nbdc00568","miriam":"mgi","n2t":"mgi","ncbi":"MGI","prefixcommons":"mgi","re3data":"r3d100010266","rrid":"MGI","uniprot":"DB-0060","wikidata":"P671"},"synonyms":["MGD","MGI"],"keywords":null,"domain":"gene","references":null,"publications":[{"pubmed":"30407599","doi":"10.1093/nar/gky1056","pmc":"PMC6323923","title":"Mouse Genome Database (MGD) 2019","year":2019},{"pubmed":"30335138","doi":"10.1093/nar/gky922","pmc":"PMC6324054","title":"The mouse Gene Expression Database (GXD): 2019 update","year":2019},{"pubmed":"28838066","doi":"10.1093/ilar/ilx013","pmc":"PMC5886341","title":"Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse","year":2017},{"pubmed":"27933520","doi":"10.1007/978-1-4939-6427-7_3","pmc":null,"title":"Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research","year":2017},{"pubmed":"27899570","doi":"10.1093/nar/gkw1040","pmc":"PMC5210536","title":"Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse","year":2016},{"pubmed":"24285300","doi":"10.1093/nar/gkt1225","pmc":"PMC3964950","title":"The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse","year":2013},{"pubmed":"23175610","doi":"10.1093/nar/gks1115","pmc":"PMC3531104","title":"The mouse genome database: genotypes, phenotypes, and models of human disease","year":2012},{"pubmed":"22075990","doi":"10.1093/nar/gkr974","pmc":"PMC3245042","title":"The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse","year":2011},{"pubmed":"15608240","doi":"10.1093/nar/gki113","pmc":"PMC540067","title":"The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology","year":2005},{"pubmed":"8091224","doi":"10.1126/science.8091224","pmc":null,"title":"A database for mouse development","year":1994}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"MGI","mastodon":null,"github_request_issue":null,"logo":"https://www.informatics.jax.org/webshare/images/mgi_logo.gif","miriam":{"description":"The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.","examples":["2442292"],"extras":{"miriam_id":"00000037","namespaceEmbeddedInLui":true},"homepage":"http://www.informatics.jax.org/","name":"Mouse Genome Database","pattern":"^MGI:\\d+$","prefix":"mgi","providers":[{"code":"agr","description":"MGI through the Alliance of Genome Resources","homepage":"https://www.alliancegenome.org","name":"MGI through the Alliance of Genome Resources","uri_format":"https://www.alliancegenome.org/gene/MGI:$1"}],"status":"active","uri_format":"http://www.informatics.jax.org/accession/MGI:$1"},"n2t":{"description":"The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.","examples":["2442292"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://www.informatics.jax.org/","name":"Mouse Genome Informatics Database","pattern":"^MGI:\\d+$","prefix":"mgi","uri_format":"http://www.informatics.jax.org/accession/MGI:$1"},"prefixcommons":{"description":"The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.","examples":["95484"],"homepage":"http://www.informatics.jax.org/","keywords":["expression","phenotype","sequence"],"name":"Mouse genome database (MGD) from Mouse Genome Informatics (MGI)","pattern":"^\\d+$","prefix":"mgi","prefix_synonyms":["mgd"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mgi:$1"}],"publications":[{"pubmed":"15608240"}],"uri_format":"http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:$1"},"wikidata":{"description":"identifier for a gene in the Mouse Genome Informatics database","examples":["MGI:2148705","MGI:95674","MGI:96922"],"homepage":"http://www.informatics.jax.org/","name":"Mouse Genome Informatics ID","pattern":"^MGI:\\d{1,7}$","prefix":"P671","uri_format":"http://www.informatics.jax.org/accession/$1","xrefs":{"wikidata":"Q1951035"}},"wikidata_entity":null,"go":{"homepage":"http://www.informatics.jax.org/","name":"Mouse Genome Informatics","prefix":"MGI"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["MGI:1894891"],"homepage":"http://www.informatics.jax.org/","name":"Mouse Genome Informatics","prefix":"MGI"},"uniprot":{"homepage":"https://www.informatics.jax.org/","keywords":["Organism-specific databases"],"name":"Mouse genome database (MGD) from Mouse Genome Informatics (MGI)","prefix":"DB-0060","publications":[{"doi":"10.1093/genetics/iyae031","pubmed":"38531069"}],"short_names":["MGI"],"uri_format":"https://www.informatics.jax.org/marker/$1"},"biolink":null,"cellosaurus":{"description":"Organism-specific databases","homepage":"http://www.informatics.jax.org","name":"Mouse Genome Database (MGD) from Mouse Genome Informatics","prefix":"MGI","uri_format":"http://www.informatics.jax.org/marker/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MGI","uri_format":"http://www.informatics.jax.org/accession/MGI:$1"},"edam":{"description":"Identifier of an object from the MGI database.","name":"MGI","prefix":"3274"},"re3data":{"description":"MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. The projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, MouseMine Project, MouseCyc Project at MGI","homepage":"https://www.informatics.jax.org/","license":{"name":"Copyrights"},"name":"Mouse Genome Informatics","prefix":"r3d100010266","prefix_synonyms":["MGI"],"xrefs":{"doi":"10.17616/R35P54","nif":"0000-00096","omics":"01656"}},"hl7":null,"bartoc":null,"rrid":{"homepage":"http://www.informatics.jax.org","keywords":["animal model","blast","data analysis service","function","gene","gene expression","genetics","genome","genotype","gold standard","human disease","human health","image","model","molecular neuroanatomy resource","orthology","pathology","pathway","phenotype","recombinase","single nucleotide polymorphism","strain","tumor"],"name":"Mouse Genome Informatics (MGI)","prefix":"MGI","publications":[{"pubmed":"19274630"},{"pubmed":"18428715"}],"xrefs":{"scr":"006460"}},"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MGI is a website of Medaka genome studies. The site has links to various projects, some of which are published papers and some of which can be searched and browsed further to obtain sequence and genome mapping information.","homepage":"http://park.itc.u-tokyo.ac.jp/K-medaka/MGI2/MGI.html","keywords":["Genome/Gene"],"name":"Medaka Genome Initiative","prefix":"nbdc00568","publications":[{"pubmed":"15602912"}],"short_names":["MGI"],"status":"active"},"pathguide":null,"tib":null},"mgnify.analysis":{"prefix":"mgnify.analysis","name":"MGnify Analysis","description":"Analyses of microbiome data within MGnify","pattern":"^MGYA\\d+$","uri_format":"https://www.ebi.ac.uk/metagenomics/analyses/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ebi.ac.uk/metagenomics/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MGYA00002270","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.analysis"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations.","examples":["MGYA00791518"],"extras":{"miriam_id":"00001094","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Analysis","pattern":"^MGYA\\d{8}$","prefix":"mgnify.analysis","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/analyses/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mgnify.proj":{"prefix":"mgnify.proj","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.proj","n2t":"mgnify.proj"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.","examples":["ERP004492"],"extras":{"miriam_id":"00000535","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Project","pattern":"^[A-Z]+[0-9]+$","prefix":"mgnify.proj","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/projects/$1"},"n2t":{"description":"MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.","examples":["ERP004492"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Project","pattern":"^[A-Z]+[0-9]+$","prefix":"mgnify.proj","uri_format":"https://www.ebi.ac.uk/metagenomics/projects/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mgnify.samp":{"prefix":"mgnify.samp","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.samp","n2t":"mgnify.samp"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.","examples":["SRS086444"],"extras":{"miriam_id":"00000510","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Sample","pattern":"^[A-Z]+[0-9]+$","prefix":"mgnify.samp","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/samples/$1"},"n2t":{"description":"The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.","examples":["SRS086444"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Sample","pattern":"^[A-Z]+[0-9]+$","prefix":"mgnify.samp","uri_format":"https://www.ebi.ac.uk/metagenomics/samples/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mgnifygenome":{"prefix":"mgnifygenome","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.genome"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations.","examples":["MGYG000004903"],"extras":{"miriam_id":"00001092","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Genome","pattern":"^MGYG\\d{9}(\\.\\d+)?$","prefix":"mgnify.genome","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/genomes/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mgnifyprotein":{"prefix":"mgnifyprotein","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.protein"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations.","examples":["MGYP000261684433"],"extras":{"miriam_id":"00001098","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Protein","pattern":"^MGYP\\d{12}$","prefix":"mgnify.protein","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/proteins/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mgnifystudy":{"prefix":"mgnifystudy","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mgnify.study"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The free-to-use MGnify platform provides assembly, analysis and archiving of microbiome-derived nucleic acid sequence data from a wide range of biomes, with analysis results providing taxonomic and functional\nprofiles. The platform also includes MGnify Proteins, a database of protein sequences derived from the analysis of metagenomic assemblies, and MGnify Genomes, a resource of biome-specific catalogues of microbial genomes, including extensive functional annotations.","examples":["MGYS00006794"],"extras":{"miriam_id":"00001096","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/metagenomics","name":"MGnify Study","pattern":"^MGYS\\d{8}$","prefix":"mgnify.study","status":"active","uri_format":"https://www.ebi.ac.uk/metagenomics/studies/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mi":{"prefix":"mi","name":null,"description":null,"pattern":"^\\d{4}$","uri_format":"http://purl.obolibrary.org/obo/MI_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0058","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MI","biocontext":"PSIMI","biolink":"MI","bioportal":"MI","fairsharing":"FAIRsharing.8qzmtr","go":"PSI-MI","miriam":"mi","n2t":"psimi","obofoundry":"mi","ols":"mi","ontobee":"MI","prefixcommons":"psi.mi","tib":"mi","wikidata.entity":"Q81661689"},"synonyms":["PSI-MI"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"14755292","doi":"10.1038/nbt926","pmc":null,"title":"The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.","examples":["0308"],"extras":{"miriam_id":"00000109","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/mi","name":"Molecular Interactions Ontology","pattern":"^MI:\\d{4}$","prefix":"mi","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/mi/terms?obo_id=MI:$1"},"n2t":{"description":"The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.","examples":["0308"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols/ontologies/mi","name":"Molecular Interactions Ontology through OLS","pattern":"^MI:\\d{4}$","prefix":"psimi","uri_format":"https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:$1"},"prefixcommons":{"description":"The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.","examples":["MI:0308"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/PSI-MI#$1"]},"homepage":"http://psidev.sf.net","keywords":["obo","interaction","molecule"],"name":"Proteomic Standard Initiative for Molecular Interaction","pattern":"^MI:\\d{4}$","prefix":"psi.mi","prefix_synonyms":["mi","obo.mi"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/psi.mi:$1"}],"publications":[{"pubmed":"14755292"}],"xrefs":{"bioportal":"1040"}},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.psidev.info/","name":"Proteomic Standard Initiative for Molecular Interaction","prefix":"PSI-MI","prefix_synonyms":["MI"]},"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mi.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mi.obo"}],"contact":{"email":"luana.licata@gmail.com","github":"luanalicata","name":"Luana Licata","orcid":"0000-0001-5084-9000"},"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.","domain":"investigations","homepage":"https://github.com/HUPO-PSI/psi-mi-CV","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Molecular Interactions Controlled Vocabulary","preferred_prefix":"MI","prefix":"mi","repository":"https://github.com/HUPO-PSI/psi-mi-CV","status":"active"},"bioportal":{"contact":{"email":"orchard@ebi.ac.uk","name":"Sandra Orchard"},"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.","homepage":"https://github.com/HUPO-PSI/psi-mi-CV","name":"Molecular Interactions","prefix":"MI"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mi.owl"}],"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.","homepage":"https://github.com/HUPO-PSI/psi-mi-CV","name":"Molecular Interactions Controlled Vocabulary","prefix":"mi","tracker":"https://github.com/HUPO-PSI/psi-mi-CV/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MI/135/mi.owl"}],"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.","homepage":"https://github.com/HUPO-PSI/psi-mi-CV","name":"Molecular Interactions Controlled Vocabulary","prefix":"MI"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"MI","uri_format":"http://purl.obolibrary.org/obo/MI_$1"},"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Molecular Interactions Controlled Vocabulary","prefix":"MI"},"cheminf":null,"fairsharing":{"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative. The Molecular Interactions Working group page can be found at http://www.psidev.info/groups/molecular-interactions.","homepage":"http://www.psidev.info/groups/molecular-interactions","keywords":["Life Science","Protein interactions","molecular interaction","protein"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"PSI Molecular Interaction Controlled Vocabulary","prefix":"FAIRsharing.8qzmtr","repository":"https://github.com/HUPO-PSI/psi-mi-CV","short_names":["PSI-MI CV"]},"biocontext":{"prefix":"PSIMI","uri_format":"http://identifiers.org/psimi/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mi.owl"}],"description":"A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.","homepage":"https://github.com/HUPO-PSI/psi-mi-CV","keywords":["Miscellaneous","life sciences, biology"],"name":"Molecular Interactions","prefix":"mi","tracker":"https://github.com/HUPO-PSI/psi-mi-CV/issues"}},"miaa":{"prefix":"miaa","name":"Minimal Information About Anatomy ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://bioconductor.statistik.tu-dortmund.de/packages/3.1/bioc/vignettes/rols/inst/doc/rols.pdf"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"same as MAT","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"miapa":{"prefix":"miapa","name":"Minimum Anformation About a Phylogenetic Analysis Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MIAPA_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000010","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MIAPA","biocontext":"MIAPA","bioportal":"MIAPA","obofoundry":"miapa","ols":"miapa","ontobee":"MIAPA","wikidata.entity":"Q81661690"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16901231","doi":"10.1089/omi.2006.10.231","pmc":"PMC3167193","title":"Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/miapa.owl"}],"contact":{"email":"hilmar.lapp@duke.edu","github":"hlapp","name":"Hilmar Lapp","orcid":"0000-0001-9107-0714"},"description":"An application ontology to formalize annotation of phylogenetic data.","domain":"information","homepage":"http://www.evoio.org/wiki/MIAPA","license":{"name":"CC0 1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"MIAPA Ontology","preferred_prefix":"MIAPA","prefix":"miapa","publications":[{"doi":"10.1089/omi.2006.10.231","title":"Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)"}],"repository":"https://github.com/evoinfo/miapa","status":"active"},"bioportal":{"contact":{"email":"hlapp@drycafe.net","name":"Hilmar Lapp"},"description":"An application ontology to formalize annotation of phylogenetic data according to the emerging Minimum Information About a Phylogenetic Analysis (MIAPA) metadata reporting standard.","homepage":"http://www.evoio.org/wiki/MIAPA","name":"MIAPA Ontology","prefix":"MIAPA"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/miapa.owl"}],"description":"The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.","homepage":"http://www.evoio.org/wiki/MIAPA","name":"Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology","prefix":"miapa","tracker":"https://github.com/evoinfo/miapa/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MIAPA/2/miapa.owl"}],"description":"An application ontology to formalize annotation of phylogenetic data.","homepage":"http://www.evoio.org/wiki/MIAPA","name":"MIAPA Ontology","prefix":"MIAPA"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"MIAPA Ontology","prefix":"MIAPA"},"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIAPA","uri_format":"http://purl.obolibrary.org/obo/MIAPA_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mibig":{"prefix":"mibig","name":"Minimum Information about a Biosynthetic Gene Cluster data repository","description":"MIBiG (Minimum Information about a Biosynthetic Gene Cluster) is a data repository and associated data standard designed to describe biosynthetic gene clusters involved in the production of specialized metabolites. It also stores data on measured biological activities and links to other resources such as NCBI, NPAtlas, and ChEBI. MIBiG is used as a reference database, knowledgebase, and training dataset for machine learning.","pattern":"^BGC\\d{7}$","uri_format":"https://mibig.secondarymetabolites.org/go/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mibig.secondarymetabolites.org","repository":"https://github.com/mibig-secmet/mibig-json","contact":{"name":"Kai Blin","orcid":"0000-0003-3764-6051","email":"kblin@biosustain.dtu.dk","github":"kblin"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BGC0000001","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39657789","doi":"10.1093/nar/gkae1115","pmc":"PMC11701617","title":"MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mitja M. Zdouc","orcid":"0000-0001-6534-6609","email":"zdoucmm@gmail.com","github":"mmzdouc"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1407,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"micro":{"prefix":"micro","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0002999","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MICRO","biocontext":"MICRO","fairsharing":"FAIRsharing.brhpb0","obofoundry":"micro","ols":"micro","ontobee":"MICRO","wikidata.entity":"Q81661692"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27076900","doi":"10.1186/s13326-016-0060-6","pmc":"PMC4830071","title":"MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["mco"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/micro.owl"}],"contact":{"email":"carrine.blank@umontana.edu","github":"carrineblank","name":"Carrine Blank","orcid":"0000-0002-2100-6351"},"description":"An ontology of prokaryotic phenotypic and metabolic characters","domain":"phenotype","homepage":"https://github.com/carrineblank/MicrO","license":{"name":"CC BY 2.0","url":"https://creativecommons.org/licenses/by/2.0/"},"name":"Ontology of Prokaryotic Phenotypic and Metabolic Characters","preferred_prefix":"MICRO","prefix":"micro","repository":"https://github.com/carrineblank/MicrO","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/micro.owl"}],"description":"An ontology of prokaryotic phenotypic and metabolic characters","homepage":"https://github.com/carrineblank/MicrO","name":"Ontology of Prokaryotic Phenotypic and Metabolic Characters","prefix":"micro","tracker":"https://github.com/carrineblank/MicrO/issues","version":"1.5.1"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MICRO/3/micro.owl"}],"description":"An ontology of prokaryotic phenotypic and metabolic characters","homepage":"https://github.com/carrineblank/MicrO","name":"Ontology of Prokaryotic Phenotypic and Metabolic Characters","prefix":"MICRO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Ontology of Prokaryotic Phenotypic and Metabolic Characters","prefix":"MICRO"},"cheminf":null,"fairsharing":{"description":"MicrO is an ontology of microbiological terms, including prokaryotic qualities and processes, material entities (such as cell components), chemical entities (such as microbiological culture media and medium ingredients), and assays. The ontology was built to support the ongoing development of a natural language processing algorithm, MicroPIE (or, Microbial Phenomics Information Extractor). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.","homepage":"https://github.com/carrineblank/MicrO","keywords":["Microbiology","Bioinformatics","assay","cell culture","phenotype"],"license":{"name":"CC BY 2.0","url":"https://creativecommons.org/licenses/by/2.0/"},"name":"Ontology of Prokaryotic Phenotypic and Metabolic Characters","prefix":"FAIRsharing.brhpb0","publications":[{"doi":"10.1186/s13326-016-0060-6","pubmed":"27076900","title":"MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions","url":"http://doi.org/10.1186/s13326-016-0060-6","year":2016}],"repository":"https://github.com/carrineblank/MicrO/issues","short_names":["MicrO"]},"biocontext":{"prefix":"MICRO","uri_format":"http://purl.obolibrary.org/obo/MICRO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"microscope":{"prefix":"microscope","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"MEDIGUE Claudine","orcid":"0000-0002-3905-1054","email":"cmedigue@genoscope.cns.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MICROSCOPE","miriam":"microscope","n2t":"microscope","re3data":"r3d100012928"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"23193269","doi":"10.1093/nar/gks1194","pmc":"PMC3531135","title":"MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.","examples":["5601141"],"extras":{"miriam_id":"00000631","namespaceEmbeddedInLui":false},"homepage":"http://www.genoscope.cns.fr/agc/microscope","name":"MicroScope","pattern":"^\\d+$","prefix":"microscope","status":"active","uri_format":"http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"},"n2t":{"description":"MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.","examples":["5601141"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.genoscope.cns.fr/agc/microscope","name":"MicroScope","pattern":"^\\d+$","prefix":"microscope","uri_format":"http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MICROSCOPE","uri_format":"http://identifiers.org/microscope/$1"},"edam":null,"re3data":{"description":"The MicroScope is a web platform for the analysis of prokaryotic genomes and expert functional annotation.","homepage":"https://mage.genoscope.cns.fr/microscope/","name":"MicroScope","prefix":"r3d100012928","prefix_synonyms":["Microbial Genome Annotation & Analysis Platform"],"xrefs":{"doi":"10.17616/R31NJMGW"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"microsporidia":{"prefix":"microsporidia","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Omar S. Harb","orcid":"0000-0003-4446-6200","email":"oharb@upenn.edu","github":"ramobrah"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MICROSPORIDIA","miriam":"microsporidia","n2t":"microsporidia","prefixcommons":"microsporidia"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19914931","doi":"10.1093/nar/gkp941","pmc":"PMC2808945","title":"EuPathDB: a portal to eukaryotic pathogen databases","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.","examples":["ECU03_0820i"],"extras":{"miriam_id":"00000152","namespaceEmbeddedInLui":false},"homepage":"http://microsporidiadb.org/micro/","name":"MicrosporidiaDB","pattern":"^\\w+$","prefix":"microsporidia","status":"active","uri_format":"http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"},"n2t":{"description":"MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.","examples":["ECU03_0820i"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://microsporidiadb.org/micro/","name":"MicrosporidiaDB at EuPathDB","pattern":"^\\w+$","prefix":"microsporidia","uri_format":"http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"},"prefixcommons":{"description":"MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.","examples":["ECU03_0820i"],"homepage":"http://microsporidiadb.org/micro/","keywords":["eukaryotic","genome"],"name":"MicrosporidiaDB","pattern":"^\\w+$","prefix":"microsporidia","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/microsporidia:$1"}],"publications":[{"pubmed":"19914931"}],"uri_format":"http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MICROSPORIDIA","uri_format":"http://identifiers.org/microsporidia/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"millipore":{"prefix":"millipore","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SCC111","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"Millipore"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.merckmillipore.com/","name":"Merck Millipore (EMD Millipore)","prefix":"Millipore","uri_format":"https://www.merckmillipore.com/catalogue/item/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mimodb":{"prefix":"mimodb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Jian Huang","orcid":"0000-0003-2314-7104","email":"hj@uestc.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIMODB","miriam":"mimodb","n2t":"mimodb","prefixcommons":"mimodb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26503249","doi":"10.1093/nar/gkv1100","pmc":"PMC4702802","title":"BDB: biopanning data bank","year":2015},{"pubmed":"22053087","doi":"10.1093/nar/gkr922","pmc":"PMC3245166","title":"MimoDB 2.0: a mimotope database and beyond","year":2011},{"pubmed":"21079566","doi":"10.3390/molecules15118279","pmc":"PMC6259156","title":"MimoDB: a new repository for mimotope data derived from phage display technology","year":2010},{"pubmed":"22053087","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.","examples":["1"],"extras":{"miriam_id":"00000251","namespaceEmbeddedInLui":false},"homepage":"http://immunet.cn/bdb/","name":"MimoDB","pattern":"^\\d+$","prefix":"mimodb","status":"active","uri_format":"http://immunet.cn/bdb/index.php/mimoset/$1"},"n2t":{"description":"MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.","examples":["1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://immunet.cn/bdb/","name":"BDB at University of Electronic Science and Technology of China","pattern":"^\\d+$","prefix":"mimodb","uri_format":"http://immunet.cn/bdb/index.php/mimoset/$1"},"prefixcommons":{"description":"MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures.","examples":["1"],"homepage":"http://immunet.cn/mimodb/","keywords":["interaction","protein"],"name":"MimoDB","pattern":"^\\d+$","prefix":"mimodb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mimodb:$1"}],"publications":[{"pubmed":"22053087"}],"uri_format":"http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIMODB","uri_format":"http://identifiers.org/mimodb/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"minid":{"prefix":"minid","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MINID","fairsharing":"FAIRsharing.d099fb","miriam":"minid","n2t":"minid"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.","examples":["b97957"],"extras":{"miriam_id":"00000645","namespaceEmbeddedInLui":false},"homepage":"https://fair-research.org","name":"Minimal Viable Identifier","pattern":"^[A-Za-z0-9]+$","prefix":"minid","status":"active","uri_format":"https://hdl.handle.net/hdl:20.500.12582/$1"},"n2t":{"description":"Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.","examples":["b97957"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://minid.bd2k.org","name":"Minimal Identifiers for Transient Data","pattern":"^[A-Za-z0-9]+$","prefix":"minid","uri_format":"http://n2t.net/ark:/57799/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"foster@uchicago.edu","name":"Ian Foster","orcid":"0000-0003-2129-5269"},"description":"A Minimal Viable Identifier (minid) provides a lightweight way of uniquely and unambiguously identifying research data products and is sufficiently simple to create and use to make data easily findable, accessible, interoperable, and reusable (FAIR). ","homepage":"https://github.com/fair-research/minid","keywords":["Subject Agnostic","Data retrieval"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Minimal Viable Identifier","prefix":"FAIRsharing.d099fb","publications":[{"doi":"10.1371/journal.pone.0294883","title":"Correction: Reproducible big data science: A case study in continuous FAIRness","url":"http://dx.doi.org/10.1371/journal.pone.0294883","year":2023},{"doi":"10.1371/journal.pone.0213013","pubmed":"30973881","title":"Reproducible big data science: A case study in continuous FAIRness","url":"http://dx.doi.org/10.1371/journal.pone.0213013","year":2019}],"short_names":["minid"]},"biocontext":{"prefix":"MINID","uri_format":"http://identifiers.org/minid/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"minid.test":{"prefix":"minid.test","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"minid","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"minid.test"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ","examples":["3SBPLMKKVEVR"],"extras":{"miriam_id":"00000707","namespaceEmbeddedInLui":false},"homepage":"https://fair-research.org","name":"MINID Test","pattern":"^[A-Za-z0-9]+$","prefix":"minid.test","status":"active","uri_format":"https://hdl.handle.net/hdl:20.500.12633/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mint":{"prefix":"mint","name":"Molecular Interaction Database","description":null,"pattern":"^\\d{1,7}$","uri_format":"https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mint.bio.uniroma2.it","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6978836","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MINT","banana_peel":"-","deprecated":null,"mappings":{"biocontext":"MINT","edam":"2615","miriam":"mint","n2t":"mint","pathguide":"17","prefixcommons":"mint","re3data":"r3d100010414","uniprot":"DB-0158"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22096227","doi":"10.1093/nar/gkr930","pmc":"PMC3244991","title":"MINT, the molecular interaction database: 2012 update","year":2011},{"pubmed":"19897547","doi":"10.1093/nar/gkp983","pmc":"PMC2808973","title":"MINT, the molecular interaction database: 2009 update","year":2009},{"pubmed":"17135203","doi":"10.1093/nar/gkl950","pmc":"PMC1751541","title":"MINT: the Molecular INTeraction database","year":2006},{"pubmed":"11911893","doi":"10.1016/s0014-5793(01)03293-8","pmc":null,"title":"MINT: a Molecular INTeraction database","year":2002},{"pubmed":"17135203","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22096227","doi":"10.1093/nar/gkr930","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://mint.bio.uniroma2.it/wp-content/uploads/2017/11/cropped-mint-1-e1509905882312.png","miriam":{"description":"The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.","examples":["MINT-10000"],"extras":{"miriam_id":"00000042","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"MINT","pattern":"^MINT\\-\\d{1,7}$","prefix":"mint","providers":[{"code":"","description":"The Molecular INTeraction database (MINT)","homepage":"http://mint.bio.uniroma2.it/mint/","name":"The Molecular INTeraction database (MINT)","uri_format":"https://mint.bio.uniroma2.it/index.php/results-interactions/?id=$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/intact/query/interaction_id:$1"},"n2t":{"description":"The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.","examples":["MINT-7905142"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"MINT subset through IntAct","pattern":"^MINT\\-\\d{1,7}$","prefix":"mint","uri_format":"https://www.ebi.ac.uk/intact/query/interaction_id:$1"},"prefixcommons":{"description":"The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.","examples":["MINT-10000"],"homepage":"http://mint.bio.uniroma2.it/mint/","keywords":["protein","interaction"],"license":{"name":"http://dip.doe-mbi.ucla.edu/dip/termsofuse.html","url":"http://dip.doe-mbi.ucla.edu/dip/termsofuse.html"},"name":"Molecular INTeraction Database","pattern":"^MINT\\-\\d{1,5}$","prefix":"mint","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mint:$1"}],"publications":[{"pubmed":"17135203"}],"uri_format":"http://mint.bio.uniroma2.it/mint/search/interactor.do?queryType=protein&interactorAc=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://mint.bio.uniroma2.it/","keywords":["Protein-protein interaction databases"],"name":"Molecular INTeraction database","prefix":"DB-0158","publications":[{"doi":"10.1093/nar/gkr930","pubmed":"22096227"}],"short_names":["MINT"],"uri_format":"https://mint.bio.uniroma2.it/cgi-bin/protein.py?id=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MINT","uri_format":"http://identifiers.org/mint/$1"},"edam":{"description":"Unique identifier of an entry from the MINT database of protein-protein interactions.","name":"MINT","prefix":"2615"},"re3data":{"description":"Starting September 2013, MINT uses the IntAct database infrastructure to limit the duplication of efforts and to optimise future software development. Data manually curated by the MINT curators can now be accessed from the IntAct homepage at the EBI. Data maintenance and release, MINT PSICQUIC and IMEx services are under the responsibility of the IntAct team, while curation effort will be carried by both groups.\nThe MINT development team now focuses on two new developments: mentha that integrates protein interaction information curated by IMEx databases and SIGNOR a database of logic relationships between human proteins. MINT is a public repository for molecular interactions reported in peer-reviewed journals.IT is a collection of molecular interaction databases that can be used to search for, analyze and graphically display molecular interaction networks and pathways from a wide variety of species. MINT is comprised of separate database components. HomoMINT, is an inferred human protein interatction database. Domino, is database of domain peptide interactions. A new component has been added called VirusMINT that explores the interactions of viral proteins with human proteins.","homepage":"https://mint.bio.uniroma2.it/","license":{"name":"CC"},"name":"Molecular INTeraction Database","prefix":"r3d100010414","prefix_synonyms":["MINT"],"xrefs":{"doi":"10.17616/R38S3B","omics":"02928"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://mint.bio.uniroma2.it/","keywords":["PSI-MI"],"name":"Molecular Interaction Database","prefix":"17","short_names":["MINT"]},"tib":null},"mipmod":{"prefix":"mipmod","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Ramasubbu Sankararamakrishnan","orcid":"0000-0002-8527-5614","email":"rsankar@iitk.ac.in","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIPMOD","miriam":"mipmod","n2t":"mipmod","prefixcommons":"mipmod"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22080560","doi":"10.1093/nar/gkr914","pmc":"PMC3245135","title":"MIPModDB: a central resource for the superfamily of major intrinsic proteins","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.","examples":["HOSAPI0399"],"extras":{"miriam_id":"00000256","namespaceEmbeddedInLui":false},"homepage":"http://bioinfo.iitk.ac.in/MIPModDB","name":"MIPModDB","pattern":"^\\w+$","prefix":"mipmod","status":"active","uri_format":"http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"},"n2t":{"description":"MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.","examples":["HOSAPI0399"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://bioinfo.iitk.ac.in/MIPModDB","name":"MIPModDB at Indian Institute of Technology Kanpur","pattern":"^\\w+$","prefix":"mipmod","uri_format":"http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"},"prefixcommons":{"description":"MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.","examples":["HOSAPI0399"],"homepage":"http://bioinfo.iitk.ac.in/MIPModDB","keywords":["protein","structure"],"name":"MIPModDB","pattern":"^\\w+$","prefix":"mipmod","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mipmod:$1"}],"publications":[{"pubmed":"22080560"}],"uri_format":"http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIPMOD","uri_format":"http://identifiers.org/mipmod/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mir":{"prefix":"mir","name":null,"description":null,"pattern":"^\\d{8}$","uri_format":"https://registry.identifiers.org/registry?query=MIR:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MIR","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIR","miriam":"mir","n2t":"mir"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources.","examples":["00100037"],"extras":{"miriam_id":"00000599","namespaceEmbeddedInLui":true},"homepage":"https://registry.identifiers.org/registry","name":"Identifiers.org Registry","pattern":"^MIR:\\d{8}$","prefix":"mir","status":"active","uri_format":"https://resolver.api.identifiers.org/resolveMirId/MIR:$1"},"n2t":{"description":"The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources.","examples":["00100037"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://identifiers.org/registry","name":"Identifiers.org Registry through EBI","pattern":"^MIR:\\d{8}$","prefix":"mir","uri_format":"https://identifiers.org/registry?query=\"MIR:$1\""},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIR","uri_format":"http://identifiers.org/mir/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mirbase":{"prefix":"mirbase","name":"miRBase pre-miRNA","description":null,"pattern":null,"uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.mirbase.org/","repository":null,"contact":{"name":"Sam Griffiths-Jones","orcid":"0000-0001-6043-807X","email":"sam.griffiths-jones@manchester.ac.uk","github":"samgriffithsjones"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MI0026471","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":"mirbase","provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.owl","download_obo":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.obo","download_json":"https://w3id.org/biopragmatics/resources/mirbase/mirbase.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIRBASE","biolink":"mirbase","edam":"2642","integbio":"nbdc00136","miriam":"mirbase","n2t":"mirbase","ncbi":"miRBase","pathguide":"210","prefixcommons":"mirbase","re3data":"r3d100010566","togoid":"Mirbase","wikidata":"P2870"},"synonyms":null,"keywords":null,"domain":"mirna","references":null,"publications":[{"pubmed":"30423142","doi":"10.1093/nar/gky1141","pmc":"PMC6323917","title":"miRBase: from microRNA sequences to function","year":2019},{"pubmed":"24275495","doi":"10.1093/nar/gkt1181","pmc":"PMC3965103","title":"miRBase: annotating high confidence microRNAs using deep sequencing data","year":2013},{"pubmed":"21037258","doi":"10.1093/nar/gkq1027","pmc":"PMC3013655","title":"miRBase: integrating microRNA annotation and deep-sequencing data","year":2010},{"pubmed":"17991681","doi":"10.1093/nar/gkm952","pmc":"PMC2238936","title":"miRBase: tools for microRNA genomics","year":2007},{"pubmed":"16381832","doi":"10.1093/nar/gkj112","pmc":"PMC1347474","title":"miRBase: microRNA sequences, targets and gene nomenclature","year":2006},{"pubmed":"14681370","doi":"10.1093/nar/gkh023","pmc":"PMC308757","title":"The microRNA Registry","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.mirbase.org/static/images/mirbase-logo_new.png","miriam":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).","examples":["MI0000001"],"extras":{"miriam_id":"00000078","namespaceEmbeddedInLui":false},"homepage":"http://www.mirbase.org/","name":"miRBase Sequence","pattern":"^MI\\d{7}$","prefix":"mirbase","status":"active","uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"},"n2t":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).","examples":["MI0000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.mirbase.org/","name":"miRBase Sequence Database","pattern":"MI\\d{7}","prefix":"mirbase","uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"},"prefixcommons":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. The miRBase Registry continues to provide gene hunters with unique names for novel miRNA genes prior to publication of results. The miRBase Targets database is a new resource of predicted miRNA targets in animals","examples":["MI0000001"],"homepage":"http://www.mirbase.org/","keywords":["RNA","gene"],"name":"miRBase Sequence Database","pattern":"^MI\\d{7}$","prefix":"mirbase","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mirbase:$1"}],"publications":[{"pubmed":"14681370"}],"uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"},"wikidata":{"description":"identifier for pre-miRNAs in miRBase, the reference database for microRNAs","examples":["MI0000472","MI0016867","MI0024976"],"homepage":"http://www.mirbase.org/","name":"miRBase pre-miRNA ID","pattern":"^MI\\d{7}$","prefix":"P2870","uri_format":"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["MI0000681"],"homepage":"http://www.mirbase.org/","name":"miRNA Database","prefix":"miRBase"},"uniprot":null,"biolink":{"prefix":"mirbase","uri_format":"http://identifiers.org/mirbase$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRBASE","uri_format":"http://identifiers.org/mirbase/$1"},"edam":{"description":"Identifier for a gene from the miRBase database.","name":"Gene ID (miRBase)","prefix":"2642"},"re3data":{"description":"The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download. The miRBase Registry provides miRNA gene hunters with unique names for novel miRNA genes prior to publication of results.","homepage":"https://www.mirbase.org/","name":"miRBase","prefix":"r3d100010566","prefix_synonyms":["microRNA database"],"xrefs":{"doi":"10.17616/R30P5K","nif":"0000-03134"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"miRBase is a database for published microRNA sequences and annotations, which include mature miRNA sequences (indicated by miR), and hairpin structures predicted by sequences that are precursors for miRNA (indicated by mir). A variety of search methods can be used, including by keyword, genomic position, cluster, expression data, and user-provided sequences. Furthermore, these sequences and annotations can be downloaded.","examples":["MI0003587","MI0000252","MI0000811","MI0014201","MI0003578","MI0000293","MI0006384","MI0006361","MI0000480","MI0006419"],"keywords":["Transcript"],"name":"miRBase","pattern":"^(?MI\\d{7})$","prefix":"Mirbase","uri_format":"http://identifiers.org/mirbase/$1","xrefs":{"integbio":"nbdc00136"}},"integbio":{"description":"miRBase is a database for published microRNA sequences and annotations, which include mature miRNA sequences (indicated by miR), and hairpin structures predicted by sequences that are precursors for miRNA (indicated by mir). A variety of search methods can be used, including by keyword, genomic position, cluster, expression data, and user-provided sequences. Furthermore, these sequences and annotations can be downloaded.","homepage":"http://mirbase.org/","keywords":["RNA","Sequence"],"name":"microRNA database","prefix":"nbdc00136","short_names":["miRBase"],"status":"active","xrefs":{"fairsharing":"biodbcore-000569"}},"pathguide":{"homepage":"http://www.mirbase.org/index.shtml","name":"microRNA Database","prefix":"210","short_names":["miRBase"]},"tib":null},"mirbase.family":{"prefix":"mirbase.family","name":"miRBase Families","description":"The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.","pattern":null,"uri_format":"http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.mirbase.org/","repository":null,"contact":{"name":"Sam Griffiths-Jones","orcid":"0000-0001-6043-807X","email":"sam.griffiths-jones@manchester.ac.uk","github":"samgriffithsjones"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MIPF0000002","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":"mirbase","provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl","download_obo":"https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.obo","download_json":"https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata.entity":"Q6826947"},"synonyms":["MIRBASE_FAMILY"],"keywords":["gene","mirna"],"domain":"mirna","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.mirbase.org/static/images/mirbase-logo_new.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mirbase.mature":{"prefix":"mirbase.mature","name":"miRBase mature miRNA","description":null,"pattern":null,"uri_format":"http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.mirbase.org/","repository":null,"contact":{"name":"Sam Griffiths-Jones","orcid":"0000-0001-6043-807X","email":"sam.griffiths-jones@manchester.ac.uk","github":"samgriffithsjones"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MIMAT0046872","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":"mirbase","provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.owl","download_obo":"https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.obo","download_json":"https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIRBASE.MATURE","miriam":"mirbase.mature","n2t":"mirbase.mature","prefixcommons":"mirbase.mature","togoid":"MirbaseMature","wikidata":"P2871"},"synonyms":["MIRBASEM"],"keywords":null,"domain":"mirna","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.mirbase.org/static/images/mirbase-logo_new.png","miriam":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.","examples":["MIMAT0000001"],"extras":{"miriam_id":"00000235","namespaceEmbeddedInLui":false},"homepage":"http://www.mirbase.org/","name":"miRBase mature sequence","pattern":"^MIMAT\\d{7}$","prefix":"mirbase.mature","status":"active","uri_format":"http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"},"n2t":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.","examples":["MIMAT0000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.mirbase.org/","name":"miRBase","pattern":"MIMAT\\d{7}","prefix":"mirbase.mature","uri_format":"http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"},"prefixcommons":{"description":"The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.","examples":["MIMAT0000001"],"keywords":["nucleotide","sequence"],"name":"miRBase mature sequence","pattern":"^MIMAT\\d{7}$","prefix":"mirbase.mature","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mirbase.mature:$1"}],"uri_format":"http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"},"wikidata":{"description":"identifier for mature miRNAs in miRBase, the reference database for microRNAs","examples":["MIMAT0000446","MIMAT0000682","MIMAT0003214"],"homepage":"http://www.mirbase.org/","name":"miRBase mature miRNA ID","pattern":"^MIMAT\\d{7}$","prefix":"P2871","uri_format":"http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRBASE.MATURE","uri_format":"http://identifiers.org/mirbase.mature/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"miRBase is a database for published microRNA sequences and annotations, which include mature miRNA sequences (indicated by miR), and hairpin structures predicted by sequences that are precursors for miRNA (indicated by mir). A variety of search methods can be used, including by keyword, genomic position, cluster, expression data, and user-provided sequences. Furthermore, these sequences and annotations can be downloaded.","examples":["MIMAT0000001","MIMAT0015091","MIMAT0000002","MIMAT0015092","MIMAT0000003","MIMAT0000004","MIMAT0000005","MIMAT0015093","MIMAT0000006","MIMAT0000007"],"keywords":["Transcript"],"name":"miRBase mature","pattern":"^(?MIMAT\\d{7})$","prefix":"MirbaseMature","uri_format":"http://identifiers.org/mirbase.mature/$1","xrefs":{"integbio":"nbdc00136"}},"integbio":null,"pathguide":null,"tib":null},"mirex":{"prefix":"mirex","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Wojciech M. Karlowski","orcid":"0000-0002-8086-5404","email":"wmk@amu.edu.pl","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIREX","integbio":"nbdc02064","miriam":"mirex","n2t":"mirex"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26141515","doi":"10.1186/s12870-015-0533-2","pmc":"PMC4490709","title":"mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs","year":2015},{"pubmed":"22013167","doi":"10.1093/nar/gkr878","pmc":"PMC3245179","title":"mirEX: a platform for comparative exploration of plant pri-miRNA expression data","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.","examples":["165a"],"extras":{"miriam_id":"00000329","namespaceEmbeddedInLui":false},"homepage":"http://comgen.pl/mirex/?page=home","name":"mirEX","pattern":"^\\d+(\\w+)?$","prefix":"mirex","status":"active","uri_format":"http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"},"n2t":{"description":"mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.","examples":["165a"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://comgen.pl/mirex/?page=home","name":"mirEX at Adam Mickiewicz University","pattern":"^\\d+(\\w+)?$","prefix":"mirex","uri_format":"http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIREX","uri_format":"http://identifiers.org/mirex/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"mirEX2 is a comprehensive platform for comparative analysis of primary microRNA expression data. RT–qPCR-based gene expression profiles are stored in a universal and expandable database scheme and wrapped by an intuitive user-friendly interface.","homepage":"http://www.comgen.pl/mirex/","keywords":["Genome/Gene","RNA","Expression","Sequence","Localization"],"name":"mirEX","prefix":"nbdc02064","publications":[{"pubmed":"22013167"},{"pubmed":"26141515"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.q3b39v"}},"pathguide":null,"tib":null},"mirgenedb":{"prefix":"mirgenedb","name":"microRNA Gene Database","description":"mircoRNA Gene Database is a collection of animal microRNA genes. This database allows researchers to analyze mircoRNA properties like secondary structure and features in a phylogenetic context.","pattern":"^[a-zA-Z0-9]+(-[a-zA-Z0-9]+)+$","uri_format":"https://mirgenedb.org/browse?qtype=mgid&org=ALL&query=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mirgenedb.org/","repository":null,"contact":{"name":"Bastian Fromm","orcid":"0000-0003-0352-3037","email":"BastianFromm@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Hsa-Let-7-P2a3","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39673268","doi":"10.1093/nar/gkae1094","pmc":"PMC11701709","title":"MirGeneDB 3.0: improved taxonomic sampling, uniform nomenclature of novel conserved microRNA families and updated covariance models","year":2025},{"pubmed":"34850127","doi":"10.1093/nar/gkab1101","pmc":"PMC8728216","title":"MirGeneDB 2.1: toward a complete sampling of all major animal phyla","year":2022},{"pubmed":"31598695","doi":"10.1093/nar/gkz885","pmc":"PMC6943042","title":"MirGeneDB 2.0: the metazoan microRNA complement","year":2020},{"pubmed":"26473382","doi":"10.1146/annurev-genet-120213-092023","pmc":"PMC4743252","title":"A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome","year":2015}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Nalika Palayoor","orcid":"0009-0008-8406-631X","email":"palayoor.n@northeastern.edu","github":"nalikapalayoor"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1393,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"miriam":{"prefix":"miriam","name":null,"description":null,"pattern":"^[0-9a-z_:\\.-]+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"miriam","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"edam":"1162","miriam":"identifiers.namespace"},"synonyms":["identifiers.namespace"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22140103","doi":"10.1093/nar/gkr1097","pmc":"PMC3245029","title":"Identifiers.org and MIRIAM Registry: community resources to provide persistent identification","year":2011},{"pubmed":"18078503","doi":"10.1186/1752-0509-1-58","pmc":"PMC2259379","title":"MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology","year":2007},{"pubmed":"16333295","doi":"10.1038/nbt1156","pmc":null,"title":"Minimum information requested in the annotation of biochemical models (MIRIAM)","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.","examples":["pubmed"],"extras":{"miriam_id":"00000859","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk","name":"Identifiers.org namespace","pattern":"^[a-z_\\.]+$","prefix":"identifiers.namespace","status":"active","uri_format":"https://registry.identifiers.org/registry/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":{"description":"This is the identifier used internally by MIRIAM for a data type.","name":"MIRIAM","prefix":"1162"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"miriam.collection":{"prefix":"miriam.collection","name":null,"description":null,"pattern":"^000\\d{5}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000008","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"miriam","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MIR","banana_peel":null,"deprecated":true,"mappings":{"biocontext":"MIRIAM.COLLECTION","miriam":"miriam.collection","n2t":"miriam.collection"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.","examples":["MIR:00000008"],"extras":{"miriam_id":"00000008","namespaceEmbeddedInLui":false},"name":"MIRIAM Registry collection","pattern":"^MIR:000\\d{5}$","prefix":"miriam.collection","status":"deprecated"},"n2t":{"description":"MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.","examples":["MIR:00000008"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/miriam/","name":"MIRIAM Resources (data collection)","pattern":"^MIR:000\\d{5}$","prefix":"miriam.collection","uri_format":"https://www.ebi.ac.uk/miriam/main/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRIAM.COLLECTION","uri_format":"http://identifiers.org/miriam.collection/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"miriam.resource":{"prefix":"miriam.resource","name":"MIRIAM Legacy Registry Identifier","description":null,"pattern":"^001\\d{5}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00100005","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"miriam","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"MIR","banana_peel":null,"deprecated":true,"mappings":{"biocontext":"MIRIAM.RESOURCE","miriam":"miriam.resource","n2t":"miriam.resource","prefixcommons":"miriam.resource"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18078503","doi":"10.1186/1752-0509-1-58","pmc":"PMC2259379","title":"MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.","examples":["MIR:00100005"],"extras":{"miriam_id":"00000188","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/miriam/","name":"MIRIAM Registry resource","pattern":"^MIR:001\\d{5}$","prefix":"miriam.resource","status":"active","uri_format":"https://resolver.api.identifiers.org/resolveMirId/$1"},"n2t":{"description":"MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.","examples":["MIR:00100005"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/miriam/","name":"MIRIAM Registry (resources)","pattern":"^MIR:001\\d{5}$","prefix":"miriam.resource","uri_format":"https://www.ebi.ac.uk/miriam/main/resources/$1"},"prefixcommons":{"description":"MIRIAM Resources is an online resource created to catalogue the data-types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding physical URLs, whether these are controlled vocabularies or databases.","examples":["MIR:00100245"],"homepage":"http://www.ebi.ac.uk/miriam/","keywords":["registry"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"MIRIAM Resources","pattern":"^MIR:001\\d{5}$","prefix":"miriam.resource","prefix_synonyms":["mir"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/miriam.resource:$1"}],"publications":[{"pubmed":"18078503"}],"uri_format":"http://www.ebi.ac.uk/miriam/main/resources/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRIAM.RESOURCE","uri_format":"http://identifiers.org/miriam.resource/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mirnao":{"prefix":"mirnao","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Pantelis Topalis","orcid":"0000-0002-1635-4810","email":"topalis@imbb.forth.gr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"http://aber-owl.net/media/ontologies/MIRNAO/11/mirnao.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MIRNAO","biocontext":"MIRNAO","bioportal":"MIRNAO","fairsharing":"FAIRsharing.5cmtw3","obofoundry":"mirnao","ontobee":"miRNAO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mirnao.owl"}],"contact":{"email":"topalis@imbb.forth.gr","name":"Pantelis Topalis"},"description":"An application ontology for use with miRNA databases.","domain":"chemistry and biochemistry","homepage":"http://code.google.com/p/mirna-ontology/","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"microRNA Ontology","preferred_prefix":"MIRNAO","prefix":"mirnao","status":"inactive"},"bioportal":{"contact":{"email":"vdritsou@gmail.com","name":"Vicky Dritsou"},"description":"An application ontology for microRNAs.","homepage":"https://code.google.com/archive/p/mirna-ontology/","name":"MicroRNA Ontology","prefix":"MIRNAO","version":"1.7"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MIRNAO/11/mirnao.owl"}],"description":"An application ontology for microRNAs.","homepage":"https://code.google.com/p/mirna-ontology/","name":"microRNA Ontology","prefix":"MIRNAO","version":"1.7"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"microRNA Ontology","prefix":"miRNAO"},"cheminf":null,"fairsharing":{"description":"This resource is no longer available because its underlying source material is not in scope for FAIRsharing.","homepage":"https://code.google.com/p/mirna-ontology/","keywords":["Genomics"],"name":"MicroRNA Ontology","prefix":"FAIRsharing.5cmtw3","short_names":["MIRNAO"]},"biocontext":{"prefix":"MIRNAO","uri_format":"http://purl.obolibrary.org/obo/MIRNAO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mirnest":{"prefix":"mirnest","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Michael Szcześniak","orcid":"0000-0002-6050-9525","email":"miszcz@amu.edu.pl","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIRNEST","integbio":"nbdc01703","miriam":"mirnest","n2t":"mirnest","prefixcommons":"mirnest"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24243848","doi":"10.1093/nar/gkt1156","pmc":"PMC3965105","title":"miRNEST 2.0: a database of plant and animal microRNAs","year":2013},{"pubmed":"22135287","doi":"10.1093/nar/gkr1159","pmc":"PMC3245016","title":"miRNEST database: an integrative approach in microRNA search and annotation","year":2011},{"pubmed":"22135287","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24243848","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22135287","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species.","examples":["MNEST029358"],"extras":{"miriam_id":"00000246","namespaceEmbeddedInLui":false},"homepage":"http://rhesus.amu.edu.pl/mirnest/copy/","name":"miRNEST","pattern":"^MNEST\\d+$","prefix":"mirnest","status":"active","uri_format":"http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"},"n2t":{"description":"miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species.","examples":["MNEST029358"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://rhesus.amu.edu.pl/mirnest/copy/","name":"miRNEST at Adam Mickiewicz University","pattern":"^MNEST\\d+$","prefix":"mirnest","uri_format":"http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"},"prefixcommons":{"description":"miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species.","examples":["MNEST029358"],"homepage":"http://lemur.amu.edu.pl/share/php/mirnest/","keywords":["expression","prediction"],"name":"miRNEST","pattern":"^MNEST\\d+$","prefix":"mirnest","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mirnest:$1"}],"publications":[{"pubmed":"22135287"}],"uri_format":"http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRNEST","uri_format":"http://identifiers.org/mirnest/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mirtrons, miRNA gene structures) as well as from other databases and publications.","homepage":"http://mirnest.amu.edu.pl","keywords":["Genome/Gene","Genetic variation","RNA","Expression","Sequence","3D structure","Interaction/Pathway"],"name":"miRNEST","prefix":"nbdc01703","publications":[{"pubmed":"22135287"},{"pubmed":"24243848"}],"status":"inactive","xrefs":{"fairsharing":"FAIRsharing.5pfx4r"}},"pathguide":null,"tib":null},"miro":{"prefix":"miro","name":null,"description":null,"pattern":"^\\d{8}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Christos Louis","orcid":"0000-0003-2497-2210","email":"louis@imbb.forth.gr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"40000617","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/miro.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MIRO","biocontext":"MIRO","bioportal":"MIRO","fairsharing":"FAIRsharing.sjf113","obofoundry":"miro","ols":"miro","ontobee":"MIRO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19547750","doi":"10.1371/journal.pntd.0000465","pmc":"PMC2694272","title":"MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors","year":2009},{"pubmed":"19547750","doi":"10.1371/journal.pntd.0000465","pmc":null,"title":"MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/miro.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/miro.obo"}],"contact":{"email":"louis@imbb.forth.gr","name":"Christos (Kitsos) Louis"},"description":"Application ontology for entities related to insecticide resistance in mosquitos","domain":"environment","name":"Mosquito insecticide resistance","preferred_prefix":"MIRO","prefix":"miro","repository":"https://github.com/VEuPathDB-ontology/MIRO","status":"inactive","taxon":{"identifier":"44484","name":"Anopheles","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"louis@imbb.forth.gr","name":"C. Louis"},"description":"Application ontology for entities related to insecticide resistance in mosquitos.","homepage":"http://www.anobase.org","name":"Mosquito Insecticide Resistance","prefix":"MIRO","version":"releases/2014-05-14"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/miro.owl"}],"description":"Application ontology for entities related to insecticide resistance in mosquitos","extras":{"version.iri":"http://purl.obolibrary.org/obo/miro/releases/2014-05-14/miro.owl"},"name":"Mosquito insecticide resistance","prefix":"miro","version":"2014-05-14"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MIRO/1/miro.owl"}],"description":"Application ontology for entities related to insecticide resistance in mosquitos","homepage":"http://anobase.vectorbase.org","name":"Mosquito insecticide resistance","prefix":"MIRO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mosquito insecticide resistance","prefix":"MIRO"},"cheminf":null,"fairsharing":{"description":"Monitoring of insect vector populations with respect to their susceptibility to one or more insecticides is a crucial element of the strategies used for the control of arthropod-borne diseases. This management task can nowadays be achieved more efficiently when assisted by IT (Information Technology) tools, ranging from modern integrated databases to GIS (Geographic Information System). MIRO is an application ontology that can be used for the purpose of controlling mosquitoes and, thus, the diseases that they transmit.","homepage":"https://www.vectorbase.org/ontology-browser","keywords":["Life Science","mutation","phenotype"],"license":{"url":"https://www.gnu.org/licenses/gpl.html"},"name":"Mosquito Insecticide Resistance Ontology","prefix":"FAIRsharing.sjf113","publications":[{"doi":"10.1371/journal.pntd.0000465","pubmed":"19547750","title":"MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors","url":"http://doi.org/10.1371/journal.pntd.0000465","year":2009}],"short_names":["MIRO"]},"biocontext":{"prefix":"MIRO","uri_format":"http://purl.obolibrary.org/obo/MIRO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mirtarbase":{"prefix":"mirtarbase","name":"mirTarBase","description":null,"pattern":null,"uri_format":"https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mirtarbase.cuhk.edu.cn/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MIRTARBASE","integbio":"nbdc01217","miriam":"mirtarbase","n2t":"mirtarbase","pathguide":"715","wikidata":"P2646"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/940"],"publications":[{"pubmed":"34850920","doi":"10.1093/nar/gkab1079","pmc":"PMC8728135","title":"miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions","year":2022},{"pubmed":"31647101","doi":"10.1093/nar/gkz896","pmc":"PMC7145596","title":"miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database","year":2020},{"pubmed":"29126174","doi":"10.1093/nar/gkx1067","pmc":"PMC5753222","title":"miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions","year":2018},{"pubmed":"26590260","doi":"10.1093/nar/gkv1258","pmc":"PMC4702890","title":"miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database","year":2016},{"pubmed":"24304892","doi":"10.1093/nar/gkt1266","pmc":"PMC3965058","title":"miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions","year":2014},{"pubmed":"21071411","doi":"10.1093/nar/gkq1107","pmc":"PMC3013699","title":"miRTarBase: a database curates experimentally validated microRNA-target interactions","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.","examples":["MIRT000002"],"extras":{"miriam_id":"00000562","namespaceEmbeddedInLui":false},"homepage":"http://mirtarbase.mbc.nctu.edu.tw/","name":"miRTarBase","pattern":"^MIRT\\d{6}$","prefix":"mirtarbase","status":"deprecated","uri_format":"http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1"},"n2t":{"description":"miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.","examples":["MIRT000002"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mirtarbase.mbc.nctu.edu.tw/","name":"miRTarBase at National Chiao Tung University","pattern":"^MIRT\\d{6}$","prefix":"mirtarbase","uri_format":"http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=$1"},"prefixcommons":null,"wikidata":{"description":"identifier for the mirTarBase database, a database for microRNAs and their targets","examples":["MIRT000312"],"homepage":"http://mirtarbase.mbc.nctu.edu.tw/php/download.php","name":"mirTarBase ID","pattern":"^MIRT\\d{6}$","prefix":"P2646","uri_format":"https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MIRTARBASE","uri_format":"http://identifiers.org/mirtarbase/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"miRTarBase Version 3.5 is a database that contains information about miRNA-target interactions (MTIs) obtained by manual search of scientific literature with data on 4867 miRNA-target interactions, 726 miRNAs and 2789 target genes from 17 species. The database can be browsed or searched by keyword, as well as downloaded.","homepage":"http://mirtarbase.cuhk.edu.cn/php/index.php","keywords":["Genome/Gene","RNA","Sequence","Interaction/Pathway","Image/Movie"],"name":"miRTarBase","prefix":"nbdc01217","publications":[{"pubmed":"21071411"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000615"}},"pathguide":{"homepage":"http://mirtarbase.mbc.nctu.edu.tw/","name":"The Experimentally Validated microRNA-target Interactions Database","prefix":"715","short_names":["miRTarBase"]},"tib":null},"mirte":{"prefix":"mirte","name":"miRNA Target Prediction at EMBL","description":"This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.russelllab.org/miRNAs/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"miR-1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mite":{"prefix":"mite","name":"Minimum Information about a Tailoring Enzyme data repository","description":"MITE (Minimum Information about a Tailoring Enzyme) is a data repository and associated data standard designed to capture the reaction- and substrate-specificities of tailoring enzymes. Community-driven and fully expert-reviewed, it represents enzymatic reactions using reaction SMARTS and links to established resources such as UniProt, NCBI GenPept, Rhea, and MIBiG. MITE serves as a knowledgebase for enzyme and pathway annotation, in silico biosynthesis, and machine learning applications.","pattern":"^MITE\\d{7}$","uri_format":"https://mite.bioinformatics.nl/repository/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mite.bioinformatics.nl","repository":"https://github.com/mite-standard/mite_data","contact":{"name":"Mitja M. Zdouc","orcid":"0000-0001-6534-6609","email":"zdoucmm@gmail.com","github":"mmzdouc"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MITE0000001","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.26434/chemrxiv-2024-78mtl","pmc":null,"title":"The Minimum Information about a Tailoring Enzyme/Maturase data standard for capturing natural product biosynthesis","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mitja M. Zdouc","orcid":"0000-0001-6534-6609","email":"zdoucmm@gmail.com","github":"mmzdouc"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":[{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1405,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mito":{"prefix":"mito","name":"Mention Typing Ontology","description":"An ontology with predicates to formalization of the concept of mentions. The mentions may be either explicit (e.g. as when well stated into an article \"Dr. Johnson's groundbreaking research on climate change\") or implicit (e.g. such as discussing \"seminal studies in the field\"). MiTO contains the object property mito:mentions and its inverse mito:isMentionedBy.","pattern":null,"uri_format":"http://purl.org/spar/mito/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://purl.org/spar/mito","repository":"https://github.com/SPAROntologies/mito","contact":{"name":"Matteo Guenci","orcid":"0009-0006-3139-1667","email":null,"github":"matteo-guenci"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MentionType","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["mentions","natural language processing","ner","nlp","ontology","text mining"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1663,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mixs":{"prefix":"mixs","name":"Minimum Information about any (x) Sequence","description":"The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.","pattern":"^\\d{7}$","uri_format":"https://w3id.org/mixs/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/mixs/$1","providers":[{"code":"github","name":"MIxS LinkML schema","description":"MIxS LinkML schema","homepage":"https://genomicsstandardsconsortium.github.io/mixs","uri_format":"https://genomicsstandardsconsortium.github.io/mixs/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://w3id.org/mixs","repository":null,"contact":{"name":"Mark Andrew Miller","orcid":"0000-0001-9076-6066","email":"mam@lbl.gov","github":"turbomam"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001056","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/mixs/mixs.owl.ttl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MIXS","bioportal":"MIXS","ols":"gscmixs"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1738"],"publications":[{"pubmed":"21552244","doi":"10.1038/nbt.1823","pmc":"PMC3367316","title":"Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Some things to be decided before granting - [ ] should the prefix be mixs, gsc.mixs, MIxS, MIXS, ...? - [ ] MIxS terms are most commonly identified by a short computable stable label, e.g ph_regm. The GSC CIG team are creating numeric identifiers, e.g. MIXS:0001056 - Should we support both schemes? - If we do, should these be different prefixes? I would strongly recommend this. E.g. mixs.term:ph_regm, mixs:0001056. We can then have different regex patterns for both Additional notes: - It currently redirects to the tdwg wiki but this is I assume temporary","contributor":{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},"contributor_extras":[{"name":"Chris Hunter","orcid":"0000-0002-1335-0881","email":"chris@gigasciencejournal.com","github":"only1chunts"},{"name":"Lindsey N. Anderson","orcid":"0000-0002-8741-7823","email":"lindsey.anderson@pnnl.gov","github":"lnanderson"},{"name":"Mark Andrew Miller","orcid":"0000-0001-9076-6066","email":"mam@lbl.gov","github":"turbomam"}],"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"MIXS","mastodon":null,"github_request_issue":151,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"mam@lbl.gov","name":"Mark Andrew Miller"},"description":"An OWL representation of the Minimum Information for any (x) Standard (MIxS), managed by the Genomic Standards Consortium.","homepage":"https://github.com/GenomicsStandardsConsortium/mixs","name":"Minimal Information about any Sequence Ontology","prefix":"MIXS","version":"v6.2.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"rdf","url":"https://w3id.org/mixs/mixs.owl.ttl"}],"contact":{"email":"gensc-cig@googlegroups.com"},"description":"An OWL representation of the Minimum Information for any (x) Standard (MIxS), managed by the Genomic Standards Consortium. This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) for use by anyone handling data or information about biological sequences.","homepage":"https://w3id.org/mixs","name":"Minimum Information about any (x) Sequence (MIxS) standard","prefix":"gscmixs","uri_format":"MIXS:$1"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MIXS/5/mixs.owl"}],"description":"An RDF representation of the MIxS Family of Checklists","name":"Minimal Information about any Sequence Ontology","prefix":"MIXS","version":"unknown"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mlc":{"prefix":"mlc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mlc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MLCommons Association artifacts, including benchmark results, datasets, and saved models.","examples":["0.7-123"],"extras":{"miriam_id":"00000828","namespaceEmbeddedInLui":false},"homepage":"https://mlcommons.org/en/","name":"MLCommons Association","pattern":"^[0-9a-zA-Z\\.\\-\\_]+$","prefix":"mlc","status":"active","uri_format":"https://www.mlcommons.org/mlc-id/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmdb":{"prefix":"mmdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Siqian He","orcid":"0000-0002-1707-4167","email":"siqian.he@nih.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMDB","edam":"2667","miriam":"mmdb","n2t":"mmdb","pathguide":"508","prefixcommons":"mmdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17135201","doi":"10.1093/nar/gkl952","pmc":"PMC1751549","title":"MMDB: annotating protein sequences with Entrez's 3D-structure database","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.","examples":["50885"],"extras":{"miriam_id":"00000121","namespaceEmbeddedInLui":false},"homepage":"http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure","name":"Molecular Modeling Database","pattern":"^\\d{1,5}$","prefix":"mmdb","status":"active","uri_format":"http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"},"n2t":{"description":"The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.","examples":["50885"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure","name":"MMDB at NCBI","pattern":"^\\d{1,5}$","prefix":"mmdb","uri_format":"http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"},"prefixcommons":{"description":"The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, biomolecular interactions, and more.","examples":["50885"],"homepage":"http://www.ncbi.nlm.nih.gov/Structure/","keywords":["structure","protein","DNA","small molecule","interaction"],"name":"Molecular Modeling Database","pattern":"^\\d{1,5}$","prefix":"mmdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mmdb:$1"}],"publications":[{"pubmed":"17135201"}],"uri_format":"http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMDB","uri_format":"http://identifiers.org/mmdb/$1"},"edam":{"description":"An identifier of an entry from the MMDB database.","name":"MMDB","prefix":"2667"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.ncbi.nlm.nih.gov/Structure/MMDB/docs/mmdb_search.html","name":"Molecular Modeling Database","prefix":"508","short_names":["MMDB"]},"tib":null},"mmmp.biomaps":{"prefix":"mmmp.biomaps","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMMP:BIOMAPS","biolink":"mmmp.biomaps","miriam":"mmmp.biomaps","n2t":"biomaps","prefixcommons":"mmmp"},"synonyms":["mmmp:biomaps"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.","examples":["37"],"extras":{"miriam_id":"00000075","namespaceEmbeddedInLui":false},"homepage":"http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp","name":"Melanoma Molecular Map Project Biomaps","pattern":"^\\d+$","prefix":"mmmp.biomaps","status":"active","uri_format":"http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"},"n2t":{"description":"A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.","examples":["37"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp","name":"main webpage","pattern":"^\\d+$","prefix":"biomaps","uri_format":"http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"},"prefixcommons":{"description":"A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma","examples":["37"],"homepage":"http://www.mmmp.org/MMMP/","keywords":["interaction","pathway","molecule"],"name":"Melanoma Molecular Map Project","pattern":"^\\d+$","prefix":"mmmp","prefix_synonyms":["biomaps"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mmmp:$1"}],"uri_format":"http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"mmmp.biomaps","uri_format":"https://bioregistry.io/mmmp.biomaps:$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMMP:BIOMAPS","uri_format":"http://identifiers.org/mmmp:biomaps/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmo":{"prefix":"mmo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MMO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000574","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MMO","biocontext":"MMO","bioportal":"MMO","fairsharing":"FAIRsharing.bgkyd7","obofoundry":"mmo","ols":"mmo","ontobee":"MMO","tib":"mmo","wikidata.entity":"Q81661696"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24103152","doi":"10.1186/2041-1480-4-26","pmc":"PMC3882879","title":"The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications","year":2013},{"pubmed":"22654893","doi":"10.3389/fgene.2012.00087","pmc":"PMC3361058","title":"Three ontologies to define phenotype measurement data","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mmo.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mmo.obo"}],"contact":{"email":"jrsmith@mcw.edu","github":"jrsjrs","name":"Jennifer Smith","orcid":"0000-0002-6443-9376"},"description":"A representation of the variety of methods used to make clinical and phenotype measurements. ","domain":"health","homepage":"https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Measurement method ontology","preferred_prefix":"MMO","prefix":"mmo","publications":[{"pubmed":"22654893","title":"Three ontologies to define phenotype measurement data."},{"pubmed":"24103152","title":"The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications."}],"repository":"https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology","status":"active"},"bioportal":{"contact":{"email":"akwitek@mcw.edu","name":"Anne Kwitek"},"description":"The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.","homepage":"https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000","name":"Measurement Method Ontology","prefix":"MMO","publications":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3361058/"}],"version":"2.109"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mmo.owl"}],"description":"A representation of the variety of methods used to make clinical and phenotype measurements. ","extras":{"version.iri":"http://purl.obolibrary.org/obo/mmo/2.173/mmo.owl"},"homepage":"https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000","name":"Measurement method ontology","prefix":"mmo","tracker":"https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues","version":"2.173"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MMO/124/mmo.owl"}],"description":"A representation of the variety of methods used to make clinical and phenotype measurements.","homepage":"https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000","name":"Measurement method ontology","prefix":"MMO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Measurement method ontology","prefix":"MMO"},"cheminf":null,"fairsharing":{"contact":{"email":"shimoyama@mcw.edu","name":"Mary Shimoyama","orcid":"0000-0003-1176-0796"},"description":"The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.","homepage":"http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000","keywords":["Life Science","Preclinical Studies","Biomedical Science","Model organisms","phenotype"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Measurement Method Ontology","prefix":"FAIRsharing.bgkyd7","publications":[{"doi":"10.3389/fgene.2012.00087","pubmed":"22654893","title":"Three ontologies to define phenotype measurement data","url":"http://doi.org/10.3389/fgene.2012.00087","year":2012},{"doi":"10.1186/2041-1480-4-26","pubmed":"24103152","title":"The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications","url":"http://doi.org/10.1186/2041-1480-4-26","year":2013}],"repository":"https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology","short_names":["MMO"]},"biocontext":{"prefix":"MMO","uri_format":"http://purl.obolibrary.org/obo/MMO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mmo.owl"}],"description":"A representation of the variety of methods used to make clinical and phenotype measurements.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mmo/2.173/mmo.owl"},"homepage":"https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/","keywords":["DataPLANT"],"name":"Measurement Method Ontology","prefix":"mmo","tracker":"https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues"}},"mmp.cat":{"prefix":"mmp.cat","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMP.CAT","miriam":"mmp.cat","n2t":"mmp.cat"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.","examples":["MMP743597.11"],"extras":{"miriam_id":"00000615","namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/marcat/","name":"MarCat","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.cat","status":"active","uri_format":"https://mmp.sfb.uit.no/databases/marcat/#/records/$1"},"n2t":{"description":"MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.","examples":["MMP743597.11"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/marcat/","name":"MarCat through SfB","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.cat","uri_format":"https://mmp.sfb.uit.no/databases/marcat/#/records/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMP.CAT","uri_format":"http://identifiers.org/mmp.cat/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmp.db":{"prefix":"mmp.db","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMP.DB","miriam":"mmp.db","n2t":"mmp.db"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MarDB includes all sequenced marine microbial genomes regardless of level of completeness.","examples":["MMP02954345.1"],"extras":{"miriam_id":"00000614","namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/mardb/","name":"MarDB","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.db","status":"active","uri_format":"https://mmp.sfb.uit.no/databases/mardb/#/records/$1"},"n2t":{"description":"MarDB includes all sequenced marine microbial genomes regardless of level of completeness.","examples":["MMP02954345.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/mardb/","name":"MarDB through SfB","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.db","uri_format":"https://mmp.sfb.uit.no/databases/mardb/#/records/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMP.DB","uri_format":"http://identifiers.org/mmp.db/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmp.fun":{"prefix":"mmp.fun","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"mmp.fun"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MarFun is manually curated database for marine fungi which is a part of the MAR databases.","examples":["MMP3888430"],"extras":{"miriam_id":"00000729","namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/marfun","name":"MarFun","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.fun","status":"active","uri_format":"https://mmp.sfb.uit.no/databases/marfun/#/records/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmp.ref":{"prefix":"mmp.ref","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMP.REF","miriam":"mmp.ref","n2t":"mmp.ref"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.","examples":["MMP3312982.2"],"extras":{"miriam_id":"00000613","namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/marref/","name":"MarRef","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.ref","status":"active","uri_format":"https://mmp.sfb.uit.no/databases/marref/#/records/$1"},"n2t":{"description":"MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.","examples":["MMP3312982.2"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://mmp.sfb.uit.no/databases/marref/","name":"MarRef through SfB","pattern":"^MMP\\d+.\\d+$","prefix":"mmp.ref","uri_format":"https://mmp.sfb.uit.no/databases/marref/#/records/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMP.REF","uri_format":"http://identifiers.org/mmp.ref/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmrrc":{"prefix":"mmrrc","name":"Mutant Mouse Resource and Research Centers","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.mmrrc.org","repository":null,"contact":{"name":"Franziska B. Grieder","orcid":"0000-0002-3070-8224","email":"f.grieder@nih.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MMRRC","cellosaurus":"MMRRC","miriam":"mmrrc","n2t":"mmrrc","re3data":"r3d100013715","rrid":"MMRRC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"12102564","doi":null,"pmc":null,"title":"Mutant Mouse Regional Resource Center Program: a resource for distribution of mouse models for biomedical research","year":2002}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.","examples":["70"],"extras":{"miriam_id":"00000324","namespaceEmbeddedInLui":false},"homepage":"http://www.mmrrc.org/","name":"MMRRC","pattern":"^\\d+$","prefix":"mmrrc","status":"active","uri_format":"http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"},"n2t":{"description":"The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.","examples":["70"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.mmrrc.org/","name":"MMRRC at University of North Carolina","pattern":"^\\d+$","prefix":"mmrrc","uri_format":"http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.mmrrc.org/","name":"Mutant Mouse Resource & Research Centers","prefix":"MMRRC","uri_format":"https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MMRRC","uri_format":"https://www.mmrrc.org/catalog/sds.php?mmrrc_id=$1"},"edam":null,"re3data":{"description":"The MMRRC is the nation’s premier national public repository system for mutant mice. Funded by the NIH continuously since 1999, the MMRRC archives and distributes scientifically valuable spontaneous and induced mutant mouse strains and ES cell lines for use by the biomedical research community. The MMRRC consists of a national network of breeding and distribution repositories and an Informatics Coordination and Service Center located at 4 major academic centers across the nation. The MMRRC is committed to upholding the highest standards of experimental design and quality control to optimize the reproducibility of research studies using mutant mice.","homepage":"https://www.mmrrc.org","name":"Mutant Mouse Resource & Research Centers","prefix":"r3d100013715","prefix_synonyms":["MMRRC"],"xrefs":{"doi":"10.17616/R31NJN2R","nif":"0000-00045"}},"hl7":null,"bartoc":null,"rrid":{"homepage":"http://www.mmrrc.org/","keywords":["FASEB list","cryopreserved","database","embryonic stem cell","embryonic stem cell line","mouse strain","mutant","mutant mouse strain","stem cell","transgenic"],"name":"Mutant Mouse Regional Resource Center","prefix":"MMRRC","xrefs":{"scr":"002953"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmsinc":{"prefix":"mmsinc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"mmsinc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats.","examples":["MMs00000001"],"homepage":"http://mms.dsfarm.unipd.it/MMsINC","keywords":["small molecule","structure"],"name":"MMsINC","pattern":"^MMs\\d+$","prefix":"mmsinc","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mmsinc:$1"}],"uri_format":"http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmsl":{"prefix":"mmsl","name":"Multum MediSource Lexicon","description":"The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3355","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"hl7":"2.16.840.1.113883.6.175"},"synonyms":["MMSL_CODE"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"Medisource Lexicon. Multum Information Services, Inc., Denver, CO. Release Date: March 1, 2004. URL: http://www.multum.com/ Phone: 888-633-4772 x1420.http://www.multum.com/Lexicon.htm","extras":{"organization":"Multum Information Services, Inc."},"homepage":"http://www.multum.com/","name":"Multum","preferred_prefix":"mmsl","prefix":"2.16.840.1.113883.6.175","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mmusdv":{"prefix":"mmusdv","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MmusDv_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000066","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MMUSDV","biocontext":"MMUSDV","biolink":"MmusDv","bioportal":"MMUSDV","fairsharing":"FAIRsharing.zchb68","obofoundry":"mmusdv","ols":"mmusdv","ontobee":"MmusDv","wikidata.entity":"Q81661698"},"synonyms":["MmusDv"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mmusdv.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mmusdv.obo"}],"contact":{"email":"frederic.bastian@unil.ch","github":"fbastian","name":"Frédéric Bastian","orcid":"0000-0002-9415-5104"},"description":"Life cycle stages for Mus Musculus","domain":"anatomy and development","homepage":"https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Mouse Developmental Stages","preferred_prefix":"MmusDv","prefix":"mmusdv","repository":"https://github.com/obophenotype/developmental-stage-ontologies","status":"active"},"bioportal":{"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall"},"description":"Life cycle stages for Mus Musculus. MmusDv was developed by the Bgee group with assistance from the core Uberon developers and the Mouse anatomy ontology developers. Currently it includes both embryonic stages and adult stages.","homepage":"https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv","name":"Mouse Developmental Stages","prefix":"MMUSDV"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mmusdv.owl"}],"description":"Life cycle stages for Mus Musculus","extras":{"version.iri":"http://purl.obolibrary.org/obo/life-stages/releases/2025-01-23/components/mmusdv.owl"},"homepage":"https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv","name":"Mouse Developmental Stages","prefix":"mmusdv","tracker":"https://github.com/obophenotype/developmental-stage-ontologies/issues","version":"2025-01-23"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MMUSDV/12/mmusdv.owl"}],"description":"Life cycle stages for Mus Musculus","homepage":"https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv","name":"Mouse Developmental Stages","prefix":"MMUSDV"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"MmusDv","uri_format":"http://purl.obolibrary.org/obo/MMUSDV_$1"},"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mouse Developmental Stages","prefix":"MmusDv"},"cheminf":null,"fairsharing":{"description":"Life cycle stages for Mus Musculus. MmusDv was developed by the Bgee group with assistance from the core Uberon developers and the Mouse anatomy ontology developers. Currently it includes both embryonic stages and adult stages. ","homepage":"https://obofoundry.org/ontology/mmusdv.html","keywords":["Embryology","Anatomy","Developmental Biology","life cycle stage"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Mouse Developmental Stages","prefix":"FAIRsharing.zchb68","repository":"https://github.com/obophenotype/developmental-stage-ontologies","short_names":["MMUSDV"]},"biocontext":{"prefix":"MMUSDV","uri_format":"http://purl.obolibrary.org/obo/MMUSDV_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mo":{"prefix":"mo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MO","biocontext":"MO","bioportal":"MO","fairsharing":"FAIRsharing.qs4x5m","miriam":"mo","n2t":"mo","obofoundry":"mo","wikidata.entity":"Q114677897"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.","examples":["ArrayGroup"],"extras":{"miriam_id":"00000303","namespaceEmbeddedInLui":false},"homepage":"https://mged.sourceforge.net/ontologies/MGEDontology.php","name":"MGED Ontology","pattern":"^\\w+$","prefix":"mo","status":"active","uri_format":"https://mged.sourceforge.net/ontologies/MGEDontology.php#$1"},"n2t":{"description":"The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.","examples":["ArrayGroup"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://bioportal.bioontology.org/","name":"MGED Ontology at BioPortal","pattern":"^\\w+$","prefix":"mo","uri_format":"http://purl.bioontology.org/ontology/MO/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mo.owl"}],"contact":{"email":"stoeckrt@pcbi.upenn.edu","name":"Chris Stoeckert","orcid":"0000-0002-5714-991X"},"description":"A standardized description of a microarray experiment in support of MAGE v.1.","domain":"investigations","homepage":"http://mged.sourceforge.net/ontologies/MGEDontology.php","name":"Microarray experimental conditions","preferred_prefix":"MO","prefix":"mo","status":"inactive"},"bioportal":{"contact":{"email":"stoeckrt@pcbi.upenn.edu","name":"Chris Stoeckert"},"description":"Concepts, definitions, terms, and resources for standardized description of a microarray experiment in support of MAGE v.1.","homepage":"http://mged.sourceforge.net/ontologies/MGEDontology.php","name":"Microarray and Gene Expression Data Ontology","prefix":"MO","version":"1.3.1.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MO/1/mo.owl"}],"description":"Concepts, definitions, terms, and resources for standardized description of a microarray experiment in support of MAGE v.1.","homepage":"http://mged.sourceforge.net/ontologies/MGEDontology.php","name":"Microarray and Gene Expression Data Ontology","prefix":"MO","version":"1.3.1.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"stoeckrt@pcbi.upenn.edu","name":"Chris Stoeckert","orcid":"0000-0002-5714-991X"},"description":"The MGED Ontology is a top level container for the MGEDCoreOntology and the MGEDExtendedOntology. The MGED ontology describes microarray experiments and is split into the MGEDCoreOntology, which supports MAGE-OM v1.0 and is organized consistently with MAGE, and the MGEDExtendedOntology, which expands MAGE v1.0 and contains concepts and relationships which are not included in MAGE. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/MO. If you work on the project responsible for \"MGED Ontology\" then please consider helping us by claiming this record and updating it appropriately.","homepage":"http://mged.sourceforge.net/ontologies/MGEDontology.php","keywords":["Life Science","Expression data","assay","DNA microarray","transcript"],"name":"Microarray and Gene Expression Data Ontology","prefix":"FAIRsharing.qs4x5m","publications":[{"doi":"10.1093/bioinformatics/btl005","pubmed":"16428806","title":"The MGED Ontology: a resource for semantics-based description of microarray experiments","url":"http://doi.org/10.1093/bioinformatics/btl005","year":2006}],"short_names":["MO"]},"biocontext":{"prefix":"MO","uri_format":"http://purl.obolibrary.org/obo/MO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mobidb":{"prefix":"mobidb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mobidb.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"uniprot","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MOBIDB","integbio":"nbdc01956","miriam":"mobidb","n2t":"mobidb","pathguide":"623","uniprot":"DB-0183"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39470701","doi":"10.1093/nar/gkae969","pmc":null,"title":"MOBIDB in 2025: integrating ensemble properties and function annotations for intrinsically disordered proteins","year":2024},{"pubmed":"33237329","doi":"10.1093/nar/gkaa1058","pmc":"PMC7779018","title":"MobiDB: intrinsically disordered proteins in 2021","year":2021},{"pubmed":"29136219","doi":"10.1093/nar/gkx1071","pmc":"PMC5753340","title":"MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins","year":2018},{"pubmed":"25361972","doi":"10.1093/nar/gku982","pmc":"PMC4384034","title":"MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins","year":2014},{"pubmed":"22661649","doi":"10.1093/bioinformatics/bts327","pmc":null,"title":"MobiDB: a comprehensive database of intrinsic protein disorder annotations","year":2012},{"pubmed":"22661649","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25361972","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36416266","doi":"10.1093/nar/gkac1065","pmc":null,"title":null,"year":null},{"pubmed":"22661649","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25361972","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36416266","doi":"10.1093/nar/gkac1065","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MobiDB is a database of protein disorder and mobility annotations.","examples":["P10636"],"extras":{"miriam_id":"00000637","namespaceEmbeddedInLui":false},"homepage":"https://mobidb.org/","name":"MobiDB","pattern":"^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$","prefix":"mobidb","status":"active","uri_format":"https://mobidb.org/$1"},"n2t":{"description":"MobiDB is a database of protein disorder and mobility annotations.","examples":["P10636"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mobidb.bio.unipd.it","name":"MobiDB","pattern":"^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$","prefix":"mobidb","uri_format":"http://mobidb.bio.unipd.it/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://mobidb.org","keywords":["Family and domain databases"],"name":"MobiDB","prefix":"DB-0183","publications":[{"doi":"10.1093/nar/gkac1065","pubmed":"36416266"}],"short_names":["MobiDB"],"uri_format":"https://mobidb.org/$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MOBIDB","uri_format":"http://identifiers.org/mobidb/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various sources and prediction tools. Different levels of reliability and different features are reported as different and independent annotations. The database features three levels of annotation: manually curated, indirect and predicted. MobiDB annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined.","homepage":"https://mobidb.org/","keywords":["Protein","Sequence","3D structure"],"name":"MobiDB","prefix":"nbdc01956","publications":[{"pubmed":"22661649"},{"pubmed":"25361972"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.jwra3e"}},"pathguide":{"homepage":"http://mobidb.bio.unipd.it/","name":"a database of protein disorder and mobility annotations","prefix":"623","short_names":["MobiDB"]},"tib":null},"mobio":{"prefix":"mobio","name":"Mobilome Ontology","description":"The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology.","pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/MOBIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/arpcard/mobio","repository":"https://github.com/arpcard/mobio","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/arpcard/mobio/raw/refs/heads/master/mobio.owl","download_obo":"https://github.com/arpcard/mobio/raw/refs/heads/master/mobio.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mobivoc":{"prefix":"mobivoc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AccessCondition","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mv"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/vocol/mobivoc/develop/diagrams/mobivoc_v1.1.4.ttl"}],"description":"MobiVoc is an open vocabulary for future-oriented mobility solutions.","homepage":"https://www.mobivoc.org/","keywords":["NFDI4ING","FID move","traffic engineering"],"name":"MobiVoc Open Mobility Vocabulary 1.1.4","prefix":"mv","tracker":"https://github.com/vocol/mobivoc/issues","uri_format":"http://schema.mobivoc.org/#$1"}},"mod":{"prefix":"mod","name":null,"description":null,"pattern":"^\\d{5}$","uri_format":"http://purl.obolibrary.org/obo/MOD_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01467","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"PSIMOD","biocontext":"MOD","bioportal":"PSIMOD","fairsharing":"FAIRsharing.2m4ms9","go":"PSI-MOD","miriam":"mod","n2t":"mod","obofoundry":"mod","ols":"mod","ontobee":"MOD","prefixcommons":"psi.mod","tib":"mod","wikidata.entity":"Q81661700"},"synonyms":["PSI-MOD"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18688235","doi":"10.1038/nbt0808-864","pmc":null,"title":"The PSI-MOD community standard for representation of protein modification data","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.","examples":["00001"],"extras":{"miriam_id":"00000056","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/mod","name":"Protein Modification Ontology","pattern":"^MOD:\\d{5}$","prefix":"mod","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/mod/terms?obo_id=MOD:$1"},"n2t":{"description":"The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.","examples":["00001"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://bioportal.bioontology.org/ontologies/PSIMOD","name":"Protein modifications ontology through BioPortal","pattern":"^MOD:\\d{5}","prefix":"mod","uri_format":"http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:$1"},"prefixcommons":{"description":"The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.","examples":["MOD:00001"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/PSI-MOD#$1"]},"homepage":"http://psidev.sourceforge.net/mod/","keywords":["ontology","protein","molecule","structure"],"name":"Protein Modification ontology","pattern":"^MOD:\\d{5}$","prefix":"psi.mod","prefix_synonyms":["mod","obo.psi-mod"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/psi.mod:$1"}],"xrefs":{"bioportal":"1041"}},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.psidev.info/groups/protein-modifications","name":"Proteomics Standards Initiative protein modification ontology","prefix":"PSI-MOD","prefix_synonyms":["MOD"]},"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mod.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mod.obo"}],"contact":{"email":"pierre-alain.binz@chuv.ch","github":"pabinz","name":"Pierre-Alain Binz","orcid":"0000-0002-0045-7698"},"description":"PSI-MOD is an ontology consisting of terms that describe protein chemical modifications","domain":"chemistry and biochemistry","homepage":"http://www.psidev.info/MOD","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Protein modification","preferred_prefix":"MOD","prefix":"mod","publications":[{"pubmed":"18688235","title":"The PSI-MOD community standard for representation of protein modification data"}],"repository":"https://github.com/HUPO-PSI/psi-mod-CV","status":"active"},"bioportal":{"contact":{"email":"sylvie.ricard-blum@univ-lyon1.fr","name":"Sylvie Ricard-Blum"},"description":"PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.","homepage":"http://www.psidev.info/MOD","name":"Protein Modification Ontology","prefix":"PSIMOD","version":"1.031.6"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mod.owl"}],"description":"PSI-MOD is an ontology consisting of terms that describe protein chemical modifications","extras":{"version.iri":"http://purl.obolibrary.org/obo/mod/1.032.4/mod.owl"},"homepage":"http://www.psidev.info/MOD","name":"Protein modification","prefix":"mod","tracker":"https://github.com/HUPO-PSI/psi-mod-CV/issues","version":"1.032.4"},"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/PSIMOD/4/psimod.obo"}],"description":"PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.","homepage":"http://www.psidev.info/MOD","name":"Protein Modification Ontology","prefix":"PSIMOD","version":"1.013.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Protein modification","prefix":"MOD"},"cheminf":null,"fairsharing":{"description":"The HUPO Proteomic Standards Initiative (PSI) protein modifications ontology (MOD) consists of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.","homepage":"https://github.com/hupo-psi/psi-mod-cv","keywords":["Life Science","Chemical Biology","Proteomics","post-translational protein modification","enzymatic reaction","protein"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"PSI Protein Modifications Ontology","prefix":"FAIRsharing.2m4ms9","publications":[{"doi":"10.1038/nbt0808-864","pubmed":"18688235","title":"The PSI-MOD community standard for representation of protein modification data","url":"http://doi.org/10.1038/nbt0808-864","year":2008}],"short_names":["PSI-MOD"]},"biocontext":{"prefix":"MOD","uri_format":"http://purl.obolibrary.org/obo/MOD_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mod.owl"}],"description":"PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mod/1.032.4/mod.owl"},"homepage":"http://www.psidev.info/MOD","keywords":["NFDI4CHEM","DataPLANT","chemistry","life sciences, biology"],"name":"Protein Modification","prefix":"mod","tracker":"https://github.com/HUPO-PSI/psi-mod-CV/issues"}},"modalia":{"prefix":"modalia","name":"MoDALIA Ontology","description":"The aim of DALIA project is to build a platform for learning material for Research Data Management (RDM) and Data Science. The platform is based on a knowledge graph. We introduce MoDalia, the base ontology of DALIA knowledge graph. Modalia inherits some modules from EduCOR. It includes also modelling of micro -credentials and certificates","pattern":null,"uri_format":"https://purl.org/ontology/modalia#$1","uri_format_resolvable":null,"rdf_uri_format":"https://purl.org/ontology/modalia#$1","providers":null,"homepage":"https://dalia.pages.rwth-aachen.de/dalia-ontology/","repository":"https://git.rwth-aachen.de/dalia/dalia-ontology","contact":{"name":"Abdelmoneim Amer Desouki","orcid":"0000-0003-2083-1277","email":"abdelmoneim.desouki@tu-darmstadt.de","github":"abdoudesouki"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"belongsToCluster","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://git.rwth-aachen.de/dalia/dalia-ontology/-/raw/main/modalia.obo","download_json":null,"download_rdf":"https://git.rwth-aachen.de/dalia/dalia-ontology/-/raw/main/MoDalia.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20825","tib":"modalia"},"synonyms":null,"keywords":null,"domain":"data model","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"MoDalia is the basic ontology of the DALIA knowledge graph. The aim of the DALIA project is to establish a platform for learning materials on the topics of research data management (RDM) and data science. MoDalia incorporates several modules from EduCOR. It also includes the modeling of micro-credentials and certificates.","homepage":"https://dalia.pages.rwth-aachen.de/dalia-ontology/","license":{"spdx":"CC-BY-4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"MoDALIA Ontology","prefix":"20825","short_names":["Modalia"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://git.rwth-aachen.de/dalia/dalia-ontology/-/raw/main/MoDalia.ttl"}],"description":"An ontology encoding the data model of the DALIA knowledge graph, reusing/extending Schema.org, FaBIO, EduCOR, HRCT, and other ontologies/CVs","extras":{"version.iri":"https://purl.org/ontology/modalia#1.0.0"},"homepage":"https://dalia.pages.rwth-aachen.de/dalia-ontology/","keywords":["Educational Resources","educational science"],"name":"MoDalia Ontology","prefix":"modalia","uri_format":"https://purl.org/ontology/modalia#$1"}},"modeldb":{"prefix":"modeldb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Perry Miller","orcid":"0000-0002-5176-943X","email":"perry.miller@yale.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"modeldb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MODELDB","edam":"2669","integbio":"nbdc02085","miriam":"modeldb","n2t":"modeldb","prefixcommons":"modeldb","re3data":"r3d100011330"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27629590","doi":"10.1007/s10827-016-0623-7","pmc":"PMC5279891","title":"Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience","year":2016},{"pubmed":"15218350","doi":"10.1023/b:jcns.0000023869.22017.2e","pmc":"PMC3732827","title":"ModelDB: A Database to Support Computational Neuroscience","year":2004},{"pubmed":"15055399","doi":"10.1385/ni:1:1:135","pmc":"PMC3728921","title":"ModelDB: making models publicly accessible to support computational neuroscience","year":2003},{"pubmed":"8930855","doi":"10.1136/jamia.1996.97084512","pmc":"PMC116323","title":"ModelDB: an environment for running and storing computational models and their results applied to neuroscience","year":1996}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.","examples":["45539"],"extras":{"miriam_id":"00000131","namespaceEmbeddedInLui":false},"homepage":"https://modeldb.science","name":"ModelDB","pattern":"^\\d+$","prefix":"modeldb","status":"active","uri_format":"https://modeldb.science/$1"},"n2t":{"description":"ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.","examples":["45539"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://senselab.med.yale.edu/ModelDB/","name":"ModelDB at SenseLab","pattern":"^\\d+$","prefix":"modeldb","uri_format":"http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1"},"prefixcommons":{"description":"ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.","examples":["45539"],"homepage":"http://senselab.med.yale.edu/ModelDB/","license":{"name":"http://senselab.med.yale.edu/ModelDB/HowToCite.html","url":"http://senselab.med.yale.edu/ModelDB/HowToCite.html"},"name":"ModelDB","pattern":"^\\d+$","prefix":"modeldb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/modeldb:$1"}],"publications":[{"pubmed":"15055399"}],"uri_format":"http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MODELDB","uri_format":"http://identifiers.org/modeldb/$1"},"edam":{"description":"Unique identifier of an entry from the ModelDB database.","name":"ModelDB","prefix":"2669"},"re3data":{"description":"ModelDB is a curated database of published models in the broad domain of computational neuroscience. It addresses the need for access to such models in order to evaluate their validity and extend their use. It can handle computational models expressed in any textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment. The model source code doesn't even have to reside inside ModelDB; it just has to be available from some publicly accessible online repository or WWW site.","homepage":"https://modeldb.science/","name":"ModelDB","prefix":"r3d100011330","xrefs":{"doi":"10.17616/R3P61F","nif":"0000-00004"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. A ModelDB entry contains a model's source code, concise description, and a citation of the article that published it. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.","homepage":"http://senselab.med.yale.edu/modeldb","keywords":["Cell/Organelle","Method","Bibliography/Documents"],"name":"ModelDB","prefix":"nbdc02085","publications":[{"pubmed":"15218350"},{"pubmed":"8930855"},{"pubmed":"15055399"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.5rb3fk"}},"pathguide":null,"tib":null},"modeldb.concept":{"prefix":"modeldb.concept","name":"ModelDB concept","description":"Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models.","pattern":"^\\d+$","uri_format":"https://modeldb.science/modellist/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://senselab.med.yale.edu/ModelDB","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3639","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"modeldb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"modsci":{"prefix":"modsci","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AcidbaseChemistry","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"ModSci","bioportal":"MODSCI","lov":"modsci","tib":"modsci"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"sm_fathalla@yahoo.com","name":"SaidFathalla"},"description":"ModSci is a reference ontology for modelling different types of modern sciences and related entities, such as scientific discoveries, renowned scientists, instruments, phenomena ... etc.","homepage":"https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html","name":"Modern Science Ontology","prefix":"MODSCI","version":"1.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/ModSci/2/modsci.owl"}],"description":"Modern Science Ontology (ModSci), for modeling relationships between modern science branches and related entities, such as scientific discoveries, phenomena, renowned scientists, instruments, etc. ModSci is an upper ontology that provides a unifying framework for the various domain ontologies that make up the Science Knowledge Graph Ontology Suite. The Systematic Approach for Building Ontologies (SABiO) has been followed in the development of ModSci. ModSci is a poly-hierarchical ontology that can be utilized in semantic web applications. ModSci powers two projects for semantically representing scholarly information: Open Research Knowledge Graph (for the categorization of research papers) and OpenResearch.org (for the categorization of the information about scientific events, research projects, scientific papers, publishers, and journals).","homepage":"https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html","name":"Modern Science Ontology","prefix":"ModSci","version":"1.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"ModSci is a reference ontology for modelling different types of modern sciences and related entities, such as scientific discoveries, renowned scientists, instruments, phenomena ... etc.","homepage":"https://w3id.org/skgo/modsci#","keywords":["Academy","Society"],"name":"ModSci, Modern Science Ontology.","prefix":"modsci","uri_format":"https://w3id.org/skgo/modsci#$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/ontology.ttl"}],"description":"ModSci is a reference ontology for modelling different types of modern sciences and related entities, such as scientific discoveries, renowned scientists, instruments, phenomena ... etc.","extras":{"version.iri":"https://w3id.org/skgo/modsci/1.1"},"homepage":"https://saidfathalla.github.io/Science-knowledge-graph-ontologies/doc/ModSci_doc/index-en.html","keywords":["NFDI4ING"],"name":"Modern Science Ontology","prefix":"modsci","uri_format":"https://w3id.org/skgo/modsci#$1"}},"moid":{"prefix":"moid","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"moid"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"M3G stands for “Metadata Management and distribution system for Multiple GNSS Networks”. M3G allows to upload, validate, and distribute GNSS station metadata such as IGS-style site logs, information about local networks, DOIs, nominal data provision, data licenses attached to the daily RINEX data, etc...","examples":["station.6051b2f8b9142a5b8c676342"],"extras":{"miriam_id":"00001068","namespaceEmbeddedInLui":false},"homepage":"https://www.astro.oma.be/en/","name":"Metadata Management and distribution system for Multiple GNSS Networks","pattern":"^[a-zA-Z0-9]+\\.[a-f0-9]{24}$","prefix":"moid","status":"active","uri_format":"https://gnss-metadata.eu/MOID/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molbase":{"prefix":"molbase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MOLBASE","miriam":"molbase","n2t":"molbase"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.","examples":["128796-39-4"],"extras":{"miriam_id":"00000458","namespaceEmbeddedInLui":false},"homepage":"http://www.molbase.com/","name":"Molbase","pattern":"^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$","prefix":"molbase","status":"active","uri_format":"http://www.molbase.com/en/index.php?app=search&search_keyword=$1"},"n2t":{"description":"Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.","examples":["128796-39-4"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.molbase.com/","name":"Molbase at Chinese Academy of Sciences","pattern":"^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$","prefix":"molbase","uri_format":"http://www.molbase.com/en/index.php?app=search&search_keyword=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MOLBASE","uri_format":"http://identifiers.org/molbase/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molbase.sheffield":{"prefix":"molbase.sheffield","name":"MolBase","description":"An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://winter.group.shef.ac.uk/molbase/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1868","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Do not confuse with molbase, which is a provider. These resources are unrelated.","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molbic.cellline":{"prefix":"molbic.cellline","name":"MolBiC Cell Line","description":"MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for cell lines used in assays measuring molecular bioactivity, linking them to associated compounds and proteins.","pattern":"^CL\\d+$","uri_format":"https://molbic.idrblab.net/data/cellline/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://molbic.idrblab.net","repository":null,"contact":{"name":"Feng Zhu","orcid":"0000-0001-8069-0053","email":"zhufeng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CL000025","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39373530","doi":"10.1093/nar/gkae868","pmc":null,"title":"MolBiC: the cell-based landscape illustrating molecular bioactivities","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1418,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molbic.compound":{"prefix":"molbic.compound","name":"MolBiC Compound","description":"MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for chemical compounds with experimentally validated bioactivity in cellular contexts.","pattern":"^CP\\d+$","uri_format":"https://molbic.idrblab.net/data/compound/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://molbic.idrblab.net","repository":null,"contact":{"name":"Feng Zhu","orcid":"0000-0001-8069-0053","email":"zhufeng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CP0041613","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39373530","doi":"10.1093/nar/gkae868","pmc":"PMC11701603","title":"MolBiC: the cell-based landscape illustrating molecular bioactivities","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1418,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molbic.protein":{"prefix":"molbic.protein","name":"MolBiC Protein","description":"MolBiC provides information about cell-based molecular bioactivities along with associated compounds, proteins and cell lines. This prefix maintains identifiers for proteins that serve as molecular targets in cell-based bioactivity measurements.","pattern":"^PT\\d+$","uri_format":"https://molbic.idrblab.net/data/protein/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://molbic.idrblab.net","repository":null,"contact":{"name":"Feng Zhu","orcid":"0000-0001-8069-0053","email":"zhufeng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"PT00819","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39373530","doi":"10.1093/nar/gkae868","pmc":null,"title":"MolBiC: the cell-based landscape illustrating molecular bioactivities","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1418,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molgluedb":{"prefix":"molgluedb","name":"MolGlueDB","description":"Identifiers correspond to molecular glue compounds in the MolGlueDB which is a free and open-access online database dedicated to the collection and integration of molecular glue compound information.","pattern":"^\\d+$","uri_format":"https://www.molgluedb.com/browseDB/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.molgluedb.com","repository":null,"contact":{"name":"Chong Qin","orcid":"0000-0001-8108-1698","email":"qc@ouc.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["compound","degraders","proteolysis"],"domain":null,"references":null,"publications":[{"pubmed":"40842115","doi":"10.1093/nar/gkaf811","pmc":null,"title":"MolGlueDB: an online database of molecular glues","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Kangho Ji","orcid":"0009-0009-3402-8013","email":"ji.kang@northeastern.edu","github":"kanghosaeyo"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1775,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molmedb":{"prefix":"molmedb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Karel Berka","orcid":"0000-0001-9472-2589","email":"karel.berka@upol.cz","github":"KarelBerka"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"molmedb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Dominik Martinat","orcid":"0000-0001-6611-7883","email":"dominik.martinat@gmail.com","github":"DominikMartinat"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ","examples":["MM00040"],"extras":{"miriam_id":"00000768","namespaceEmbeddedInLui":false},"homepage":"http://www.upol.cz/en/","name":"MolMeDB","pattern":"^[Mm]{2}[0-9]{5,}(\\.[0-9]+)?$","prefix":"molmedb","status":"active","uri_format":"https://molmedb.upol.cz/mol/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"molmovdb":{"prefix":"molmovdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc00573","prefixcommons":"molmovdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits.","examples":["f665230-5267"],"homepage":"http://bioinfo.mbb.yale.edu/MolMovDB/","keywords":["protein","small molecule","classification","structure"],"name":"Database of Macromolecular Movements","pattern":"^[A-Z,0-9]+$","prefix":"molmovdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/molmovdb:$1"}],"uri_format":"http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MolMovDB is a database of the motions that occur in proteins and other macromolecules, particularly using movies. This database classifies macromolecular motions into a limited number of categories, first on the basis of size (distinguishing between fragment, domain and subunit motions) and then on the basis of packing. Moreover, it contains tools to interpolate between two conformations (the Morph Server) and predict possible motions in a single structure and an interface to a hinge prediction service, which acts on single structures and predicts likely residue points for flexibility.","homepage":"http://molmovdb.org/","keywords":["DNA","RNA","Protein","Image/Movie","3D structure"],"name":"The database of molecular motions","prefix":"nbdc00573","publications":[{"pubmed":"9722650"}],"short_names":["MolMovDB"],"status":"inactive"},"pathguide":null,"tib":null},"mona":{"prefix":"mona","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://massbank.us","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"re3data":"r3d100012318","wikidata":"P13537"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for spectra in the MassBank of North America database","examples":["FiehnLib001006","HMDB0029665_c_ms_100393","VF-NPL-QTOF009997"],"name":"MoNA spectrum ID","prefix":"P13537","uri_format":"https://massbank.us/spectra/display/$1","xrefs":{"wikidata":"Q133847597"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records. It intends to serve as a the framework for a centralized, collaborative database of metabolite mass spectra, metadata and associated compounds. MoNA currently contains over 200,000 mass spectral records from experimental and in-silico libraries as well as from user contributions.","homepage":"https://mona.fiehnlab.ucdavis.edu/","license":{"name":"other"},"name":"MoNA","prefix":"r3d100012318","prefix_synonyms":["MassBank of North America"],"xrefs":{"doi":"10.17616/R3ND3Z","omics":"13585"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mondo":{"prefix":"mondo","name":"Mondo Disease Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MONDO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"clinicalgenome","name":"Clinical Genome","description":"Clinical genome condition","homepage":"https://search.clinicalgenome.org","uri_format":"https://search.clinicalgenome.org/kb/conditions/MONDO:$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/mondo.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MONDO","bartoc":"20699","biocontext":"MONDO","bioportal":"MONDO","fairsharing":"FAIRsharing.b2979t","integbio":"nbdc02563","miriam":"mondo","obofoundry":"mondo","ols":"mondo","ontobee":"MONDO","togoid":"Mondo","wikidata":"P5270","wikidata.entity":"Q27468140"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":2022},{"pubmed":"27899636","doi":"10.1093/nar/gkw1128","pmc":null,"title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","year":2016},{"pubmed":"31701156","doi":"10.1093/nar/gkz997","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1093/genetics/iyaf215","pmc":null,"title":"Mondo: Integrating Disease Terminology Across Communities","year":null},{"pubmed":null,"doi":"10.1101/2022.04.13.22273750","pmc":null,"title":"Mondo: Unifying diseases for the world, by the world","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":"monarch_initiative@genomic.social","github_request_issue":null,"logo":null,"miriam":{"description":"The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world.","examples":["0004994"],"extras":{"miriam_id":"00001089","namespaceEmbeddedInLui":false},"homepage":"https://monarchinitiative.org","name":"Mondo Disease Ontology","pattern":"^\\d{7}$","prefix":"mondo","status":"active","uri_format":"http://purl.obolibrary.org/obo/MONDO_$1"},"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an entity in the Mondo Disease Ontology","examples":["MONDO_0005301","MONDO_0005344"],"homepage":"https://github.com/monarch-initiative/mondo","name":"Mondo ID","pattern":"^MONDO_([0-9]{1,7})$","prefix":"P5270","short_names":["MONDO"]},"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mondo.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mondo.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/mondo.json"}],"contact":{"email":"Sabrina@tislab.org","github":"sabrinatoro","name":"Sabrina Toro","orcid":"0000-0002-4142-7153"},"description":"A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.","domain":"health","homepage":"https://monarch-initiative.github.io/mondo","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"logo":"https://raw.githubusercontent.com/monarch-initiative/mondo/master/docs/images/mondo_logo_black-stacked-small.png","name":"Mondo Disease Ontology","preferred_prefix":"MONDO","prefix":"mondo","publications":[{"doi":"10.1093/genetics/iyaf215","title":"Mondo: Integrating Disease Terminology Across Communities"},{"doi":"10.1101/2022.04.13.22273750","medrxiv":"2022.04.13.22273750","title":"Mondo: Unifying diseases for the world, by the world"}],"repository":"https://github.com/monarch-initiative/mondo","status":"active","taxon":{"identifier":"33208","name":"Metazoa","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"nicole.a.vasilevsky@gmail.com","name":"Nicole Vasilevsky"},"description":"The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world. It is a semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology., A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.","homepage":"http://obofoundry.org/ontology/mondo.html","license":{"name":"CC-BY-4.0"},"name":"Mondo Disease Ontology","prefix":"MONDO","publications":[{"url":"https://mondo.monarchinitiative.org/pages/resources/"}],"version":"2026-03-03"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://purl.obolibrary.org/obo/mondo/mondo-international.owl"}],"description":"A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mondo/releases/2026-03-03/mondo-international.owl"},"homepage":"https://monarch-initiative.github.io/mondo","name":"Mondo Disease Ontology","prefix":"mondo","tracker":"https://github.com/monarch-initiative/mondo/issues","version":"2026-03-03"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MONDO/111/mondo.owl"}],"description":"A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.","homepage":"https://monarch-initiative.github.io/mondo","name":"Mondo Disease Ontology","prefix":"MONDO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mondo Disease Ontology","prefix":"MONDO"},"cheminf":null,"fairsharing":{"description":"MonDO (Monarch Disease Ontology) is a semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.","homepage":"https://mondo.monarchinitiative.org/","keywords":["Medicine","Infectious Disease Medicine","Biocuration"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBdGtDIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--898bdc43b92d38a40469367c9d28eae876b63f8b/mondo_logo_black-stacked.png?disposition=inline","name":"Monarch Disease Ontology","prefix":"FAIRsharing.b2979t","publications":[{"doi":"10.1101/2022.04.13.22273750","title":"Mondo: Unifying diseases for the world, by the world","url":"http://dx.doi.org/10.1101/2022.04.13.22273750","year":2022},{"doi":"10.1093/nar/gkw1128","pubmed":"27899636","title":"The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species","url":"http://dx.doi.org/10.1093/nar/gkw1128","year":2016}],"repository":"https://github.com/monarch-initiative/mondo","short_names":["MONDO"]},"biocontext":{"prefix":"MONDO","uri_format":"http://purl.obolibrary.org/obo/MONDO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world. It is a semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.","homepage":"https://mondo.monarchinitiative.org/","license":{"spdx":"CC-BY-4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Mondo Disease Ontology","prefix":"20699","short_names":["MONDO"]},"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB, MedDRA, MedGen, ORDO, DO, GARD, etc. It provides a hierarchical structure which can be used for classification or \"rolling up\" diseases to higher level groupings.","examples":["MONDO:0000115","MONDO:0002345","MONDO:0011571","MONDO:0020035","MONDO:0020920","MONDO:0004627","MONDO:0005480","MONDO:0010852","MONDO:0002053","MONDO:0015758"],"keywords":["Phenotype"],"name":"MONDO","pattern":"^MONDO[:_](?\\d{7})$","prefix":"Mondo","uri_format":"https://monarchinitiative.org/MONDO:$1","xrefs":{"integbio":"nbdc02563"}},"integbio":{"description":"Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB, MedDRA, MedGen, ORDO, DO, GARD, etc. It provides a hierarchical structure which can be used for classification or \"rolling up\" diseases to higher level groupings.","homepage":"https://mondo.monarchinitiative.org/","keywords":["Health/Disease","Ontology/Terminology/Nomenclature"],"name":"Mondo Disease Ontology","prefix":"nbdc02563","publications":[{"doi":"10.1093/nar/gkz997","pubmed":"31701156"}],"short_names":["MONDO"],"status":"active","xrefs":{"fairsharing":"FAIRsharing.b2979t"}},"pathguide":null,"tib":null},"mondo.issue":{"prefix":"mondo.issue","name":"MONDO Issue Tracker","description":"An issue on the MONDO GitHub issue tracker","pattern":"^\\d+$","uri_format":"https://github.com/monarch-initiative/mondo/issues/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/monarch-initiative/mondo/issues","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"832","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1553,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mop":{"prefix":"mop","name":"Molecular Process Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MOP_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000079","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MOP","biocontext":"MOP","bioportal":"MOP","fairsharing":"FAIRsharing.mct09a","obofoundry":"mop","ols":"mop","ontobee":"MOP","tib":"mop","wikidata.entity":"Q81661705"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mop.owl"}],"contact":{"email":"batchelorc@rsc.org","github":"batchelorc","name":"Colin Batchelor","orcid":"0000-0001-5985-7429"},"description":"Processes at the molecular level","domain":"chemistry and biochemistry","homepage":"https://github.com/rsc-ontologies/rxno","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Molecular Process Ontology","preferred_prefix":"MOP","prefix":"mop","repository":"https://github.com/rsc-ontologies/rxno","status":"active"},"bioportal":{"contact":{"email":"batchelorc@rsc.org","name":"Colin Batchelor"},"description":"Processes at the molecular level.","homepage":"https://github.com/rsc-ontologies/rxno","name":"Molecular Process Ontology","prefix":"MOP"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mop.owl"}],"contact":{"email":"chemistry-ontologies@googlegroups.com"},"description":"MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mop/releases/2022-05-11/mop.owl"},"homepage":"https://github.com/rsc-ontologies/rxno","name":"MOP","prefix":"mop","tracker":"https://github.com/rsc-ontologies/rxno/issues","version":"2022-05-11"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MOP/8/mop.owl"}],"description":"Processes at the molecular level","homepage":"https://github.com/rsc-ontologies/rxno","name":"Molecular Process Ontology","prefix":"MOP"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Molecular Process Ontology","prefix":"MOP"},"cheminf":null,"fairsharing":{"description":"The Molecular Process Ontology (MOP) was created to work together with the Name Reaction Ontology (RXNO). MOP describes underlying molecular processes in organic reactions such as cyclization, methylation and demethylation.","homepage":"https://github.com/rsc-ontologies/rxno","keywords":["Molecular Chemistry","Reaction data"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Molecular Process Ontology","prefix":"FAIRsharing.mct09a","short_names":["MOP"]},"biocontext":{"prefix":"MOP","uri_format":"http://purl.obolibrary.org/obo/MOP_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mop.owl"}],"contact":{"email":"chemistry-ontologies@googlegroups.com"},"description":"MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mop/releases/2022-05-11/mop.owl"},"homepage":"https://github.com/rsc-ontology/rxno","keywords":["NFDI4CHEM","NFDI4CAT","chemistry"],"name":"MOP","prefix":"mop","tracker":"https://github.com/rsc-ontology/rxno/issues"}},"morpheus":{"prefix":"morpheus","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"morpheus"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n","examples":["M0001"],"extras":{"miriam_id":"00000725","namespaceEmbeddedInLui":false},"homepage":"https://morpheus.gitlab.io/","name":"Morpheus model repository","pattern":"^M[0-9]{4,}$","prefix":"morpheus","status":"active","uri_format":"https://morpheus.gitlab.io/models/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mosaic":{"prefix":"mosaic","name":"MOSAiC Ontology","description":"An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io).","pattern":"^\\d{8}$","uri_format":"https://purl.dataone.org/odo/MOSAIC_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ontologies.dataone.org/MOSAiC.html","repository":"https://github.com/DataONEorg/sem-prov-ontologies","contact":{"name":"Bryce Mecum","orcid":"0000-0002-0381-3766","email":"brycemecum@gmail.com","github":"amoeba"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00005643","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://ontologies.dataone.org/MOSAiC.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MOSAIC","bioportal":"MOSAIC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Harry Caufield","orcid":"0000-0001-5705-7831","email":"j.harry.caufield@gmail.com","github":"caufieldjh"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":636,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jones@nceas.ucsb.edu","name":"Matt Jones"},"description":"Ontology to support Semantic Annotation of MOSAiC datasets housed in the Arctic Data Center (https://arcticdata.io).","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"The MOSAiC Ontology","prefix":"MOSAIC","version":"Version 1.0.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MOSAIC/4/mosaic.owl"}],"description":"Ontology to support Semantic Annotation of MOSAiC datasets housed in the Arctic Data Center (https://arcticdata.io).","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"The MOSAiC Ontology","prefix":"MOSAIC","version":"Version 1.0.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mp":{"prefix":"mp","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MP_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"nextprot","name":"neXtProt MP Browser","description":"The neXtProt endpoint for exploring MP","homepage":"https://www.nextprot.org","uri_format":"https://www.nextprot.org/term/MP:$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MP","bartoc":"20697","biocontext":"MP","bioportal":"MP","fairsharing":"FAIRsharing.kg1x4z","miriam":"mp","n2t":"mp","obofoundry":"mp","ols":"mp","ontobee":"MP","prefixcommons":"mp","togoid":"Mp","wikidata.entity":"Q81661707"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25825651","doi":"10.1186/s13326-015-0009-1","pmc":"PMC4378007","title":"Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens","year":2015},{"pubmed":"22961259","doi":"10.1007/s00335-012-9421-3","pmc":"PMC3463787","title":"The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data","year":2012},{"pubmed":"20052305","doi":"10.1002/wsbm.44","pmc":"PMC2801442","title":"The mammalian phenotype ontology: enabling robust annotation and comparative analysis","year":2009},{"pubmed":"15642099","doi":"10.1186/gb-2004-6-1-r7","pmc":"PMC549068","title":"The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information","year":2004},{"pubmed":"15642099","doi":"10.1186/gb-2004-6-1-r7","pmc":null,"title":"The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information","year":2005},{"pubmed":"20052305","doi":"10.1002/wsbm.44","pmc":null,"title":"The mammalian phenotype ontology: enabling robust annotation and comparative analysis","year":2010},{"pubmed":"22961259","doi":"10.1007/s00335-012-9421-3","pmc":null,"title":"The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data","year":2012},{"pubmed":"25825651","doi":"10.1186/s13326-015-0009-1","pmc":null,"title":"Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens","year":2015},{"pubmed":"40963406","doi":null,"pmc":null,"title":"Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery","year":null},{"pubmed":"22961259","doi":null,"pmc":null,"title":"The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data","year":null},{"pubmed":"25825651","doi":null,"pmc":null,"title":"Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.","examples":["0005452"],"extras":{"miriam_id":"00000580","namespaceEmbeddedInLui":true},"homepage":"https://bioportal.bioontology.org/ontologies/MP","name":"Mammalian Phenotype Ontology","pattern":"^MP:\\d{7}$","prefix":"mp","providers":[{"code":"","description":"Mammalian Phenotype Ontology at The Jackson Lab","homepage":"http://www.informatics.jax.org/","name":"Mammalian Phenotype Ontology at The Jackson Lab","uri_format":"http://www.informatics.jax.org/searches/Phat.cgi?id=MP:$1"}],"status":"active","uri_format":"https://bioportal.bioontology.org/ontologies/MP/MP:$1"},"n2t":{"description":"The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.","examples":["0005452"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://bioportal.bioontology.org/ontologies/MP","name":"Mammalian Phenotype Ontology through BioPortal","pattern":"^MP:\\d{7}$","prefix":"mp","uri_format":"https://bioportal.bioontology.org/ontologies/MP/MP:$1"},"prefixcommons":{"description":"The Mammalian Phenotype Ontology is under development as a community effort to provide standard terms for annotating mammalian phenotypic data.","examples":["MP:0000001"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/MP#$1"]},"homepage":"http://www.informatics.jax.org/searches/MP_form.shtml","keywords":["obo","phenotype","mammalian"],"name":"Mammalian phenotype","pattern":"^MP:\\d+$","prefix":"mp","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mp:$1"}],"uri_format":"http://www.informatics.jax.org/searches/Phat.cgi?id=$1","xrefs":{"bioportal":"1025"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["chiro","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mp.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/mp.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/mp.json"}],"contact":{"email":"pheno@jax.org","github":"sbello","name":"Sue Bello","orcid":"0000-0003-4606-0597"},"description":"Standard terms for annotating mammalian phenotypic data.","domain":"phenotype","homepage":"https://www.informatics.jax.org/vocab/mp_ontology/","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"logo":"https://raw.githubusercontent.com/mgijax/mammalian-phenotype-ontology/main/logo/2024_MP_logo_RGB_ICON_color.png","name":"Mammalian Phenotype Ontology","preferred_prefix":"MP","prefix":"mp","publications":[{"pubmed":"40963406","title":"Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery"},{"pubmed":"22961259","title":"The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data"},{"pubmed":"25825651","title":"Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens"}],"repository":"https://github.com/mgijax/mammalian-phenotype-ontology","status":"active","taxon":{"identifier":"40674","name":"Mammalia","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"pheno@jax.org","name":"JAX phenotype list"},"description":"Standard terms for annotating mammalian phenotypic data.","homepage":"http://www.informatics.jax.org/searches/MP_form.shtml","name":"Mammalian Phenotype Ontology","prefix":"MP","version":"2026-03-24"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mp/mp-international.owl"}],"description":"The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Anna V. Anagnostopoulos, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system. This ontology is currently under development. Weekly updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Japanese labels of MP were created by the MP Japanese Translation Project (https://github.com/dbcls/MP_Japanese). Questions, comments and suggestions are welcome, and should be directed to pheno@jax.org, Susan.Bello@jax.org or to GitHub tracker (https://github.com/mgijax/mammalian-phenotype-ontology/issues) MGD is funded by NIH/NHGRI grant HG000330.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mp/releases/2026-03-24/mp-international.owl"},"homepage":"https://www.informatics.jax.org/vocab/mp_ontology/","name":"The Mammalian Phenotype Ontology","prefix":"mp","tracker":"https://github.com/mgijax/mammalian-phenotype-ontology/issues","version":"2026-03-24"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MP/139/mp.owl"}],"description":"Standard terms for annotating mammalian phenotypic data.","homepage":"https://www.informatics.jax.org/vocab/mp_ontology/","name":"Mammalian Phenotype Ontology","prefix":"MP"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mammalian Phenotype Ontology","prefix":"MP"},"cheminf":null,"fairsharing":{"contact":{"email":"susan.bello@jax.org","name":"Susan M. Bello","orcid":"0000-0003-4606-0597"},"description":"The observable morphological, physiological, behavioral and other characteristics of mammalian organisms that are manifested through development and lifespan.","homepage":"https://www.informatics.jax.org/vocab/mp_ontology/","keywords":["Life Science","Physiology","Developmental Biology","behavior","phenotype"],"license":{"url":"http://www.informatics.jax.org/mgihome/other/copyright.shtml"},"name":"Mammalian Phenotype Ontology","prefix":"FAIRsharing.kg1x4z","publications":[{"doi":"10.1186/gb-2004-6-1-r7","pubmed":"15642099","title":"The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information","url":"http://doi.org/10.1186/gb-2004-6-1-r7","year":2005},{"doi":"10.1002/wsbm.44","pubmed":"20052305","title":"The mammalian phenotype ontology: enabling robust annotation and comparative analysis","url":"http://doi.org/10.1002/wsbm.44","year":2010},{"doi":"10.1007/s00335-012-9421-3","pubmed":"22961259","title":"The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data","url":"http://doi.org/10.1007/s00335-012-9421-3","year":2012},{"doi":"10.1186/s13326-015-0009-1","pubmed":"25825651","title":"Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens","url":"http://doi.org/10.1186/s13326-015-0009-1","year":2015}],"repository":"https://github.com/obophenotype/mammalian-phenotype-ontology","short_names":["MP"]},"biocontext":{"prefix":"MP","uri_format":"http://purl.obolibrary.org/obo/MP_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Anna, Anagnostopoulos, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system. This ontology is currently under development. Weekly updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Japanese labels of MP were created by the MP Japanese Translation Project (https://github.com/dbcls/MP_Japanse). Questions, comments and suggestions are welcome, and should be directed to pheno@jax.org, Susan.Bello@jax.org or to GitHub tracker (https://github.com/mgijax/mammalian-phenotype-ontology/issues) MGD is funded by NIH/NHGRI grant HG000330.","homepage":"https://www.informatics.jax.org/vocab/mp_ontology","license":{"spdx":"CC-BY-4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Mammalian Phenotype Ontology","prefix":"20697","short_names":["MP"]},"rrid":null,"lov":null,"zazuko":null,"togoid":{"examples":["MP:0000600","MP:0001716","MP:0001698","MP:0001092","MP:0000961","MP:0000245","MP:0000828","MP:0000826","MP:0005039","MP:0002840"],"keywords":["Phenotype"],"name":"Mammalian Phenotype Ontology","pattern":"^MP[:_](?\\d{7})$","prefix":"Mp","uri_format":"http://identifiers.org/mp/MP:$1"},"integbio":null,"pathguide":null,"tib":null},"mpath":{"prefix":"mpath","name":null,"description":null,"pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/MPATH_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"728","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MPATH","biocontext":"MPATH","bioportal":"MPATH","fairsharing":"FAIRsharing.3wbgm0","obofoundry":"mpath","ols":"mpath","ontobee":"MPATH","prefixcommons":"mpath","wikidata.entity":"Q55118458"},"synonyms":["MPATH"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20587689","doi":"10.1177/0300985810374845","pmc":"PMC3038412","title":"Pathbase and the MPATH ontology. Community resources for mouse histopathology","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes","examples":["MPATH_606"],"homepage":"http://www.pathbase.net","keywords":["obo","phenotype","mouse"],"name":"Mouse pathology","pattern":"^MPATH_\\d+$","prefix":"mpath","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mpath:$1"}],"xrefs":{"bioportal":"1031"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mpath.owl"}],"contact":{"email":"pns12@hermes.cam.ac.uk","github":"PaulNSchofield","name":"Paul Schofield","orcid":"0000-0002-5111-7263"},"description":"A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes","domain":"health","homepage":"http://www.pathbase.net","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Mouse pathology ontology","preferred_prefix":"MPATH","prefix":"mpath","repository":"https://github.com/PaulNSchofield/mpath","status":"active","taxon":{"identifier":"10088","name":"Mus","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"pns12@cam.ac.uk","name":"Mouse_pathology Administrators"},"description":"A structured controlled vocabulary of mutant and transgenic mouse pathological lesions and processes","homepage":"http://www.pathbase.net","name":"Mouse Pathology Ontology","prefix":"MPATH","version":"2020-05-19"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mpath.owl"}],"description":"A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes","extras":{"version.iri":"http://purl.obolibrary.org/obo/mpath/2020-05-19/mpath.owl"},"homepage":"http://www.pathbase.net","name":"Mouse pathology ontology","prefix":"mpath","tracker":"https://github.com/PaulNSchofield/mpath/issues","version":"2020-05-19"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MPATH/173/mpath.owl"}],"description":"A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes","homepage":"http://www.pathbase.net","name":"Mouse pathology ontology","prefix":"MPATH"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["ontology"],"name":"Mouse pathology","prefix":"MPATH"},"cheminf":null,"fairsharing":{"contact":{"email":"pns12@cam.ac.uk","name":"Paul Schofield","orcid":"0000-0002-5111-7263"},"description":"Mouse PATHology (MPATH) ontology is a structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes. This resource was developed by the Pathology Consortium of Pathbase (www.pathbase.net).","homepage":"http://eulep.pdn.cam.ac.uk/Pathology_Ontology/index.php","keywords":["Anatomy","Biomedical Science","mutation","histological assay","phenotype","disease","strain"],"name":"Mouse PATHology","prefix":"FAIRsharing.3wbgm0","publications":[{"doi":"10.1177/0300985810374845","pubmed":"20587689","title":"Pathbase and the MPATH ontology. Community resources for mouse histopathology","url":"http://doi.org/10.1177/0300985810374845","year":2010}],"repository":"https://github.com/PaulNSchofield/mpath","short_names":["MPATH"]},"biocontext":{"prefix":"MPATH","uri_format":"http://purl.obolibrary.org/obo/MPATH_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mpid":{"prefix":"mpid","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Johannes B. Goll","orcid":"0000-0002-9968-4080","email":"jgoll@emmes.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MPID","miriam":"mpid","n2t":"mpid","pathguide":"559","prefixcommons":"mpi"},"synonyms":["mpidb"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18556668","doi":"10.1093/bioinformatics/btn285","pmc":"PMC2638870","title":"MPIDB: the microbial protein interaction database","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.","examples":["1776"],"extras":{"miriam_id":"00000124","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/intact/","name":"Microbial Protein Interaction Database","pattern":"^\\d+$","prefix":"mpid","status":"active","uri_format":"https://www.ebi.ac.uk/intact/query/interaction_id:MPIDB-INT-$1"},"n2t":{"description":"The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.","examples":["172"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.jcvi.org/mpidb/about.php","name":"Microbial Protein Interaction Database","pattern":"^\\d+$","prefix":"mpid","uri_format":"http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1"},"prefixcommons":{"description":"The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.","examples":["172"],"homepage":"http://www.jcvi.org/mpidb/","keywords":["interaction","protein","small molecule"],"license":{"name":"http://www.jcvi.org/cms/legal/privacy-statement","url":"http://www.jcvi.org/cms/legal/privacy-statement/"},"name":"Microbial Protein Interaction Database","pattern":"^\\d+$","prefix":"mpi","prefix_synonyms":["mpid","mpidb"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mpi:$1"}],"publications":[{"pubmed":"18556668"}],"uri_format":"http://www.jcvi.org/mpidb/interaction.php?pname=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MPID","uri_format":"http://identifiers.org/mpid/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://bioinformatics.cau.edu.cn/cgi-bin/zzd-cgi/ppi/mpid.pl","name":"Magnaporthe grisea Protein-protein Interaction Database","prefix":"559","short_names":["MPID"]},"tib":null},"mpio":{"prefix":"mpio","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MPIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000004","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MPIO","biocontext":"MPIO","bioportal":"MPIO","obofoundry":"mpio","ols":"mpio","ontobee":"MPIO","wikidata.entity":"Q81661711"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mpio.owl"}],"contact":{"email":"mbrochhausen@uams.edu","github":"mbrochhausen","name":"Mathias Brochhausen","orcid":"0000-0003-1834-3856"},"description":"An ontology of minimum information regarding potential drug-drug interaction information.","domain":"health","homepage":"https://github.com/MPIO-Developers/MPIO","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Minimum PDDI Information Ontology","preferred_prefix":"MPIO","prefix":"mpio","repository":"https://github.com/MPIO-Developers/MPIO","status":"active"},"bioportal":{"contact":{"email":"mbrochhausen@uams.edu","name":"Mathias Brochhausen"},"description":"MPIO (Minimum PDDI Information Ontology) is an OWL representation of minimum information regarding potential drug-drug interaction information. It is based on and meant to be use in alignment with DIDEO or DINTO.","homepage":"https://github.com/MPIO-Developers/MPIO","name":"Minimum PDDI Information Ontology","prefix":"MPIO","version":"2023-10-17"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mpio.owl"}],"description":"An ontology of minimum information regarding potential drug-drug interaction information.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mpio/release/2023-10-17/mpio.owl"},"homepage":"https://github.com/MPIO-Developers/MPIO","name":"Minimum PDDI Information Ontology","prefix":"mpio","tracker":"https://github.com/MPIO-Developers/MPIO/issues","version":"2023-10-17"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MPIO/5/mpio.owl"}],"description":"An ontology of minimum information regarding potential drug-drug interaction information.","homepage":"https://github.com/MPIO-Developers/MPIO","name":"Minimum PDDI Information Ontology","prefix":"MPIO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Minimum PDDI Information Ontology","prefix":"MPIO"},"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MPIO","uri_format":"http://purl.obolibrary.org/obo/MPIO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mro":{"prefix":"mro","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MRO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000634","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MRO","biocontext":"MRO","fairsharing":"FAIRsharing.k893xa","obofoundry":"mro","ols":"mro","ontobee":"MRO","wikidata.entity":"Q81661712"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26759709","doi":"10.1186/s13326-016-0045-5","pmc":"PMC4709943","title":"An ontology for major histocompatibility restriction","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mro.owl"}],"contact":{"email":"bpeters@lji.org","github":"bpeters42","name":"Bjoern Peters","orcid":"0000-0002-8457-6693"},"description":"An ontology for Major Histocompatibility Complex (MHC) restriction in experiments","domain":"chemistry and biochemistry","homepage":"https://github.com/IEDB/MRO","license":{"name":"CC BY 3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"MHC Restriction Ontology","preferred_prefix":"MRO","prefix":"mro","repository":"https://github.com/IEDB/MRO","status":"active"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/mro.owl"}],"description":"The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.","extras":{"version.iri":"http://purl.obolibrary.org/obo/mro/2026-02-10/mro.owl"},"homepage":"https://github.com/IEDB/MRO","name":"MHC Restriction Ontology","prefix":"mro","tracker":"https://github.com/IEDB/MRO/issues","version":"2026-02-10"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MRO/67/mro.owl"}],"description":"An ontology for Major Histocompatibility Complex (MHC) restriction in experiments","homepage":"https://github.com/IEDB/MRO","name":"MHC Restriction Ontology","prefix":"MRO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"MHC Restriction Ontology","prefix":"MRO"},"cheminf":null,"fairsharing":{"description":"MHC molecules form a highly diverse family of proteins that play a key role in cellular immune recognition. No consistent nomenclature exists across different vertebrate species. To correctly represent MHC related data in The Immune Epitope Database (IEDB), we built upon a previously established MHC ontology (MaHCO) and created MRO to represent MHC molecules as they relate to immunological experiments. MRO models MHC protein chains from 16 species, deals with different approaches used to identify MHC, such as direct sequencing verses serotyping, relates engineered MHC molecules to naturally occurring ones, connects genetic loci, alleles, protein chains and multichain proteins, and establishes evidence codes for MHC restriction.","homepage":"https://github.com/IEDB/MRO","keywords":["Immunology","Major Histocompatibility Complex","immune system"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"MHC Restriction Ontology","prefix":"FAIRsharing.k893xa","publications":[{"doi":"10.1186/s13326-016-0045-5","pubmed":"26759709","title":"An ontology for major histocompatibility restriction","url":"http://doi.org/10.1186/s13326-016-0045-5","year":2016}],"repository":"https://github.com/IEDB/MRO/issues","short_names":["MRO"]},"biocontext":{"prefix":"MRO","uri_format":"http://purl.obolibrary.org/obo/MRO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ms":{"prefix":"ms","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MS_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1000560","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MS","biocontext":"MS","bioportal":"MS","miriam":"ms","n2t":"ms","obofoundry":"ms","ols":"ms","ontobee":"MS","tib":"ms","wikidata.entity":"Q81661714"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"23482073","doi":"10.1093/database/bat009","pmc":"PMC3594986","title":"The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary","year":2013},{"pubmed":"23482073","doi":null,"pmc":null,"title":"The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.","examples":["1000001"],"extras":{"miriam_id":"00000590","namespaceEmbeddedInLui":true},"homepage":"https://bioportal.bioontology.org/ontologies/MS","name":"Mass Spectrometry Controlled Vocabulary","pattern":"^MS:\\d{7}$","prefix":"ms","status":"active","uri_format":"http://purl.bioontology.org/ontology/MS/MS:$1"},"n2t":{"description":"The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.","examples":["1000001"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://bioportal.bioontology.org/ontologies/MS","name":"Mass Spectrometry Controlled Vocabulary through BioPortal","pattern":"^MS:\\d{7}$","prefix":"ms","uri_format":"http://purl.bioontology.org/ontology/MS/MS:$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"obo","url":"http://purl.obolibrary.org/obo/ms.obo"},{"type":"owl","url":"http://purl.obolibrary.org/obo/ms.owl"}],"contact":{"email":"joshua.adam.klein@gmail.com","github":"mobiusklein","name":"Joshua Klein","orcid":"0000-0003-1279-6838"},"depends_on":["pato","uo"],"description":"A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.","domain":"investigations","homepage":"http://www.psidev.info/groups/controlled-vocabularies","license":{"name":"CC BY 3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Mass spectrometry ontology","preferred_prefix":"MS","prefix":"ms","publications":[{"pubmed":"23482073","title":"The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary."}],"repository":"https://github.com/HUPO-PSI/psi-ms-CV","status":"active"},"bioportal":{"contact":{"email":"gerhard.mayer@rub.de","name":"Gerhard Mayer"},"description":"A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Developed by the HUPO Proteomics Standards Initiative (PSI).","homepage":"http://www.psidev.info/groups/controlled-vocabularies","name":"Mass Spectrometry Ontology","prefix":"MS","publications":[{"url":"http://database.oxfordjournals.org/content/2013/bat009.long"}],"version":"4.1.195"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ms.owl"}],"contact":{"email":"psidev-ms-vocab@lists.sourceforge.net"},"description":"A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ms/4.1.243/ms.owl"},"homepage":"http://www.psidev.info/groups/controlled-vocabularies","name":"Mass spectrometry ontology","prefix":"ms","tracker":"https://github.com/HUPO-PSI/psi-ms-CV/issues","version":"4.1.243"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MS/236/ms.owl"}],"description":"A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.","homepage":"http://www.psidev.info/groups/controlled-vocabularies","name":"Mass spectrometry ontology","prefix":"MS"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mass spectrometry ontology","prefix":"MS"},"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MS","uri_format":"http://purl.obolibrary.org/obo/MS_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ms.owl"}],"description":"A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ms/4.1.243/ms.owl"},"homepage":"http://www.psidev.info/groups/controlled-vocabularies","keywords":["NFDI4CHEM","DataPLANT","NFDI4CAT","chemistry"],"name":"Mass Spectrometry","prefix":"ms","tracker":"https://github.com/HUPO-PSI/psi-ms-CV/issues"}},"msigdb":{"prefix":"msigdb","name":"Molecular Signatures Database","description":"The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can","pattern":"^M\\d+$","uri_format":"https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"biopragmatics","name":"MMSigDB from Biopragmatics","description":"An OBO to Website of MMSigDB","homepage":"https://biopragmatics.github.io/providers/msigdb/","uri_format":"https://biopragmatics.github.io/providers/msigdb/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://www.gsea-msigdb.org","repository":null,"contact":{"name":"Jill P. Mesirov","orcid":"0000-0002-9755-2818","email":"jmesirov@ucsd.edu","github":null},"contact_extras":null,"contact_group_email":"gsea-team@broadinstitute.org","contact_page":null,"owners":null,"example":"M1","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/msigdb/msigdb.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/msigdb/msigdb.obo.gz","download_json":"https://w3id.org/biopragmatics/resources/msigdb/msigdb.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"MSigDB","integbio":"nbdc02550"},"synonyms":["msig"],"keywords":["gene family","gene group","gene set","pathway","reaction"],"domain":"pathway","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.gsea-msigdb.org/gsea/images/GSEA-logo.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"MSigDB","uri_format":"https://www.gsea-msigdb.org/gsea/msigdb/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. It contains 9 major collections of the gene sets;\nH: hallmark gene sets\nC1: positional gene sets\nC2: curated gene sets\nC3: regulatory target gene sets\nC4: computational gene sets\nC5: ontology gene sets\nC6: oncogenic signature gene sets\nC7: immunologic signature gene sets\nC8: cell type signature gene sets","homepage":"http://www.gsea-msigdb.org/gsea/msigdb/index.jsp","keywords":["Genome/Gene","Health/Disease","Expression","Interaction/Pathway"],"name":"Molecular Signatures Database","prefix":"nbdc02550","publications":[{"doi":"10.1073/pnas.0506580102","pubmed":"16199517"}],"short_names":["MSigDB"],"status":"active"},"pathguide":null,"tib":null},"msio":{"prefix":"msio","name":"Metabolomics Standards Initiative Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MSIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000111","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.4c7f91","ols":"msio","tib":"msio"},"synonyms":null,"keywords":["nmr"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl"}],"description":"an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.","homepage":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO","name":"Metabolomics Standards Initiative Ontology (MSIO)","prefix":"msio","uri_format":"http://purl.obolibrary.org/obo/MSIO_$1","version":"1.0.1"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"philippe.rocca-serra@oerc.ox.ac.uk","name":"Philippe Rocca-Serra","orcid":"0000-0001-9853-5668"},"description":"The Metabolomics Standards Initiative Ontology (MSIO) aims to support metabolomic experimental annotations for mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy techniques to identify, measure and quantify small molecules known as metabolites. MSIO covers metabolite profiling, targeted or untargeted, and tracer based applications.","homepage":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO","keywords":["Metabolomics","Omics","Mass spectrum","Experimental measurement","Annotation","Data analysis","nuclear magnetic resonance spectroscopy","Functional Magnetic Resonance Imaging"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Metabolomics Standards Initiative Ontology","prefix":"FAIRsharing.4c7f91","publications":[{"doi":"10.1007/s11306-007-0069-z","title":"Metabolomics standards initiative: ontology working group work in progress","url":"http://dx.doi.org/10.1007/s11306-007-0069-z","year":2007}],"repository":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO","short_names":["MSIO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl"}],"description":"an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.","homepage":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO/","keywords":["DataPLANT","life sciences, biology"],"name":"Metabolomics Standards Initiative Ontology (MSIO)","prefix":"msio","tracker":"https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO/issues/","uri_format":"http://purl.obolibrary.org/obo/msio.owl$1"}},"mtbd":{"prefix":"mtbd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"mtbd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors.","examples":["1374"],"homepage":"http://tumor.informatics.jax.org","keywords":["gene expression","DNA"],"name":"Mouse Tumor Biology Database","pattern":"^\\d+$","prefix":"mtbd","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mtbd:$1"}],"uri_format":"http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mth":{"prefix":"mth","name":"Metathesaurus Names","description":"The Unified Medical Language System® (UMLS®) Metathesaurus (MTH) was developed and is maintained by the U.S. National Library of Medicine (NLM). MTH contains concept names, attributes, relationships, and other data that were created by NLM to facilitate construction of the UMLS Metathesaurus.","pattern":"^U\\d+$","uri_format":"https://uts.nlm.nih.gov/uts/umls/vocabulary/MTH/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MTH/index.html","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"U001388","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"hl7":"2.16.840.1.113883.6.189"},"synonyms":["umls.mth"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":["umls","mondo"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1573,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"UMLS Metathesaurus. Bethesda, MD: National Library of Medicine.","name":"Metathesaurus Names","preferred_prefix":"MTH","prefix":"2.16.840.1.113883.6.189","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"multicellds":{"prefix":"multicellds","name":"MultiCellDS","description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.","pattern":null,"uri_format":"http://multicellds.org/MultiCellDB/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://multicellds.org/MultiCellDB.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MCDS_S_0000000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"multicellds.cell_line":{"prefix":"multicellds.cell_line","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"multicellds","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MULTICELLDS.CELL_LINE","miriam":"multicellds.cell_line","n2t":"multicellds.cell_line"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.","examples":["MCDS_L_0000000001"],"extras":{"miriam_id":"00000584","namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDS Digital Cell Line","pattern":"^MCDS_L_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.cell_line","status":"active","uri_format":"http://multicellds.org/MultiCellDB/$1"},"n2t":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.","examples":["MCDS_L_0000000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDS Digital Cell Line at Keck School of Medicine","pattern":"^MCDS_L_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.cell_line","uri_format":"http://multicellds.org/MultiCellDB/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MULTICELLDS.CELL_LINE","uri_format":"http://identifiers.org/multicellds.cell_line/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"multicellds.collection":{"prefix":"multicellds.collection","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"multicellds","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MULTICELLDS.COLLECTION","miriam":"multicellds.collection","n2t":"multicellds.collection"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).","examples":["MCDS_C_0000000001"],"extras":{"miriam_id":"00000582","namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDS collection","pattern":"^MCDS_C_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.collection","status":"active","uri_format":"http://multicellds.org/MultiCellDB/$1"},"n2t":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).","examples":["MCDS_C_0000000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDScollection at Keck School of Medicine","pattern":"^MCDS_C_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.collection","uri_format":"http://multicellds.org/MultiCellDB/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MULTICELLDS.COLLECTION","uri_format":"http://identifiers.org/multicellds.collection/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"multicellds.snapshot":{"prefix":"multicellds.snapshot","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"multicellds","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MULTICELLDS.SNAPSHOT","miriam":"multicellds.snapshot","n2t":"multicellds.snapshot"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.","examples":["MCDS_S_0000000001"],"extras":{"miriam_id":"00000583","namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDS Digital snapshot","pattern":"^MCDS_S_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.snapshot","status":"active","uri_format":"http://multicellds.org/MultiCellDB/$1"},"n2t":{"description":"MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.","examples":["MCDS_S_0000000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://multicellds.org/MultiCellDB.php","name":"MultiCellDS snapshot at Keck School of Medicine","pattern":"^MCDS_S_[a-zA-Z0-9]{1,10}$","prefix":"multicellds.snapshot","uri_format":"http://multicellds.org/MultiCellDB/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MULTICELLDS.SNAPSHOT","uri_format":"http://identifiers.org/multicellds.snapshot/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mvx":{"prefix":"mvx","name":"Manufacturers of Vaccines","description":"The CDC's National Center for Immunization and Respiratory Diseases ([NCIRD](https://www.cdc.gov/ncird/)) developed and maintains HL7 Table 0227, Manufacturers of Vaccines (MVX). It includes both active and inactive manufacturers of vaccines in the US. Inactive MVX codes allow transmission of historical immunization records. When [MVX code is paired with a CVX code](https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=tradename) (vaccine administered code), the specific trade named vaccine may be indicated.","pattern":"^\\w+$","uri_format":"https://phinvads.cdc.gov/vads/ViewCodeSystemConcept.action?oid=2.16.840.1.113883.12.227&code=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=mvx","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ASZ","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"hl7":"2.16.840.1.113883.6.60"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Lindsey N. Anderson","orcid":"0000-0002-8741-7823","email":"lindsey.anderson@pnnl.gov","github":"lnanderson"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":986,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"CDC Vaccine Manufacturer CodesDO NOT USEThis OID was setup solely for use in the RRF research project in 1999. The correct OID for mvx is 2.16.840.1.113883.12.227","name":"MVX","preferred_prefix":"mvx","prefix":"2.16.840.1.113883.6.60","status":"inactive"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mw.mgp":{"prefix":"mw.mgp","name":"Human Metabolome Gene/Protein Database","description":"The Human Metabolome Gene/Protein Database (MGP) of metabolome-related genes and proteins contains data for over 7300 genes and over 15,500 proteins. [from homepage]","pattern":null,"uri_format":"https://www.metabolomicsworkbench.org/databases/proteome/MGP_detail.php?MGP_ID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.metabolomicsworkbench.org/databases/proteome/MGP.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MGP005034","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["gene","protein"],"domain":"gene","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1860,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mw.project":{"prefix":"mw.project","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MW.PROJECT","miriam":"mw.project","n2t":"mw.project"},"synonyms":null,"keywords":null,"domain":"project","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).","examples":["PR000001"],"extras":{"miriam_id":"00000647","namespaceEmbeddedInLui":false},"homepage":"http://www.metabolomicsworkbench.org/","name":"Metabolomics Workbench Project","pattern":"^PR[0-9]{6}$","prefix":"mw.project","status":"active","uri_format":"http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"},"n2t":{"description":"Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).","examples":["PR000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.metabolomicsworkbench.org/","name":"Metabolomics Workbench Project","pattern":"^PR[0-9]{6}$","prefix":"mw.project","uri_format":"http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MW.PROJECT","uri_format":"http://identifiers.org/mw.project/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mw.refmet":{"prefix":"mw.refmet","name":"A Reference list of Metabolite names","description":"The main objective of RefMet is to provide a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. [from homepage]","pattern":null,"uri_format":"https://www.metabolomicsworkbench.org/databases/refmet/refmet_details.php?REFMET_ID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.metabolomicsworkbench.org/databases/refmet/index.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"RM0108606","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","metabolite","molecule","species","taxonomy"],"domain":"metabolite","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1860,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mw.structure":{"prefix":"mw.structure","name":"Metabolomics Workbench Metabolite Database","description":"The Metabolomics Workbench Metabolite Database contains structures and annotations of biologically relevant metabolites. As of 03/23/26, the database contains 175556 entries, collected from various public sources. [from homepage]","pattern":null,"uri_format":"https://www.metabolomicsworkbench.org/data/StructureData.php?RegNo=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.metabolomicsworkbench.org/databases/metabolitedatabase.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"4884","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","metabolite","molecule"],"domain":"metabolite","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1860,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mw.study":{"prefix":"mw.study","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MW.STUDY","miriam":"mw.study","n2t":"mw.study"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).","examples":["ST000900"],"extras":{"miriam_id":"00000646","namespaceEmbeddedInLui":false},"homepage":"http://www.metabolomicsworkbench.org/","name":"Metabolomics Workbench Study","pattern":"^ST[0-9]{6}$","prefix":"mw.study","providers":[{"code":"omicsdi","description":"Metabolomics Workbench Study through OmicsDI","homepage":"https://www.omicsdi.org/","name":"Metabolomics Workbench Study through OmicsDI","uri_format":"https://www.omicsdi.org/dataset/metabolomics_workbench/$1"}],"status":"active","uri_format":"http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"},"n2t":{"description":"Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).","examples":["ST000900"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.metabolomicsworkbench.org/","name":"Metabolomics Workbench Study","pattern":"^ST[0-9]{6}$","prefix":"mw.study","uri_format":"http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MW.STUDY","uri_format":"http://identifiers.org/mw.study/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mwo":{"prefix":"mwo","name":"NFDI MatWerk Ontology","description":"NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility. (from repository)","pattern":"^\\d{7}$","uri_format":"http://purls.helmholtz-metadaten.de/mwo/mwo_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/ISE-FIZKarlsruhe/mwo","repository":"https://github.com/ISE-FIZKarlsruhe/mwo","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001109","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/ISE-FIZKarlsruhe/mwo/raw/refs/heads/main/mwo.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"MWO","bioportal":"MWO","tib":"mwo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"ho_beygi@yahoo.com","name":"Hossein Beygi Nasrabadi"},"description":"NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility., The MatWerk ontology represents research data and related activities of the MSE community. The mwo v3 reuses BFO2020 and NFDi core ontologies and focuses on:\nA) Consortium structure: NFDI MatWerk consortium, its structures (task areas, and participant projects), researches, and organizations\nB) NFDI resources: software, data portals, scientific publications, published datasets, and ontologies\nC) NFDI MatWerk services, events, educational cources, and international collabrations\nD) MSE related instruments, materials, processes, and properties.\nFurther infomration can be found at GitHub: https://github.com/ISE-FIZKarlsruhe/mwo","license":{"name":"CC0-1.0"},"name":"NFDI MatWerk Ontology","prefix":"MWO","version":"3.0.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/MWO/1/mwo.owl"}],"description":"NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility., The MatWerk ontology represents research data and related activities of the MSE community. The mwo v3 reuses BFO2020 and NFDi core ontologies and focuses on: A) Consortium structure: NFDI MatWerk consortium, its structures (task areas, and participant projects), researches, and organizations B) NFDI resources: software, data portals, scientific publications, published datasets, and ontologies C) NFDI MatWerk services, events, educational cources, and international collabrations D) MSE related instruments, materials, processes, and properties. Further infomration can be found at GitHub: https://github.com/ISE-FIZKarlsruhe/mwo","name":"NFDI MatWerk Ontology","prefix":"MWO","version":"3.0.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The MatWerk ontology represents research data and related activities of the MSE community. A first version of the ontology will be simplified, focusing on (i) community structure: researchers, research projects, universities, and institutions; (ii) infrastructure: software, workflows, ontologies, schemas, APIs, instruments, facilities, educational resources; and (iii) data: repositories, databases, scientific publications, published datasets and reference data.","extras":{"version.iri":"http://purls.helmholtz-metadaten.de/mwo/2.0.0"},"homepage":"https://nfdi-matwerk.pages.rwth-aachen.de/ta-oms/mwo/docs/index.html","keywords":["Miscellaneous","material science"],"name":"The MatWerk ontology","prefix":"mwo","tracker":"https://git.rwth-aachen.de/nfdi-matwerk/ta-oms/mwo/-/issues","uri_format":"http://purls.helmholtz-metadaten.de/mwo/$1"}},"myco":{"prefix":"myco","name":"MycoBrowser","description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.","pattern":null,"uri_format":"https://mycobrowser.epfl.ch/genes/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mycobrowser.epfl.ch","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ML0224","example_extras":["MMAR_2462","MSMEG_3769","Rv1908c"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"myco.lepra":{"prefix":"myco.lepra","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"myco","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MYCO.LEPRA","miriam":"myco.lepra","n2t":"myco.lepra","prefixcommons":"myco.lepra"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.","examples":["ML0224"],"extras":{"miriam_id":"00000217","namespaceEmbeddedInLui":false},"homepage":"https://mycobrowser.epfl.ch/","name":"MycoBrowser leprae","pattern":"^ML\\w+$","prefix":"myco.lepra","status":"active","uri_format":"https://mycobrowser.epfl.ch/genes/$1"},"n2t":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.","examples":["ML0224"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mycobrowser.epfl.ch/leprosy.html","name":"MycoBrowser leprae at Global Health Institute","pattern":"^ML\\w+$","prefix":"myco.lepra","uri_format":"http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1"},"prefixcommons":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.","examples":["ML0224"],"homepage":"http://mycobrowser.epfl.ch/leprosy.html","keywords":["genome","sequence"],"name":"MycoBrowser leprae","pattern":"^ML\\w+$","prefix":"myco.lepra","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/myco.lepra:$1"}],"uri_format":"http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MYCO.LEPRA","uri_format":"http://identifiers.org/myco.lepra/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"myco.marinum":{"prefix":"myco.marinum","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"myco","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MYCO.MARINUM","miriam":"myco.marinum","n2t":"myco.marinum","prefixcommons":"myco.marinum"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.","examples":["MMAR_2462"],"extras":{"miriam_id":"00000218","namespaceEmbeddedInLui":false},"homepage":"https://mycobrowser.epfl.ch","name":"MycoBrowser marinum","pattern":"^MMAR\\_\\d+$","prefix":"myco.marinum","status":"active","uri_format":"https://mycobrowser.epfl.ch/genes/$1"},"n2t":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.","examples":["MMAR_2462"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mycobrowser.epfl.ch/marinolist.html","name":"MycoBrowser marinum at Global Health Institute","pattern":"^MMAR\\_\\d+$","prefix":"myco.marinum","uri_format":"http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1"},"prefixcommons":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.","examples":["MMAR_2462"],"homepage":"http://mycobrowser.epfl.ch/marinolist.html","keywords":["genome","sequence"],"name":"MycoBrowser marinum","pattern":"^MMAR\\_\\d+$","prefix":"myco.marinum","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/myco.marinum:$1"}],"uri_format":"http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MYCO.MARINUM","uri_format":"http://identifiers.org/myco.marinum/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"myco.smeg":{"prefix":"myco.smeg","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"myco","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MYCO.SMEG","miriam":"myco.smeg","n2t":"myco.smeg","prefixcommons":"myco.smeg"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.","examples":["MSMEG_3769"],"extras":{"miriam_id":"00000219","namespaceEmbeddedInLui":false},"homepage":"https://mycobrowser.epfl.ch","name":"MycoBrowser smegmatis","pattern":"^MSMEG\\w+$","prefix":"myco.smeg","status":"active","uri_format":"https://mycobrowser.epfl.ch/genes/$1"},"n2t":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.","examples":["MSMEG_3769"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mycobrowser.epfl.ch/smegmalist.html","name":"MycoBrowser smegmatis at Global Health Institute","pattern":"^MSMEG\\w+$","prefix":"myco.smeg","uri_format":"http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1"},"prefixcommons":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.","examples":["MSMEG_3769"],"homepage":"http://mycobrowser.epfl.ch/smegmalist.html","keywords":["genome","sequence"],"name":"MycoBrowser smegmatis","pattern":"^MSMEG\\w+$","prefix":"myco.smeg","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/myco.smeg:$1"}],"uri_format":"http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MYCO.SMEG","uri_format":"http://identifiers.org/myco.smeg/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"myco.tuber":{"prefix":"myco.tuber","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Stewart Thomas Cole","orcid":"0000-0003-1400-5585","email":"stewart.cole@epfl.ch","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"myco","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MYCO.TUBER","miriam":"myco.tuber","n2t":"myco.tuber","ncbi":"TubercuList","prefixcommons":"tuberculist","uniprot":"DB-0106"},"synonyms":["TubercuList"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20980200","doi":"10.1016/j.tube.2010.09.006","pmc":null,"title":"The MycoBrowser portal: a comprehensive and manually annotated resource for mycobacterial genomes","year":2010},{"pubmed":"20980200","doi":"10.1016/j.tube.2010.09.006","pmc":null,"title":null,"year":null},{"pubmed":"20980200","doi":"10.1016/j.tube.2010.09.006","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.","examples":["Rv1908c"],"extras":{"miriam_id":"00000216","namespaceEmbeddedInLui":false},"homepage":"http://tuberculist.epfl.ch/","name":"MycoBrowser tuberculosis","pattern":"^Rv\\d{4}(A|B|c)?$","prefix":"myco.tuber","status":"active","uri_format":"https://mycobrowser.epfl.ch/genes/$1"},"n2t":{"description":"Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.","examples":["Rv1908c"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://tuberculist.epfl.ch/","name":"MycoBrowser tuberculosis at Global Health Institute","pattern":"^Rv\\d{4}(A|B|c)?$","prefix":"myco.tuber","uri_format":"http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1"},"prefixcommons":{"description":"The TubercuList knowledge base integrates genome details, protein information, drug and transcriptome data, mutant and operon annotation, bibliography; structural views and comparative genomics, in a structured manner required for the rational development of new diagnostic, therapeutic and prophylactic measures against tuberculosis.","examples":["Rv0115"],"homepage":"http://tuberculist.epfl.ch","keywords":["genome","protein","DNA"],"name":"Mycobacterium tuberculosis strain H37Rv genome database","pattern":"^Rv[0-9,a-z]+$","prefix":"tuberculist","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tuberculist:$1"}],"uri_format":"http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["Rv3322c"],"homepage":"http://tuberculist.epfl.ch/","name":"TubercuList knowledge base","prefix":"TubercuList"},"uniprot":{"homepage":"https://mycobrowser.epfl.ch/","keywords":["Organism-specific databases"],"name":"Mycobacterium tuberculosis strain H37Rv genome database","prefix":"DB-0106","publications":[{"doi":"10.1016/j.tube.2010.09.006","pubmed":"20980200"}],"short_names":["TubercuList"],"uri_format":"https://mycobrowser.epfl.ch/genes/$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MYCO.TUBER","uri_format":"http://identifiers.org/myco.tuber/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"mycobank":{"prefix":"mycobank","name":null,"description":null,"pattern":null,"uri_format":"https://www.mycobank.org/page/Name%20details%20page/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Vincent Robert","orcid":"0000-0002-9370-4677","email":"vrobert@unistra.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MYCOBANK","integbio":"nbdc01815","miriam":"mycobank","n2t":"mycobank","ncbi":"MycoBank","prefixcommons":"mycobank","re3data":"r3d100011222"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24563843","doi":"10.5598/imafungus.2013.04.02.16","pmc":"PMC3905949","title":"MycoBank gearing up for new horizons","year":2013},{"pubmed":"24563843","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"24563843","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Carlos Moreno","orcid":"0000-0003-0066-1717","email":"carlosm@ebi.ac.uk","github":"CarMoreno"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.","examples":["349124"],"extras":{"miriam_id":"00000178","namespaceEmbeddedInLui":false},"homepage":"http://www.mycobank.org/","name":"MycoBank","pattern":"^\\d+$","prefix":"mycobank","status":"active","uri_format":"http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1"},"n2t":{"description":"MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.","examples":["349124"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.mycobank.org/","name":"MycoBank at Fungal Biodiversity Centre","pattern":"^\\d+$","prefix":"mycobank","uri_format":"http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1"},"prefixcommons":{"description":"MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.","examples":["349124"],"homepage":"http://www.mycobank.org","keywords":["classification"],"name":"Fungal Nomenclature and Species Bank","pattern":"^\\d+$","prefix":"mycobank","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/mycobank:$1"}],"uri_format":"http://www.mycobank.org/MycoTaxo.aspx?Link=T&Rec=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["8284"],"homepage":"http://www.mycobank.org","name":"Fungal Nomenclature and Species Bank","prefix":"MycoBank"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"MYCOBANK","uri_format":"http://identifiers.org/mycobank/$1"},"edam":null,"re3data":{"description":"MycoBank is an on-line database aimed as a service to the mycological and scientific society by documenting mycological nomenclatural novelties (new names and combinations) and associated data, for example descriptions and illustrations. The nomenclatural novelties will each be allocated a unique MycoBank number that can be cited in the publication where the nomenclatural novelty is introduced. These numbers will also be used by the nomenclatural database Index Fungorum, with which MycoBank is associated.","homepage":"https://www.mycobank.org/","name":"MycoBank","prefix":"r3d100011222","prefix_synonyms":["Fungal databases, nomenclature and species banks"],"xrefs":{"doi":"10.17616/R39D0Q"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"MycoBank was created for the mycological community (as well as scientific community more generally) to document new mycological names, combinations and associated data (such as descriptions and illustrations). Pairwise sequence alignments and polyphasic identifications of fungi and yeasts against curated references databases are available. Nomenclatural experts will be available to check the validity, legitimacy and linguistic correctness of the proposed names in order to avoid nomenclatural error. Deposited names can remain confidential until after publication as required. Once public, the names are accessible through MycoBank, Index Fungorum, GBIF and other international biodiversity initiatives, where they will further be linked to other databases. MycoBank will (when applicable) provide onward links to other databases containing, for example, living cultures, DNA data, reference specimens and pleomorphic names linked to the same holomorph. Authors intending to publish nomenclatural novelties are encouraged to contribute.","homepage":"http://www.mycobank.org","keywords":["Organism","Ontology/Terminology/Nomenclature","Sequence"],"name":"MycoBank","prefix":"nbdc01815","publications":[{"pubmed":"24563843"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.v8se8r"}},"pathguide":null,"tib":null},"mzspec":{"prefix":"mzspec","name":null,"description":null,"pattern":"^.+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.psidev.info/usi","repository":"https://github.com/HUPO-PSI/usi","contact":{"name":"Gerhard Mayer","orcid":"0000-0002-1767-2343","email":"gerhard.mayer@rub.de","github":"germa"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"mzspec","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"MZSPEC","fairsharing":"FAIRsharing.b549b8","miriam":"mzspec","n2t":"mzspec"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34183830","doi":"10.1038/s41592-021-01184-6","pmc":"PMC8405201","title":"Universal Spectrum Identifier for mass spectra","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Lindsey N. Anderson","orcid":"0000-0002-8741-7823","email":"lindsey.anderson@pnnl.gov","github":"lnanderson"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.","examples":["PXD002255:ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"],"extras":{"miriam_id":"00000625","namespaceEmbeddedInLui":true},"homepage":"http://proteomecentral.proteomexchange.org/","name":"Universal Spectrum Identifier","pattern":"^mzspec:(PDX|USI|PXD)[0-9]{6}:[^:]+:(scan|index|nativeId):[0-9]+(:.*)?$","prefix":"mzspec","providers":[{"code":"ebi","description":"PRIDE is a database of PRoteomics IDEntifications. It contains protein and peptide identifications (including details of post-translational modifications) together with the mass spectrometric evidence supporting these identifications. PRIDE acts as a repository for mass spectrometry data, specifically the fragment ion spectra used to identify peptide sequences.","homepage":"https://www.ebi.ac.uk/pride","name":"PRIDE","uri_format":"https://www.ebi.ac.uk/pride/archive/usi?usi=mzspec:$1"},{"code":"","description":"Universal Spectrum Identifier through Peptide Atlas","homepage":"https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum","name":"Universal Spectrum Identifier through Peptide Atlas","uri_format":"https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:$1"}],"status":"active","uri_format":"http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1"},"n2t":{"description":"The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.","examples":["PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum","name":"Universal Spectrum Identifier through Peptide Atlas","pattern":"^mzspec:.+$","prefix":"mzspec","uri_format":"https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/ShowObservedSpectrum?usi=mzspec:$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"edeutsch@systemsbiology.org","name":"Eric Deutsch","orcid":"0000-0001-8732-0928"},"description":"The Universal Spectrum Identifier (USI) is multi-part key identifier for identifying mass spectra contained in public data repositories, primarily focused on proteomics. The USI provides a standardized mechanism for encoding a virtual path to any single mass spectrum generated by a mass spectrometer contained/deposited to public proteomics dataset repositories for enabling greater transparency of spectral evidence. With more than 1 billion USI identifications from over 3 billion spectra already available through ProteomeXchange repositories, Universal Spectrum Identifier encodes the dataset, the MS Run, the scan number and the proposed peptidoform and charge of the ions responsible for the spectrum. The USI identifier is comprised of five key components (and an optional sixth component) in defining an abstract path to a specified spectrum. The USI core components include: 1) the prefix ‘mzspec’ to make clear that the following string is a USI and to aid in automated mapping of a USI string to a URL, 2) the subsequent dataset submission or dataset collection identifier assigned by the primary repository archive, 3) the mass spectrometry run name (or root name of the raw vendor format file) such as an mzML file (with or without the file extension), 4) a type flag (such as ‘scan’, ‘index’ or ‘nativeId’ as defined in the current mzML specification) for indicating how to interpret the fifth component, 5) the index value (based on the flag type) within the specified MS run, and optionally 6) any relevant information for interpretation of the spectrum if available. ","homepage":"http://psidev.info/usi","keywords":["Lipidomics","Metabolomics","Proteomics","Mass spectrum","Data retrieval","Data analysis","Data identity and mapping"],"license":{"name":"Apache 2.0 License","url":"http://www.apache.org/licenses/LICENSE-2.0"},"name":"HUPO-PSI Universal Spectrum Identifier","prefix":"FAIRsharing.b549b8","publications":[{"doi":"10.1038/s41592-021-01184-6","pubmed":"34183830","title":"Universal Spectrum Identifier for mass spectra","url":"http://dx.doi.org/10.1038/s41592-021-01184-6","year":2021}],"repository":"https://github.com/HUPO-PSI/usi/tree/master/Specification","short_names":["USI"]},"biocontext":{"prefix":"MZSPEC","uri_format":"http://identifiers.org/mzspec/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"n2t":{"prefix":"n2t","name":"Name-to-Thing","description":"An ARK resolver as well as resolver built with common prefixes as in Identifiers.org","pattern":null,"uri_format":"https://n2t.net/$1:","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://n2t.net","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"chebi","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"n4e":{"prefix":"n4e","name":"NFDI4Earth Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"API","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"n4e"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The ontology and metadata schema for the NFDI4Earth Knowledge Hub. See serializations of this schema as an OWL ontology here:\n - [RDF/XML](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.xml)\n - [RDF/Turtle](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.ttl)\n - [RDF/JSON-LD](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.jsonld)\n - [RDF/N-Triples](https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology.owl.nt)\n","extras":{"version.iri":"https://nfdi4earth.pages.rwth-aachen.de/knowledgehub/nfdi4earth-kh-schema/ontology-v0.38.3.owl.xml"},"homepage":"https://nfdi4earth.de/ontology/","keywords":["ESS","earth sciences"],"name":"NFDI4EarthOntology","prefix":"n4e","tracker":"https://git.rwth-aachen.de/nfdi4earth/knowledgehub/nfdi4earth-kh-schema/-/issues","uri_format":"http://nfdi4earth.de/ontology/$1"}},"namerxn":{"prefix":"namerxn","name":"NameRXN","description":"The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nextmovesoftware.com/namerxn.html","repository":null,"contact":{"name":"Gregory Landrum","orcid":"0000-0001-6279-4481","email":"gregory.landrum@phys.chem.ethz.ch","github":"greglandrum"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"4.2.78","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemistry","reactions","text mining"],"domain":null,"references":["https://www.nextmovesoftware.com/products/HazELNutPoster.pdf","https://twitter.com/cthoyt/status/1443929184745758723"],"publications":[{"pubmed":null,"doi":"10.1038/s42256-020-00284-w","pmc":null,"title":"Mapping the space of chemical reactions using attention-based neural networks","year":2021},{"pubmed":"27028220","doi":"10.1021/acs.jmedchem.6b00153","pmc":null,"title":"Big Data from Pharmaceutical Patents: A Computational Analysis of Medicinal Chemists' Bread and Butter","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":true,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nando":{"prefix":"nando","name":null,"description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"NANDO","banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NANDO","bioportal":"NANDO","miriam":"nando","togoid":"Nando"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.","examples":["1200031"],"extras":{"miriam_id":"00001010","namespaceEmbeddedInLui":true},"homepage":"https://nanbyodata.jp/","name":"Nanbyo Disease Ontology","pattern":"^NANDO:[0-9]+$","prefix":"nando","status":"active","uri_format":"https://nanbyodata.jp/disease/NANDO:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"takatter@dbcls.rois.ac.jp","name":"Terue Takatsuki"},"description":"Creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.","homepage":"https://nanbyodata.jp","license":{"name":"CC-BY-4.0"},"name":"Nanbyo Disease Ontology","prefix":"NANDO","version":"2025-08-26"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NANDO/19/nando.owl"}],"description":"Creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.","homepage":"https://nanbyodata.jp","name":"Nanbyo Disease Ontology","prefix":"NANDO","version":"2025-08-26"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (NANDO). Designated intractable diseases and chronic specific pediatric diseases in Japan are the subject diseases. NANDO, and genes and phenotypes related intractable diseases are downloadable.","examples":["NANDO:1200461","NANDO:1200466","NANDO:1200851","NANDO:1200061","NANDO:1200315","NANDO:1200365","NANDO:1200922","NANDO:1200705","NANDO:2200074","NANDO:1200030"],"keywords":["Phenotype"],"name":"NANDO","pattern":"^NANDO[:_](?\\d{7})$","prefix":"Nando","uri_format":"http://nanbyodata.jp/ontology/NANDO_$1","xrefs":{"integbio":"nbdc02557"}},"integbio":null,"pathguide":null,"tib":null},"napdi":{"prefix":"napdi","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NAPDI","miriam":"napdi","n2t":"napdi"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"29743102","doi":"10.1186/s13326-018-0183-z","pmc":"PMC5944177","title":"Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse","year":2018}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).","examples":["28"],"extras":{"miriam_id":"00000620","namespaceEmbeddedInLui":false},"homepage":"https://repo.napdi.org/","name":"Natural Product-Drug Interaction Research Data Repository","pattern":"^[0-9]+$","prefix":"napdi","status":"active","uri_format":"https://repo.napdi.org/study/$1"},"n2t":{"description":"The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).","examples":["28"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://repo.napdi.org/","name":"Natural Product-Drug Interaction Research Data Repository","pattern":"^[0-9]+$","prefix":"napdi","uri_format":"https://repo.napdi.org/study/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NAPDI","uri_format":"http://identifiers.org/napdi/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"napp":{"prefix":"napp","name":"Nucleic Acids Phylogenetic Profiling","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NAPP","miriam":"napp","n2t":"napp","prefixcommons":"napp"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"21984475","doi":"10.1093/nar/gkr807","pmc":"PMC3245103","title":"NAPP: the Nucleic Acid Phylogenetic Profile Database","year":2011},{"pubmed":"19237465","doi":"10.1101/gr.089714.108","pmc":"PMC2694484","title":"Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.","examples":["351"],"extras":{"miriam_id":"00000247","namespaceEmbeddedInLui":false},"homepage":"http://rssf.i2bc.paris-saclay.fr/NAPP/index.php","name":"NAPP","pattern":"^\\d+$","prefix":"napp","status":"active","uri_format":"http://rssf.i2bc.paris-saclay.fr/NAPP/Niveau2.php?specie=$1"},"n2t":{"description":"NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.","examples":["351"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://napp.u-psud.fr/","name":"NAPP at CNRS","pattern":"^\\d+$","prefix":"napp","uri_format":"http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1"},"prefixcommons":{"description":"NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.","examples":["351"],"homepage":"http://napp.u-psud.fr/","keywords":["clustering","nucleotide"],"name":"NAPP: Nucleic Acids Phylogenetic Profiling","pattern":"^\\d+$","prefix":"napp","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/napp:$1"}],"uri_format":"http://napp.u-psud.fr/Niveau2.php?specie=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NAPP","uri_format":"http://identifiers.org/napp/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"narcis":{"prefix":"narcis","name":"National Academic Research and Collaborations Information System","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.narcis.nl","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NARCIS","integbio":"nbdc01862","miriam":"narcis","n2t":"narcis"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.","examples":["oai:cwi.nl:4725"],"extras":{"miriam_id":"00000240","namespaceEmbeddedInLui":false},"homepage":"http://www.narcis.nl/?Language=en","name":"NARCIS","pattern":"^oai\\:cwi\\.nl\\:\\d+$","prefix":"narcis","status":"active","uri_format":"http://www.narcis.nl/publication/RecordID/$1"},"n2t":{"description":"NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.","examples":["oai:cwi.nl:4725"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.narcis.nl/?Language=en","name":"NARCIS at The Hague","pattern":"^oai\\:cwi\\.nl\\:\\d+$","prefix":"narcis","uri_format":"http://www.narcis.nl/publication/RecordID/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NARCIS","uri_format":"http://identifiers.org/narcis/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.","homepage":"http://www.narcis.nl/?Language=en","keywords":["Bibliography/Documents","Repository"],"name":"NARCIS","prefix":"nbdc01862","status":"inactive","xrefs":{"fairsharing":"FAIRsharing.f63h4k"}},"pathguide":null,"tib":null},"nasaosdr.biospecimen":{"prefix":"nasaosdr.biospecimen","name":"NASA Open Science Data Repository Biospecimen","description":"Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^\\d+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/biospecimens/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"7943","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.experiment":{"prefix":"nasaosdr.experiment","name":"NASA Open Science Data Repository Experiment","description":"Identifiers for space-related data from experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^OS-\\d+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/experiments/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"OS-27","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.hardware":{"prefix":"nasaosdr.hardware","name":"NASA Open Science Data Repository Hardware","description":"Identifiers for hardware used in experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^\\d+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/hardware/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2011","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.mission":{"prefix":"nasaosdr.mission","name":"NASA Open Science Data Repository Mission","description":"Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^.+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/missions/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ARCBedrest","example_extras":["STS-46","Bion 11"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.payload":{"prefix":"nasaosdr.payload","name":"NASA Open Science Data Repository Payload","description":"Identifiers for payloads associated with experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^.+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/payloads/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"VEG-03D","example_extras":["NanoRacks-UF-Squids-1","PSE.02","HyperG2-SIMBA2"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.study":{"prefix":"nasaosdr.study","name":"NASA Open Science Data Repository Study","description":"Identifiers for space-related data from studies that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^OSD-\\d+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/studies/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"OSD-678","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"NASA OSDR is NASA's new integrated life sciences data archive which encompasses NASA GeneLAB (ngl), their old database for omics data. The studies from ngl are relabelled with new identifier formats, thus this is curated as a new prefix","contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasaosdr.subject":{"prefix":"nasaosdr.subject","name":"NASA Open Science Data Repository Subject","description":"Identifiers for subjects of experiments that investigate biological and health responses of terrestrial life to spaceflight","pattern":"^\\d+$","uri_format":"https://osdr.nasa.gov/bio/repo/data/subjects/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nasa.gov/osdr","repository":null,"contact":{"name":"Sylvain V Costes","orcid":"0000-0002-8542-2389","email":"sylvain.v.costes@nasa.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"58","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558178","doi":"10.1093/nar/gkae1116","pmc":null,"title":"NASA open science data repository: open science for life in space","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1298,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nasc":{"prefix":"nasc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NASC","miriam":"nasc","n2t":"nasc","prefixcommons":"nasc","re3data":"r3d100010906"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"14681484","doi":"10.1093/nar/gkh133","pmc":"PMC308867","title":"NASCArrays: a repository for microarray data generated by NASC's transcriptomics service","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.","examples":["N1899"],"extras":{"miriam_id":"00000304","namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.info/","name":"NASC code","pattern":"^(\\w+)?\\d+$","prefix":"nasc","status":"active","uri_format":"http://arabidopsis.info/StockInfo?NASC_id=$1"},"n2t":{"description":"The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.","examples":["N1899"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.info/","name":"NASC at University of Nottingham","pattern":"^(\\w+)?\\d+$","prefix":"nasc","uri_format":"http://arabidopsis.info/StockInfo?NASC_id=$1"},"prefixcommons":{"description":"The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.","examples":["57961"],"homepage":"http://arabidopsis.info","keywords":["genome"],"name":"Nottingham Arabidopsis Stock Centre Seeds Database","pattern":"^\\d+$","prefix":"nasc","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nasc:$1"}],"uri_format":"http://arabidopsis.info/StockInfo?NASC_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NASC","uri_format":"http://identifiers.org/nasc/$1"},"edam":null,"re3data":{"description":"The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to Europe researchers.","homepage":"https://arabidopsis.info/","name":"NASC","prefix":"r3d100010906","prefix_synonyms":["Nottingham Arabidopsis Stock Centre","The European Arabidopsis Stock Centre"],"xrefs":{"doi":"10.17616/R38P7T","omics":"28815"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nbn":{"prefix":"nbn","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NBN","miriam":"nbn","n2t":"nbn"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.","examples":["urn:nbn:fi:tkk-004781"],"extras":{"miriam_id":"00000381","namespaceEmbeddedInLui":false},"homepage":"http://nbn-resolving.org/resolve_urn.htm","name":"National Bibliography Number","pattern":"^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$","prefix":"nbn","status":"active","uri_format":"http://nbn-resolving.org/$1"},"n2t":{"description":"The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.","examples":["urn:nbn:fi:tkk-004781"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://nbn-resolving.org/resolve_urn.htm","name":"NBN through URN Resolver at German National Library","pattern":"^urn\\:nbn\\:[A-Za-z_0-9]+\\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$","prefix":"nbn","uri_format":"http://nbn-resolving.org/resolver?identifier=urn:nbn:$1&verb=redirect"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NBN","uri_format":"http://identifiers.org/nbn/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nbo":{"prefix":"nbo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/NBO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000564","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NBO","biocontext":"NBO","bioportal":"NBO","fairsharing":"FAIRsharing.pktgc6","obofoundry":"nbo","ols":"nbo","ontobee":"NBO","wikidata.entity":"Q81661716"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24177753","doi":"10.1007/s00335-013-9481-z","pmc":null,"title":"Analyzing gene expression data in mice with the Neuro Behavior Ontology","year":2013},{"pubmed":"23195121","doi":"10.1016/b978-0-12-388408-4.00004-6","pmc":null,"title":"The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes","year":2012},{"pubmed":"23195121","doi":"10.1016/b978-0-12-388408-4.00004-6","pmc":null,"title":"The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes","year":2012},{"pubmed":"24177753","doi":null,"pmc":null,"title":"Analyzing gene expression data in mice with the Neuro Behavior Ontology","year":null},{"pubmed":"23195121","doi":"10.1016/b978-0-12-388408-4.00004-6","pmc":null,"title":"The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes","year":2012},{"pubmed":"24177753","doi":null,"pmc":null,"title":"Analyzing gene expression data in mice with the Neuro Behavior Ontology","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["ecto","maxo","pcl","uberon","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/nbo.owl"}],"contact":{"email":"g.gkoutos@bham.ac.uk","github":"gkoutos","name":"George Gkoutos","orcid":"0000-0002-2061-091X"},"description":"An ontology of human and animal behaviours and behavioural phenotypes","domain":"biological systems","homepage":"https://github.com/obo-behavior/behavior-ontology/","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Neuro Behavior Ontology","preferred_prefix":"NBO","prefix":"nbo","publications":[{"pubmed":"24177753","title":"Analyzing gene expression data in mice with the Neuro Behavior Ontology"}],"repository":"https://github.com/obo-behavior/behavior-ontology","status":"active"},"bioportal":{"contact":{"email":"g.gkoutos@gmail.com","name":"George Gkoutos"},"description":"The Neurobehavior Ontology (NBO) consists of two main components, an ontology of behavioral processes and an ontology of behavioral phenotypes. The behavioral process branch of NBO contains a classification of behavior processes complementing and extending GO’s process ontology. The behavior phenotype branch of NBO consists of a classification of both normal and abnormal behavioral characteristics of organisms.","homepage":"https://github.com/obo-behavior/behavior-ontology/","name":"Neuro Behavior Ontology","prefix":"NBO","version":"2023-07-04"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/nbo.owl"}],"description":"An ontology of human and animal behaviours and behavioural phenotypes","extras":{"version.iri":"http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl"},"homepage":"https://github.com/obo-behavior/behavior-ontology/","name":"Neuro Behavior Ontology","prefix":"nbo","tracker":"https://github.com/obo-behavior/behavior-ontology/issues","version":"2023-07-04"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NBO/38/nbo.owl"}],"description":"An ontology of human and animal behaviours and behavioural phenotypes","homepage":"https://github.com/obo-behavior/behavior-ontology/","name":"Neuro Behavior Ontology","prefix":"NBO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Neuro Behavior Ontology","prefix":"NBO"},"cheminf":null,"fairsharing":{"description":"The Neurobehavior Ontology (NBO) consists of two main components, an ontology of behavioral processes and an ontology of behavioral phenotypes. The behavioral process branch of NBO contains a classification of behavior processes complementing and extending GO’s process ontology. The behavior phenotype branch of NBO consists of a classification of both normal and abnormal behavioral characteristics of organisms .","homepage":"https://github.com/obo-behavior/behavior-ontology/","keywords":["Social and Behavioural Science","Systemic Neuroscience","behavior","phenotype"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Neuro Behavior Ontology","prefix":"FAIRsharing.pktgc6","publications":[{"doi":"10.1016/b978-0-12-388408-4.00004-6","pubmed":"23195121","title":"The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes","url":"http://doi.org/10.1016/B978-0-12-388408-4.00004-6","year":2012}],"repository":"https://github.com/obo-behavior/behavior-ontology/issues","short_names":["NBO"]},"biocontext":{"prefix":"NBO","uri_format":"http://purl.obolibrary.org/obo/NBO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nbrc":{"prefix":"nbrc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NBRC","miriam":"nbrc","n2t":"nbrc","ncbi":"NBRC","prefixcommons":"nbrc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.","examples":["00001234"],"extras":{"miriam_id":"00000179","namespaceEmbeddedInLui":false},"homepage":"http://www.nbrc.nite.go.jp/e/index.html","name":"NITE Biological Research Center Catalogue","pattern":"^\\d+$","prefix":"nbrc","status":"active","uri_format":"http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"},"n2t":{"description":"NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.","examples":["00001234"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.nbrc.nite.go.jp/e/index.html","name":"NBRC Catalogue at National Institute of Technology Evaluation","pattern":"^\\d+$","prefix":"nbrc","uri_format":"http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"},"prefixcommons":{"description":"To provide attractive biological resources with useful information attached, the NITE Biological Resource Center (NBRC) actively collects potentially useful biological resources (microorganisms and cloned genes) and distributes them to promote basic researches as well as industrial applications.","examples":["00001234"],"homepage":"http://www.nbrc.nite.go.jp/e/index.html","keywords":["microbial","taxonomy"],"name":"NITE Biological Research Center Catalogue","pattern":"^\\d+$","prefix":"nbrc","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nbrc:$1"}],"uri_format":"http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["3189"],"homepage":"http://www.nbrc.nite.go.jp/e/catalog-e.html","name":"NITE Biological Resource Center","prefix":"NBRC"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NBRC","uri_format":"http://identifiers.org/nbrc/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncats.bioplanet":{"prefix":"ncats.bioplanet","name":"National Center for Advancing Translation Sciences BioPlanet","description":"The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.","pattern":"^\\d+$","uri_format":"https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://tripod.nih.gov/bioplanet/","repository":null,"contact":{"name":"Ruili Huang","orcid":"0000-0001-8886-8311","email":"ruili.huang@nih.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"ncats.bioplanet"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31133849","doi":"10.3389/fphar.2019.00445","pmc":"PMC6524730","title":"The NCATS BioPlanet - An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Sierra Moxon","orcid":"0000-0002-8719-7760","email":"smoxon@lbl.gov","github":"sierra-moxon"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":445,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"ncats.bioplanet","uri_format":"https://tripod.nih.gov/bioplanet/detail.jsp?pid=$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncats.drug":{"prefix":"ncats.drug","name":"NCATS Drugs","description":"The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances","pattern":null,"uri_format":"https://drugs.ncats.io/drug/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://drugs.ncats.io/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"44259","example_extras":["1IJV77EI07"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"ncats.drug"},"synonyms":["inxight","inxight-drugs"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"},{"name":"Vlado Dancik","orcid":"0000-0002-5970-6660","email":null,"github":"vdancik"},{"name":"Sierra Moxon","orcid":"0000-0002-8719-7760","email":"smoxon@lbl.gov","github":"sierra-moxon"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"ncats.drug","uri_format":"https://drugs.ncats.io/drug/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbi.assembly":{"prefix":"ncbi.assembly","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCBIAssembly","miriam":"assembly","re3data":"r3d100012688"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.","examples":["GCF_000005845.2"],"extras":{"miriam_id":"00000884","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/","name":"Assembly","pattern":"^[a-zA-Z0-9_\\.]+$","prefix":"assembly","status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/datasets/genome/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCBIAssembly","uri_format":"http://www.ncbi.nlm.nih.gov/assembly/$1"},"edam":null,"re3data":{"description":"<<>>!!!>>>\n\n\nA database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.","homepage":"https://www.ncbi.nlm.nih.gov/assembly","name":"NCBI Assembly","prefix":"r3d100012688","xrefs":{"doi":"10.17616/R31NJMA8","omics":"10736"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbi.gc":{"prefix":"ncbi.gc","name":"NCBI Genetic Code","description":"Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.","pattern":"^\\d+$","uri_format":"https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes","repository":null,"contact":{"name":"Andrzej Elzanowski","orcid":null,"email":"elzanowski@biol.uni.wroc.pl","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"11","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.owl","download_obo":"https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.obo","download_json":"https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["gc","gc_id"],"keywords":["genetic code","genome"],"domain":"genetic code","references":["https://github.com/obophenotype/ncbitaxon/issues/47","https://www.ncbi.nlm.nih.gov/home/about/policies"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"see comment here: https://github.com/obophenotype/ncbitaxon/issues/47","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.ncbi.nlm.nih.gov/corehtml/logo256.gif","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbi.genome":{"prefix":"ncbi.genome","name":"NCBI Genome","description":"This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.","pattern":"^\\d+$","uri_format":"https://www.ncbi.nlm.nih.gov/genome/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/genome","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"51","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCBIGenome","edam":"2787","re3data":"r3d100010785"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCBIGenome","uri_format":"http://www.ncbi.nlm.nih.gov/genome/$1"},"edam":{"description":"A unique identifier of a whole genome assigned by the NCBI.","name":"NCBI genome","prefix":"2787"},"re3data":{"description":"The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.\n\n\nThe Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.","homepage":"https://www.ncbi.nlm.nih.gov/datasets/genome/","license":{"name":"other"},"name":"NCBI Genome","prefix":"r3d100010785","xrefs":{"doi":"10.17616/R3R89S","nif":"0000-02802"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbi.resource":{"prefix":"ncbi.resource","name":"NCBI Registry","description":"A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources","pattern":null,"uri_format":"https://bioregistry.io/metaregistry/ncbi/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ECOCYC","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbibook":{"prefix":"ncbibook","name":"NCBI Bookshelf","description":"The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover.","pattern":"^NBK\\d+$","uri_format":"https://www.ncbi.nlm.nih.gov/books/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/books","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NBK331","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbidrs":{"prefix":"ncbidrs","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"ncbidrs"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. ","examples":["72ff6ff882ec447f12df018e6183de59"],"extras":{"miriam_id":"00001034","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/","name":"NCBI Data Repository Service","pattern":"^[0-9a-fA-F]{32}$","prefix":"ncbidrs","status":"active","uri_format":"https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbigene":{"prefix":"ncbigene","name":"NCBI Gene","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"marrvel","name":"Model organism Aggregated Resources for Rare Variant ExpLoration","description":"Helps browse potential orthologs in model organisms for a given gene","homepage":"http://marrvel.org","uri_format":"http://marrvel.org/model/gene/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"scholia","name":"Scholia","description":"Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.","homepage":"https://scholia.toolforge.org/","uri_format":"https://scholia.toolforge.org/ncbi-gene/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Terence D. Murphy","orcid":"0000-0001-9311-9745","email":"murphyte@ncbi.nlm.nih.gov","github":"murphyte"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02meqm098","wikidata":null,"name":"National Center for Biotechnology Information","partnered":false}],"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCBIGene","biolink":"NCBIGene","edam":"1027","go":"NCBIGene","hl7":"2.16.840.1.113883.6.340","integbio":"nbdc00073","miriam":"ncbigene","n2t":"ncbigene","ncbi":"GeneID","prefixcommons":"ncbigene","re3data":"r3d100010650","togoid":"Ncbigene","uniprot":"DB-0118","wikidata":"P351"},"synonyms":["EGID","EntrezGene","GeneID","NCBIGene","NCBI_GeneID","entrez","entrez gene/locuslink","nihgeneid"],"keywords":null,"domain":"gene","references":["https://github.com/biopragmatics/bioregistry/issues/983"],"publications":[{"pubmed":"21115458","doi":"10.1093/nar/gkq1237","pmc":"PMC3013746","title":"Entrez Gene: gene-centered information at NCBI","year":2010},{"pubmed":"15608257","doi":"10.1093/nar/gki031","pmc":"PMC539985","title":"Entrez Gene: gene-centered information at NCBI","year":2005},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null},{"pubmed":"21115458","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608257","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25355515","doi":"10.1093/nar/gku1055","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Rhiannon Cameron","orcid":"0000-0002-9578-0788","email":"rcameron@sfu.com","github":"cmrn-rhi"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"NCBIGene","mastodon":null,"github_request_issue":null,"logo":"https://www.ncbi.nlm.nih.gov/corehtml/logo256.gif","miriam":{"description":"Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.","examples":["100010"],"extras":{"miriam_id":"00000069","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/gene","name":"NCBI Gene","pattern":"^\\d+$","prefix":"ncbigene","providers":[{"code":"","description":"Bio2RDF","homepage":"http://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ncbigene:$1"}],"status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1"},"n2t":{"description":"Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.","examples":["100010"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/gene","name":"Entrez Gene (NCBI)","pattern":"^\\d+$","prefix":"ncbigene","uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1"},"prefixcommons":{"description":"NCBI Gene provides information for genes from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.","examples":["1"],"homepage":"http://www.ncbi.nlm.nih.gov/gene","keywords":["genome","gene","DNA"],"name":"NCBI Gene","pattern":"^\\d+$","prefix":"ncbigene","prefix_synonyms":["entrez.gene","entrezgene/locuslink","geneid"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ncbigene:$1"}],"publications":[{"pubmed":"15608257"}],"uri_format":"http://www.ncbi.nlm.nih.gov/gene/$1"},"wikidata":{"description":"identifier for a gene per the NCBI Entrez database","examples":["1017","1207170"],"name":"Entrez Gene ID","pattern":"^[1-9]\\d{0,8}$","prefix":"P351","uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1","uri_format_rdf":"http://purl.uniprot.org/geneid/$1","xrefs":{"miriam":"ncbigene"}},"wikidata_entity":null,"go":{"homepage":"http://www.ncbi.nlm.nih.gov/","name":"NCBI Gene","prefix":"NCBIGene","prefix_synonyms":["GeneID","LocusID","NCBI_Gene"],"uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["3054987"],"homepage":"https://www.ncbi.nlm.nih.gov/gene","name":"Entrez Gene Database (replaces NCBI Locus Link)","prefix":"GeneID"},"uniprot":{"homepage":"https://www.ncbi.nlm.nih.gov/gene","keywords":["Genome annotation databases"],"name":"Database of genes from NCBI RefSeq genomes","prefix":"DB-0118","publications":[{"doi":"10.1093/nar/gku1055","pubmed":"25355515"}],"short_names":["GeneID"],"uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1"},"biolink":{"prefix":"NCBIGene","uri_format":"http://identifiers.org/ncbigene/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCBIGene","uri_format":"http://www.ncbi.nlm.nih.gov/gene/$1"},"edam":{"description":"An NCBI unique identifier of a gene.","name":"Gene ID (NCBI)","prefix":"1027"},"re3data":{"description":"The Gene database provides detailed information for known and predicted genes defined by nucleotide sequence or map position. Gene supplies gene-specific connections in the nexus of map, sequence, expression, structure, function, citation, and homology data. Unique identifiers are assigned to genes with defining sequences, genes with known map positions, and genes inferred from phenotypic information. These gene identifiers are used throughout NCBI's databases and tracked through updates of annotation. Gene includes genomes represented by NCBI Reference Sequences (or RefSeqs) and is integrated for indexing and query and retrieval from NCBI's Entrez and E-Utilities systems.","homepage":"https://www.ncbi.nlm.nih.gov/gene?db=gene","name":"NCBI Gene","prefix":"r3d100010650","prefix_synonyms":["Entrez Gene","Gene"],"xrefs":{"doi":"10.17616/R3603S","nif":"0000-02801","omics":"01651"}},"hl7":{"description":"Because not all genes have HGNC names and codes, NCBI has created gene IDs that cover the genes that are not registered by HGNC. When applicable, this variable identifies the gene on which the variant is located. The gene identifier is also carried in the transcript reference sequence database, and is part of a full HGVS expression.","extras":{"organization":"Lister Hill National Center for Biomedical Communications"},"homepage":"https://lhncbc.nlm.nih.gov/","name":"NCBI Gene Code","preferred_prefix":"geneCodeNCBI","prefix":"2.16.840.1.113883.6.340","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"The gene database provides information on gene sequence, structure, location, and function for annotated genes from the NCBI database. Users can search by accession ID or keyword, compare and identify sequences using BLAST, or submit references into function (RIFs) based on experimental results. Bulk download and an update mailing list are available.","examples":["63962027","1046","63961921","102606930","100472895","407025","84148","88","31157","100463227"],"keywords":["Gene"],"name":"NCBI Gene","pattern":"^(?\\d+)$","prefix":"Ncbigene","uri_format":"http://identifiers.org/ncbigene/$1","xrefs":{"integbio":"nbdc00073"}},"integbio":{"description":"The gene database provides information on gene sequence, structure, location, and function for annotated genes from the NCBI database. Users can search by accession ID or keyword, compare and identify sequences using BLAST, or submit references into function (RIFs) based on experimental results. Bulk download and an update mailing list are available.","homepage":"http://www.ncbi.nlm.nih.gov/gene","keywords":["Genome/Gene","Sequence","Repository"],"name":"NCBI Gene","prefix":"nbdc00073","publications":[{"pubmed":"21115458"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000449"}},"pathguide":null,"tib":null},"ncbigi":{"prefix":"ncbigi","name":"GenInfo Identifier","description":"A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/genbank/sequenceids/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02meqm098","wikidata":null,"name":"National Center for Biotechnology Information","partnered":false}],"example":"568815597","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCBIGI","edam":"2314","go":"NCBI_gi","ncbi":"GI"},"synonyms":["NCBI_gi","ncbi.gi"],"keywords":null,"domain":null,"references":["https://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html","https://www.ncbi.nlm.nih.gov/Class/MLACourse/Modules/Format/exercises/qa_accession_vs_gi.html"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":"genbank","preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.ncbi.nlm.nih.gov/","name":"NCBI databases","prefix":"NCBI_gi","uri_format":"http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["1234567890"],"name":"GenInfo identifier, used as a unique sequence identifier for nucleotide and proteins","prefix":"GI"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCBIGI","uri_format":"http://identifiers.org/ncbigi/$1"},"edam":{"description":"A series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the sequence record.","name":"GI number","prefix":"2314"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbiortholog":{"prefix":"ncbiortholog","name":"NCBI Orthologs","description":"Database of one-to-one ortholog information provided by the NCBI as a subset of their Gene resource. Used for users to access ortholog information for over 1000 species of vertebrates and arthropods.","pattern":"^\\d+$","uri_format":"https://www.ncbi.nlm.nih.gov/gene/$1/ortholog","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/gene/","repository":null,"contact":{"name":"Terence D. Murphy","orcid":"0000-0001-9311-9745","email":"murphyte@ncbi.nlm.nih.gov","github":"murphyte"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2","example_extras":null,"example_decoys":null,"license":"US gov't public domain","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"We do not currently have the source code for our ortholog resource available publicly, although we are looking at how to split it off and make it available in the next year. We are now in the process of adding this tag to the INSDC list for use in annotations, so I'd like to mirror that tag in bioregistry.","contributor":{"name":"Terence D. Murphy","orcid":"0000-0001-9311-9745","email":"murphyte@ncbi.nlm.nih.gov","github":"murphyte"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1181,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncbiprotein":{"prefix":"ncbiprotein","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02meqm098","wikidata":null,"name":"National Center for Biotechnology Information","partnered":false}],"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCBIProtein","go":"NCBI_NP","integbio":"nbdc00636","miriam":"ncbiprotein","n2t":"ncbiprotein","prefixcommons":"ncbi.protein","re3data":"r3d100010776"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"NCBIProtein","mastodon":null,"github_request_issue":null,"logo":"https://www.ncbi.nlm.nih.gov/corehtml/logo256.gif","miriam":{"description":"The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.","examples":["CAA71118.1"],"extras":{"miriam_id":"00000344","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/protein","name":"NCBI Protein","pattern":"^\\w+_?\\d+(.\\d+)?$","prefix":"ncbiprotein","status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/protein/$1"},"n2t":{"description":"The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.","examples":["CAA71118.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/protein","name":"NCBI Protein at NCBI","pattern":"^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$","prefix":"ncbiprotein","uri_format":"https://www.ncbi.nlm.nih.gov/protein/$1"},"prefixcommons":{"description":"The Entrez Protein search and retrieval system contains protein entries that have been compiled from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq.","examples":["CAA71118.1"],"homepage":"http://www.ncbi.nlm.nih.gov/protein","keywords":["protein"],"name":"NCBI Protein","pattern":"^\\w+\\d+(\\.\\d+)?$","prefix":"ncbi.protein","prefix_synonyms":["protein","ncbi-proteinid"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ncbi.protein:$1"}],"uri_format":"http://www.ncbi.nlm.nih.gov/protein/$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.ncbi.nlm.nih.gov/protein","name":"NCBI Protein","prefix":"NCBI_NP"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCBIProtein","uri_format":"http://www.ncbi.nlm.nih.gov/protein/$1"},"edam":null,"re3data":{"description":"The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.","homepage":"https://www.ncbi.nlm.nih.gov/protein","license":{"name":"Copyrights"},"name":"NCBI Protein","prefix":"r3d100010776","xrefs":{"doi":"10.17616/R3X039","nif":"0000-03178"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"NCBI Protein is a collection of amino acid sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. A record includes the amino acid sequence, organism information, literature, links to other NCBI databases such as BioProject, BioSample, etc.","homepage":"https://www.ncbi.nlm.nih.gov/protein","keywords":["Protein","Sequence","Repository"],"name":"NCBI Protein","prefix":"nbdc00636","status":"active","xrefs":{"fairsharing":"FAIRsharing.rtndct"}},"pathguide":null,"tib":null},"ncbitaxon":{"prefix":"ncbitaxon","name":"NCBI Taxonomy","description":null,"pattern":"^(\\d+)|([a-zA-Z_]+)$","uri_format":"http://purl.obolibrary.org/obo/NCBITaxon_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"scholia","name":"Scholia","description":"Scholia is a service that creates visual scholarly profiles for topic, people, organizations, species, chemicals, etc using bibliographic and other information in Wikidata.","homepage":"https://scholia.toolforge.org/","uri_format":"https://scholia.toolforge.org/ncbi-taxon/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"bioportal.purl","name":"BioPortal","description":"BioPortal assigns their own PURLs to entities in NCBI taxonomy database.","homepage":"https://purl.bioontology.org/ontology/NCBITAXON","uri_format":"http://purl.bioontology.org/ontology/NCBITAXON/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Conrad L Schoch","orcid":"0000-0003-1839-5322","email":"schoch2@ncbi.nlm.nih.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"02meqm098","wikidata":null,"name":"National Center for Biotechnology Information","partnered":false}],"example":"2170610","example_extras":["subclass"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/ncbitaxon.obo.gz","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NCBITAXON","agroportal":"TAX","bartoc":"509","biocontext":"TAXONOMY","bioportal":"NCBITAXON","cellosaurus":"NCBI_TaxID","edam":"1179","fairsharing":"FAIRsharing.fj07xj","go":"NCBITaxon","hl7":"2.16.840.1.113883.6.205","lov":"tax","miriam":"taxonomy","n2t":"taxonomy","ncbi":"taxon","obofoundry":"ncbitaxon","ols":"ncbitaxon","ontobee":"NCBITaxon","prefixcommons":"taxonomy","re3data":"r3d100010415","togoid":"Taxonomy","wikidata":"P685","wikidata.entity":"Q81661717"},"synonyms":["NCBI Taxonomy","NCBITaxon","NCBITaxonomyID","NCBI_Taxon_ID","NCBI_taxid","TAX","TaxonomyID","ncbiTaxUID","taxid","taxon","taxonomy","uniprot.taxonomy"],"keywords":null,"domain":"taxonomy","references":null,"publications":[{"pubmed":"32761142","doi":"10.1093/database/baaa062","pmc":"PMC7408187","title":"NCBI Taxonomy: a comprehensive update on curation, resources and tools","year":2020},{"pubmed":"29140468","doi":"10.1093/nar/gkx1094","pmc":"PMC5753231","title":"GenBank","year":2018},{"pubmed":"22139910","doi":"10.1093/nar/gkr1178","pmc":"PMC3245000","title":"The NCBI Taxonomy database","year":2011},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023},{"pubmed":null,"doi":"10.5281/zenodo.8065005","pmc":null,"title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","year":2023}],"appears_in":null,"depends_on":null,"namespace_in_lui":false,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.","examples":["9606"],"extras":{"miriam_id":"00000006","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/Taxonomy/","name":"Taxonomy","pattern":"^\\d+$","prefix":"taxonomy","providers":[{"code":"ebi","description":"European Nucleotide Archive (ENA)","homepage":"https://www.ebi.ac.uk/ena/","name":"European Nucleotide Archive (ENA)","uri_format":"https://www.ebi.ac.uk/ena/data/view/Taxon:$1"},{"code":"","description":"Bio2RDF","homepage":"https://bio2rdf.org/","name":"Bio2RDF","uri_format":"https://bio2rdf.org/taxonomy:$1"},{"code":"","description":"Taxonomy through UniProt PURL","homepage":"https://www.uniprot.org/taxonomy/","name":"Taxonomy through UniProt PURL","uri_format":"https://purl.uniprot.org/taxonomy/$1"}],"status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1"},"n2t":{"description":"The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.","examples":["9606"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/Taxonomy/","name":"NCBI Taxonomy","pattern":"^\\d+$","prefix":"taxonomy","uri_format":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1"},"prefixcommons":{"description":"The NCBI taxonomy database contains the names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence.","examples":["9606"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/NCBITaxon#$1","http://purl.org/obo/owl/TAXON#$1","http://bioportal.bioontology.org/ontologies/1132?p=terms&conceptid=obo:NCBITaxon_#$1"]},"homepage":"http://www.ncbi.nlm.nih.gov/taxonomy","keywords":["DNA","protein","structure","classification"],"license":{"name":"http://www.nlm.nih.gov/copyright.html","url":"http://www.nlm.nih.gov/copyright.html"},"name":"NCBI Taxonomy","pattern":"^\\d+$","prefix":"taxonomy","prefix_synonyms":["taxid","taxon","ncbitaxon","ncbitaxonomy","newt","taxman","ncbi_taxid","ncbi_taxon_id"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/taxonomy:$1"}],"uri_format":"http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$1","xrefs":{"bioportal":"1132"}},"wikidata":{"description":"identifier for a taxon in the Taxonomy Database by the National Center for Biotechnology Information","examples":["9606","9986"],"homepage":"http://www.ncbi.nlm.nih.gov/taxonomy","name":"NCBI taxonomy ID","pattern":"^[1-9][0-9]{0,6}$","prefix":"P685","uri_format":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1","uri_format_rdf":"http://purl.obolibrary.org/obo/NCBITaxon_$1"},"wikidata_entity":null,"go":{"homepage":"http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/","name":"NCBI Taxonomy","prefix":"NCBITaxon","prefix_synonyms":["taxon","ncbi_taxid"],"uri_format":"http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$1"},"obofoundry":{"appears_in":["agro","chiro","cl","clo","ecto","envo","foodon","gallont","genepio","go","hso","mco","ons","pcl","pco","uberon","vbo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncbitaxon.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/ncbitaxon.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/ncbitaxon.json"}],"contact":{"email":"frederic.bastian@unil.ch","github":"fbastian","name":"Frederic Bastian","orcid":"0000-0002-9415-5104"},"description":"An ontology representation of the NCBI organismal taxonomy","domain":"organisms","homepage":"https://github.com/obophenotype/ncbitaxon","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"NCBI organismal classification","preferred_prefix":"NCBITaxon","prefix":"ncbitaxon","repository":"https://github.com/obophenotype/ncbitaxon","status":"active"},"bioportal":{"contact":{"email":"info@ncbi.nlm.nih.gov","name":"NCBI information"},"description":"The NCBI Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases.","homepage":"http://www.ncbi.nlm.nih.gov/taxonomy","name":"National Center for Biotechnology Information (NCBI) Organismal Classification","prefix":"NCBITAXON","version":"2025_04_10"},"ecoportal":null,"agroportal":{"contact":{"email":"mohamed-el-amine.boukerfa@inrae.fr","name":"LOV_migration"},"description":"EUdaphobase Taxonomy Ontology for the European Soil-Biology Data Warehouse for Soil Protection","extras":{"example_uri":"https://w3id.org/EUTaxO#Animalia"},"license":{"name":"https://opensource.org/licenses/MIT"},"name":"EUTaxO - EUdaphobase Taxonomy Ontology","prefix":"TAX","version":"v2.0.0 - Changes:\nThis major version adapts the ontology to better comply with the FAIR principles.\n- Changed URI from \"https://www.eudaphobase.eu/ontologies/taxonomy\" to \"https://w3id.org/EUTaxO\"\n- Complete ontology metadata\n- Complete labels and comments for all terms\n- Remove support to parse output excel file\n- Remove all spaces from URIs"},"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncbitaxon.owl"}],"description":"An ontology representation of the NCBI organismal taxonomy","extras":{"version.iri":"http://purl.obolibrary.org/obo/ncbitaxon/2025-12-03/ncbitaxon.owl"},"homepage":"https://github.com/obophenotype/ncbitaxon","name":"NCBI organismal classification","prefix":"ncbitaxon","tracker":"https://github.com/obophenotype/ncbitaxon/issues","uri_format":"http://purl.obolibrary.org/obo/NCBITaxon_$1","version":"2025-12-03"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NCBITAXON/16/ncbitaxon.owl"}],"description":"An ontology representation of the NCBI organismal taxonomy","homepage":"https://github.com/obophenotype/ncbitaxon","name":"NCBI organismal classification","prefix":"NCBITAXON"},"ncbi":{"examples":["4932"],"homepage":"https://www.ncbi.nlm.nih.gov/taxonomy","name":"NCBI's taxonomic identifier","prefix":"taxon"},"uniprot":null,"biolink":null,"cellosaurus":{"description":"Taxonomy","homepage":"https://www.ncbi.nlm.nih.gov/taxonomy","name":"NCBI taxonomy database","prefix":"NCBI_TaxID","uri_format":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1&lvl=3"},"ontobee":{"keywords":["obo","ontology"],"name":"NCBI organismal classification","prefix":"NCBITaxon"},"cheminf":null,"fairsharing":{"contact":{"email":"frederic.bastian@unil.ch","name":"Frederic Bastian","orcid":"0000-0002-9415-5104"},"description":"The National Center for Biotechnology Information Organismal Classification ontology (NCBITaxon) is an automatic semantic translation of the NCBI taxonomy database into obo/owl. ","homepage":"https://github.com/obophenotype/ncbitaxon","keywords":["Life Science","Knowledge and Information Systems","Taxonomy","Phylogenetics","Evolutionary Biology","Omics","Proteomics","Genomics","Taxonomic classification"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"NCBI Organismal Classification","prefix":"FAIRsharing.fj07xj","publications":[{"doi":"10.5281/zenodo.8065005","title":"obophenotype/ncbitaxon: 2023-06-20 Release (v2023-06-20)","url":"https://doi.org/10.5281/zenodo.15040265","year":2023}],"repository":"https://github.com/obophenotype/ncbitaxon/issues","short_names":["NCBITaxon"]},"biocontext":{"prefix":"TAXONOMY","uri_format":"http://identifiers.org/taxonomy/$1"},"edam":{"description":"A stable unique identifier for each taxon (for a species, a family, an order, or any other group in the NCBI taxonomy database.","name":"NCBI taxonomy","prefix":"1179"},"re3data":{"description":"The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. The EMBL and DDBJ databases, as well as GenBank, now use the NCBI Taxonomy as the standard classification for nucleotide sequences. Taxonomy Contains the names and phylogenetic lineages of more than 160,000 organisms that have molecular data in the NCBI databases. New taxa are added to the Taxonomy database as data are deposited for them. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database.","homepage":"https://www.ncbi.nlm.nih.gov/taxonomy","name":"NCBI Taxonomy","prefix":"r3d100010415","prefix_synonyms":["Entrez Taxonomy"],"xrefs":{"doi":"10.17616/R3531R","nif":"0000-03179"}},"hl7":{"description":"NCBI Taxonomy. National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, 2001. http://www.ncbi.nlm.nih.gov/Taxonomy/","name":"Taxonomy from NCBI","preferred_prefix":"NCBI","prefix":"2.16.840.1.113883.6.205","status":"active"},"bartoc":{"description":"The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database. As of April 2003, there were 176,890 total taxa represented.\n\nThere are two main tools for viewing the information in the Taxonomy database: the Taxonomy Browser, and Taxonomy Entrez. Both systems allow searching of the Taxonomy database for names, and both link to the relevant sequence data. However, the Taxonomy Browser provides a hierarchical view of the classification (the best display for most casual users interested in exploring our classification), whereas Entrez Taxonomy provides a uniform indexing, search, and retrieval engine with a common mechanism for linking between the Taxonomy and other relevant Entrez databases.\n\nOrganismal taxonomy is a powerful organizing principle in the study of biological systems. Inheritance, homology by common descent, and the conservation of sequence and structure in the determination of function are all central ideas in biology that are directly related to the evolutionary history of any group of organisms. Because of this, taxonomy plays an important cross-linking role in many of the NCBI tools and databases.\n\nThe NCBITaxon ontology is an automatic translation of the NCBI taxonomy (a taxonomic classification of living organisms and associated artifacts) database into obo/owl.","homepage":"http://www.ncbi.nlm.nih.gov/taxonomy","name":"National Center for Biotechnology Information Taxonomy","prefix":"509","uri_format":"https://data.bioontology.org/ontologies/NCBITAXON/$1"},"rrid":null,"lov":{"description":"EUdaphobase Taxonomy Ontology for the European Soil-Biology Data Warehouse for Soil Protection","homepage":"https://w3id.org/EUTaxO","keywords":["Biology"],"name":"EUTaxO - EUdaphobase Taxonomy Ontology","prefix":"tax","uri_format":"https://w3id.org/EUTaxO#$1"},"zazuko":null,"togoid":{"description":"Taxonomy is a database of systematic classifications of organisms repesented in public sequencing databases. The database contains phylogenetic relatonships and nomenclature for an estimated 10% of all living species. Tools include a browser, genetic codes, and a common evolutionary tree. Taxonomic classificatinos can be downloaded via FTP.","examples":["1171376","484906","1214242","1124991","1037911","1266844","243277","696747","263820","713604"],"keywords":["Organism"],"name":"Taxonomy","pattern":"^(?\\d+)$","prefix":"Taxonomy","uri_format":"http://identifiers.org/taxonomy/$1","xrefs":{"integbio":"nbdc00700"}},"integbio":null,"pathguide":null,"tib":null},"nci.drug":{"prefix":"nci.drug","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P11623"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier of an entry in the NCI Drug Dictionary","examples":["beta-carotene","edatrexate","hydroxychloroquine","l-carnitine-l-tartrate"],"homepage":"https://www.cancer.gov/publications/dictionaries/cancer-drug","name":"NCI Drug Dictionary ID","prefix":"P11623","uri_format":"https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncim":{"prefix":"ncim","name":"NCI Metathesaurus","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"040gcmg81","wikidata":null,"name":"National Cancer Institute","partnered":false}],"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NCIM","miriam":"ncim","n2t":"ncim"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.","examples":["C0026339"],"extras":{"miriam_id":"00000353","namespaceEmbeddedInLui":false},"homepage":"http://ncim.nci.nih.gov/","name":"NCIm","pattern":"^C\\d+$","prefix":"ncim","status":"active","uri_format":"http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"},"n2t":{"description":"NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.","examples":["C0026339"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://ncim.nci.nih.gov/","name":"NCIm at National Cancer Institue","pattern":"^C\\d+$","prefix":"ncim","uri_format":"http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NCIM","uri_format":"http://identifiers.org/ncim/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ncit":{"prefix":"ncit","name":"NCI Thesaurus","description":null,"pattern":"^[CRPA]\\d+$","uri_format":"http://purl.obolibrary.org/obo/NCIT_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"evs","name":"Legacy NCBI OWL","description":"Links to a no-longer existing OWL file","homepage":"https://ncit.nci.nih.gov/ncitbrowser/","uri_format":"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":"040gcmg81","wikidata":null,"name":"National Cancer Institute","partnered":false}],"example":"C138986","example_extras":["R123","A14","P320"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/ncit.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NCIT","biocontext":"NCIT","bioportal":"NCIT","cellosaurus":"NCIt","fairsharing":"FAIRsharing.4cvwxa","hl7":"2.16.840.1.113883.6.206","integbio":"nbdc02651","miriam":"ncit","n2t":"ncit","obofoundry":"ncit","ols":"ncit","ontobee":"NCIT","prefixcommons":"ncit","tib":"ncit","wikidata":"P1748","wikidata.entity":"Q113012671"},"synonyms":["NCI","NCI2004_11_17","NCIT","NCIT_Thesaurus","NCIThesaurus","NCITm","NCITt","NCI_Thesaurus","NCIt","NCit","ncithesaurus"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"19789731","doi":"10.3233/ao-2008-0051","pmc":"PMC2753293","title":"Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages","year":2008},{"pubmed":"15360769","doi":"10.3233/978-1-60750-949-3-33","pmc":null,"title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","year":2004},{"pubmed":"15360769","doi":"10.3233/978-1-60750-949-3-33","pmc":null,"title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","year":2004},{"pubmed":"19789731","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360769","doi":"10.3233/978-1-60750-949-3-33","pmc":null,"title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","year":2004},{"pubmed":"19789731","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360769","doi":"10.3233/978-1-60750-949-3-33","pmc":null,"title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","year":2004},{"pubmed":"19789731","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15360769","doi":"10.3233/978-1-60750-949-3-33","pmc":null,"title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","year":2004},{"pubmed":"19789731","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":false,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://evsexplore.semantics.cancer.gov/evsexplore/assets/images/NCItTile.png","miriam":{"description":"NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.","examples":["C80519"],"extras":{"miriam_id":"00000139","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/ncit","name":"NCIt","pattern":"^C\\d+$","prefix":"ncit","providers":[{"code":"","description":"NCIt at National Cancer Institute","homepage":"http://ncit.nci.nih.gov/","name":"NCIt at National Cancer Institute","uri_format":"http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1"}],"status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/ncit/terms?short_form=NCIT_$1"},"n2t":{"description":"NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.","examples":["C80519"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://ncit.nci.nih.gov/","name":"NCIt at National Cancer Institute","pattern":"^C\\d+$","prefix":"ncit","uri_format":"http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1"},"prefixcommons":{"description":"A vocabulary for clinical care, translational and basic research, and public information and administrative activities.","examples":["C80519"],"homepage":"https://cabig.nci.nih.gov/community/concepts/EVS/","keywords":["thesaurus"],"name":"NCI Thesaurus","pattern":"^C\\d+$","prefix":"ncit","prefix_synonyms":["ncithesaurus","nci","nci2009_04d","nci_thesaurus_code"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ncit:$1"}],"publications":[{"pubmed":"19789731"}],"uri_format":"http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$1","uri_format_rdf":"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#$1","xrefs":{"bioportal":"1032"}},"wikidata":{"description":"identifier in the United States National Cancer Institute Thesaurus, vocabulary for clinical care, translational and basic research, etc","examples":["C120871","C12431","C75016"],"homepage":"http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=14.10d&code=C75016","name":"NCI Thesaurus ID","pattern":"^C\\d{3,7}$","prefix":"P1748","uri_format":"https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/$1","uri_format_rdf":"http://purl.obolibrary.org/obo/NCIT_$1"},"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["ecto","mco","ontoavida","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncit.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/ncit.obo"}],"description":"NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.","domain":"health","homepage":"https://github.com/ncit-obo-org/ncit-obo-edition","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"NCI Thesaurus OBO Edition","preferred_prefix":"NCIT","prefix":"ncit","repository":"https://github.com/ncit-obo-org/ncit-obo-edition","status":"orphaned"},"bioportal":{"contact":{"email":"ncithesaurus@mail.nih.gov","name":"NCI Thesaurus Mailbox"},"description":"Vocabulary for clinical care, translational and basic research, and public information and administrative activities.","homepage":"https://ncithesaurus.nci.nih.gov/ncitbrowser/","license":{"name":"CC-BY-4.0"},"name":"National Cancer Institute Thesaurus","prefix":"NCIT","version":"26.03e"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncit.owl"}],"description":"NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ncit/releases/2026-03-19/ncit.owl"},"homepage":"https://github.com/ncit-obo-org/ncit-obo-edition","name":"NCI Thesaurus OBO Edition","prefix":"ncit","tracker":"https://github.com/ncit-obo-org/ncit-obo-edition/issues","version":"2026-03-19"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NCIT/80/ncit.owl"}],"description":"NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.","homepage":"https://github.com/ncit-obo-org/ncit-obo-edition","name":"NCI Thesaurus OBO Edition","prefix":"NCIT"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Medical resources","homepage":"https://evsexplore.semantics.cancer.gov/evsexplore/welcome","name":"NCI thesaurus","prefix":"NCIt","uri_format":"https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/$1"},"ontobee":{"keywords":["obo","ontology"],"name":"NCI Thesaurus OBO Edition","prefix":"NCIT"},"cheminf":null,"fairsharing":{"description":"NCI Thesaurus (NCIt) provides reference terminology for many NCI and other systems. It covers vocabulary for clinical care, translational and basic research, and public information and administrative activities. NCIt features: stable, unique codes for biomedical concepts; preferred terms, synonyms, research codes, external source codes, and other information; over 100,000 textual definitions; links to NCI Metathesaurus and other information sources; and over 400,000 cross-links between concepts, providing formal logic-based definition of many concepts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP).","homepage":"https://ncit.nci.nih.gov","keywords":["Translational Medicine","Preclinical Studies","Biomedical Science","cancer","disease"],"license":{"url":"https://www.cancer.gov/policies"},"name":"NCI Thesaurus","prefix":"FAIRsharing.4cvwxa","publications":[{"doi":"10.3233/978-1-60750-949-3-33","pubmed":"15360769","title":"NCI Thesaurus: using science-based terminology to integrate cancer research results","url":"https://www.ncbi.nlm.nih.gov/pubmed/15360769","year":2004}],"repository":"https://github.com/NCI-Thesaurus/thesaurus-obo-edition","short_names":["NCIt"]},"biocontext":{"prefix":"NCIT","uri_format":"http://purl.obolibrary.org/obo/NCIT_$1"},"edam":null,"re3data":null,"hl7":{"description":"NCI Thesaurus, 2004. Bethesda, MD: National Cancer Institute, National Institutes of Health, July 2004.This OID entry has been rejected upon review, as the object has already been registered by the NCI (owners).","name":"NCI Thesaurus","preferred_prefix":"NCI","prefix":"2.16.840.1.113883.6.206"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"NCI Thesaurus (NCIt) provides reference terminology for many NCI and other systems. It covers vocabulary for clinical care, translational and basic research, and public information and administrative activities. NCIt features: stable, unique codes for biomedical concepts; preferred terms, synonyms, research codes, external source codes, and other information; over 100,000 textual definitions; links to NCI Metathesaurus and other information sources; and over 400,000 cross-links between concepts, providing formal logic-based definition of many concepts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP).","homepage":"https://ncit.nci.nih.gov","keywords":["Health/Disease","Ontology/Terminology/Nomenclature"],"name":"NCI Thesaurus","prefix":"nbdc02651","short_names":["NCIt"],"status":"active"},"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncit.owl"}],"description":"NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ncit/releases/2026-03-19/ncit.owl"},"homepage":"https://github.com/NCI-Thesaurus/thesaurus-obo-edition","keywords":["NFDI4CHEM","DataPLANT","life sciences, biology"],"name":"NCI Thesaurus OBO Edition","prefix":"ncit","tracker":"https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues"}},"ncro":{"prefix":"ncro","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/NCRO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0002927","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"http://purl.obolibrary.org/obo/ncro.owl","download_obo":"https://raw.githubusercontent.com/OmniSearch/ncro/master/src/ontology/ncro.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NCRO","biocontext":"NCRO","bioportal":"NCRO","fairsharing":"FAIRsharing.vppyga","obofoundry":"ncro","ols":"ncro","ontobee":"NCRO","wikidata.entity":"Q55118485"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27152146","doi":"10.1186/s13326-016-0066-0","pmc":"PMC4857245","title":"The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"huang@southalabama.edu","github":"Huang-OMIT","name":"Jingshan Huang","orcid":"0000-0003-2408-2883"},"description":"An ontology for non-coding RNA, both of biological origin, and engineered.","domain":"investigations","homepage":"http://omnisearch.soc.southalabama.edu/w/index.php/Ontology","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Non-Coding RNA Ontology","preferred_prefix":"NCRO","prefix":"ncro","repository":"https://github.com/OmniSearch/ncro","status":"active"},"bioportal":{"contact":{"email":"huang@southalabama.edu","name":"Jingshan Huang"},"description":"The NCRO is a reference ontology in the non-coding RNA (ncRNA) field, aiming to provide a common set of terms and relations that will facilitate the curation, analysis, exchange, sharing, and management of ncRNA structural, functional, and sequence data.","name":"Non-coding RNA Ontology","prefix":"NCRO","version":"Working version 06102015"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ncro.owl"}],"contact":{"email":""},"description":"An ontology for non-coding RNA, both of biological origin, and engineered.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ncro/2015-12-10/ncro-combined.owl"},"homepage":"http://omnisearch.soc.southalabama.edu/w/index.php/Ontology","name":"Non-Coding RNA Ontology","prefix":"ncro","tracker":"https://github.com/OmniSearch/ncro/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NCRO/13/ncro.owl"}],"description":"An ontology for non-coding RNA, both of biological origin, and engineered.","homepage":"http://omnisearch.soc.southalabama.edu/OntologyFile.aspx","name":"Non-Coding RNA Ontology","prefix":"NCRO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Non-Coding RNA Ontology","prefix":"NCRO"},"cheminf":null,"fairsharing":{"description":"The NCRO is a reference ontology in the non-coding RNA (ncRNA) field, aiming to provide a common set of terms and relations that will facilitate the curation, analysis, exchange, sharing, and management of ncRNA structural, functional, and sequence data.","homepage":"https://github.com/OmniSearch/ncro","keywords":["Genomics","ncRNA"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Non-coding RNA Ontology","prefix":"FAIRsharing.vppyga","publications":[{"doi":"10.1186/s13326-016-0066-0","title":"The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology","url":"http://dx.doi.org/10.1186/s13326-016-0066-0","year":2016}],"short_names":["NCRO"]},"biocontext":{"prefix":"NCRO","uri_format":"http://purl.obolibrary.org/obo/NCRO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ndc":{"prefix":"ndc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NDC","hl7":"2.16.840.1.113883.6.69","miriam":"ndc","n2t":"ndc","prefixcommons":"ndc","wikidata":"P3640","wikidata.entity":"Q6972354"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.","examples":["0002-1975-61"],"extras":{"miriam_id":"00000431","namespaceEmbeddedInLui":false},"homepage":"http://www.accessdata.fda.gov/scripts/cder/ndc/","name":"National Drug Code","pattern":"^\\d+\\-\\d+\\-\\d+$","prefix":"ndc","providers":[{"code":"","description":"Bio2RDF","homepage":"http://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ndc:$1"}],"status":"active","uri_format":"http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"},"n2t":{"description":"The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.","examples":["0002-1975-61"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.accessdata.fda.gov/scripts/cder/ndc/","name":"National Drug Code at Food and Drug Administration","pattern":"^\\d+\\-\\d+\\-\\d+","prefix":"ndc","uri_format":"http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"},"prefixcommons":{"description":"The National Drug Code (NDC) is a unique product identifier used in the United States for drugs intended for human use.","examples":["49288-0001_272c9910-2160-4d41-afbd-faab3055ba1d"],"homepage":"http://www.accessdata.fda.gov/scripts/cder/ndc/default.cfm","keywords":["chemical"],"name":"National Drug Code Directory","prefix":"ndc","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ndc:$1"}]},"wikidata":{"description":"pharmaceutical code issued by the Food and Drug Administration for every drug product (formulation) on the U.S. market. Includes a labeler code, product code and package code, unique for every drug product.","examples":["0009-0417","0037-6824","50242-090"],"homepage":"https://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html","name":"National Drug Code","prefix":"P3640","uri_format":"https://ndclist.com/ndc/$1","xrefs":{"wikidata":"Q6972354"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NDC","uri_format":"http://identifiers.org/ndc/$1"},"edam":null,"re3data":null,"hl7":{"description":"National Drug Codes System (which includes both the National Drug Codes (NDC) and the National Health Related Item Codes (NHRIC)).","extras":{"organization":"FDA Data Standards Council"},"homepage":"http://www.fda.gov/ForIndustry/DataStandards/default.htm","name":"National Drug Codes System","preferred_prefix":"ndc","prefix":"2.16.840.1.113883.6.69","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nddf":{"prefix":"nddf","name":"National Drug Data File","description":"FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.","pattern":"^\\d{6}$","uri_format":"http://purl.bioontology.org/ontology/NDDF/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"002678","example_extras":null,"example_decoys":null,"license":"https://uts.nlm.nih.gov/uts/assets/LicenseAgreement.pdf","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NDDF","biolink":"NDDF","bioportal":"NDDF","fairsharing":"FAIRsharing.8qcbs0","hl7":"2.16.840.1.113883.6.208"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"cs@firstdatabank.com","name":"First DataBank Customer Support"},"description":"FDB MedKnowledge, formerly National Drug Data File (NDDF) Plus Source Vocabulary
FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.
","homepage":"http://www.fdbhealth.com/fdb-medknowledge/","name":"National Drug Data File","prefix":"NDDF","version":"2025_08_13"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"National Drug Data File Plus Source Vocabulary","name":"National Drug Data File","prefix":"NDDF","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"NDDF","uri_format":"http://purl.bioontology.org/ontology/NDDF/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The National Drug Data File vocabulary supports clinical research and patient care. Please note that we have been unable to confirm the current status of NDDF and its relationship with FDB MedKnowledge. Until that time, the FAIRsharing team has marked this resource as having an Uncertain status. Please get in touch if you have any information.","homepage":"http://bioportal.bioontology.org/ontologies/1424","keywords":["Medicinal Chemistry","Biomedical Science","drug","chemical entity"],"license":{"url":"https://uts.nlm.nih.gov/license.html"},"name":"National Drug Data File","prefix":"FAIRsharing.8qcbs0","short_names":["NDDF"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"National Drug Data File Plus Source Vocabulary 2004. San Bruno, CA: First DataBank, March 11, 2004.This entry was generated to support the Sources in the UMLS. Additional metadata is still missing.","name":"National Drug Data File","preferred_prefix":"nddf","prefix":"2.16.840.1.113883.6.208","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ndex":{"prefix":"ndex","name":"Network Data Exchange","description":"The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.","pattern":null,"uri_format":"https://www.ndexbio.org/viewer/networks/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ndexbio.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"aa78a43f-9c4d-11eb-9e72-0ac135e8bacf","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"re3data":"r3d100012690"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34570431","doi":"10.1002/cpz1.258","pmc":"PMC8544027","title":"NDEx: Accessing Network Models and Streamlining Network Biology Workflows","year":2021},{"pubmed":"29092941","doi":"10.1158/0008-5472.can-17-0606","pmc":"PMC5679399","title":"NDEx 2.0: A Clearinghouse for Research on Cancer Pathways","year":2017},{"pubmed":"28150243","doi":"10.1007/978-1-4939-6783-4_13","pmc":null,"title":"NDEx: A Community Resource for Sharing and Publishing of Biological Networks","year":2017},{"pubmed":"26594663","doi":"10.1016/j.cels.2015.10.001","pmc":"PMC4649937","title":"NDEx, the Network Data Exchange","year":2015}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.\nThe NDEx Project maintains a free, public website; alternatively, users can also decide to run their own copies of the NDEx Server software in cases where the stored networks must be kept in a highly secure environment (such as for HIPAA compliance) or where high application load is incompatible with a shared public resource.","homepage":"https://home.ndexbio.org/index/","license":{"name":"BSD"},"name":"Network Data Exchange","prefix":"r3d100012690","prefix_synonyms":["NDEx"],"xrefs":{"doi":"10.17616/R31NJMAA"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ndfrt":{"prefix":"ndfrt","name":"National Drug File - Reference Terminology","description":"NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].","pattern":null,"uri_format":"https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NDFRT&code=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"N0000001662","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NDFRT","bioportal":"NDFRT","fairsharing":"FAIRsharing.901nkj","hl7":"2.16.840.1.113883.6.209","ontobee":"NDF-RT","prefixcommons":"ndfrt","wikidata":"P2115"},"synonyms":["NUI","ndf-rt"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"14728237","doi":null,"pmc":"PMC1480331","title":"Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications","year":2003},{"pubmed":"14728237","doi":null,"pmc":null,"title":"Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11","examples":["N0000175600"],"homepage":"http://www.va.gov","name":"National Drug File","pattern":"^N\\d+$","prefix":"ndfrt","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/ndfrt:$1"}],"uri_format_rdf":"http://purl.bioontology.org/ontology/NDFRT/$1","xrefs":{"bioportal":"1352"}},"wikidata":{"description":"identifier for the National Drug File Reference Terminology","examples":["N0000146291","N0000147795","N0000183250"],"homepage":"https://rxnav.nlm.nih.gov/","name":"NDF-RT ID","pattern":"^N[0-9]{10}$","prefix":"P2115","uri_format":"https://bioportal.bioontology.org/ontologies/NDFRT?p=classes&conceptid=$1","uri_format_rdf":"http://purl.bioontology.org/ontology/NDFRT/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"michael.lincoln@va.gov","name":"Michael J. Lincoln MD"},"description":"National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11","homepage":"http://www.va.gov","name":"National Drug File - Reference Terminology","prefix":"NDFRT","publications":[{"url":"http://www.va.gov"}],"version":"NDFRT_2018_02_05_18_03_05"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11","homepage":"http://www.va.gov","name":"National Drug File - Reference Terminology","prefix":"NDFRT","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["ontology"],"name":"National Drug File Reference Terminology","prefix":"NDF-RT"},"cheminf":null,"fairsharing":{"description":"The National Drug File Reference Terminology contains a novel reference hierarchy to describe physiologic effects (PE) of drugs.","homepage":"http://bioportal.bioontology.org/ontologies/NDFRT","keywords":["Physiology","Biomedical Science","Health Science","Medicine","Drug name","chemical entity"],"license":{"url":"https://uts.nlm.nih.gov/license.html"},"name":"National Drug File","prefix":"FAIRsharing.901nkj","publications":[{"pubmed":"14728237","title":"Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications","url":"https://www.ncbi.nlm.nih.gov/pubmed/14728237","year":2004}],"short_names":["NDFRT"]},"biocontext":null,"edam":null,"re3data":null,"hl7":{"description":"National Drug File - Reference Terminology, 2004_01. Washington, DC: U.S. Department of Veterans Affairs, Veterans Health Administration, January 2004.","name":"National Drug File - Reference Terminology","preferred_prefix":"NDFRT","prefix":"2.16.840.1.113883.6.209","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nembase":{"prefix":"nembase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"nembase"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins.","examples":["NBC00001"],"homepage":"http://www.nematodes.org","keywords":["RNA","protein","DNA"],"name":"Nematode & Neglected Genomics","pattern":"^NBC\\d+$","prefix":"nembase","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nembase:$1"}],"uri_format":"http://www.nematodes.org/nembase4/cluster.php?cluster=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nemo":{"prefix":"nemo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"nemo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.","examples":["smp-m3w9hbe"],"extras":{"miriam_id":"00000744","namespaceEmbeddedInLui":false},"homepage":"https://www.nemoarchive.org","name":"Neuroscience Multi-Omic BRAIN Initiative Data","pattern":"^[a-z]{3}-[a-km-z0-9]{7}$","prefix":"nemo","status":"active","uri_format":"https://assets.nemoarchive.org/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nemo.competence":{"prefix":"nemo.competence","name":"Competence Ontology","description":"A small ontology expressing skills and competencies.","pattern":null,"uri_format":"http://purl.org/nemo/competence#$1","uri_format_resolvable":null,"rdf_uri_format":"http://purl.org/nemo/competence#$1","providers":null,"homepage":"https://github.com/jpalmeida/competence-ontology","repository":"https://github.com/jpalmeida/competence-ontology","contact":{"name":"João Paulo A. Almeida","orcid":null,"email":null,"github":"jpalmeida"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CognitiveCompetence","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/jpalmeida/competence-ontology/raw/refs/heads/main/competence.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["competence","ontology","skills"],"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.1109/edoc52215.2021.00018","pmc":null,"title":"Towards Ontology-based Competence Modeling in Enterprise Architecture","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1704,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nemo2":{"prefix":"nemo2","name":null,"description":null,"pattern":null,"uri_format":"http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Gwen Frishkoff","orcid":"0000-0003-0612-0970","email":"gfrishkoff@gsu.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000196","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NEMO","bioportal":"NEMO","fairsharing":"FAIRsharing.n66krd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22180824","doi":"10.4056/sigs.2025347","pmc":"PMC3235514","title":"Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data","year":2011},{"pubmed":null,"doi":"10.1038/npre.2009.3458.1","pmc":null,"title":"Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"gfrishkoff@gsu.edu","name":"Gwen Frishkoff"},"description":"Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). Working (unstable), Release (stable), and Old (archival) versions of NEMO can be found on sourceforge: http://sourceforge.net/projects/nemoontologies/.","homepage":"http://nemo.nic.uoregon.edu","name":"Neural ElectroMagnetic Ontology","prefix":"NEMO","publications":[{"url":"http://nemo.nic.uoregon.edu/wiki/Publications"}],"version":"v3.10"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NEMO/24/nemo.owl"}],"description":"Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). Working (unstable), Release (stable), and Old (archival) versions of NEMO can be found on sourceforge: http://sourceforge.net/projects/nemoontologies/.","homepage":"http://nemo.nic.uoregon.edu","name":"Neural ElectroMagnetic Ontology","prefix":"NEMO","version":"v3.10"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.","homepage":"http://aimlab.cs.uoregon.edu/NEMO/web/index.html","keywords":["Life Science","Neurobiology","Cognitive Neuroscience","Imaging","neuron","cognition","electroencephalography","brain"],"name":"Neural ElectroMagnetic Ontologies","prefix":"FAIRsharing.n66krd","publications":[{"doi":"10.4056/sigs.2025347","pubmed":"22180824","title":"Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data","url":"http://doi.org/10.4056/sigs.2025347","year":2011},{"doi":"10.1038/npre.2009.3458.1","title":"Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials","url":"http://doi.org/10.1038/npre.2009.3458.1","year":2009}],"short_names":["NEMO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nepomuk.nao":{"prefix":"nepomuk.nao","name":"NEPOMUK Annotation Ontology Specification","description":"The annotation ontology provides vocabulary that enables users to attach custom descriptions, identifiers, tags and ratings to resources on their desktop. Via other properties, the user is also able to make generic relationships between related resources explicit. Some relationships between resources are too general to be included at the domain ontology level. Instead, these properties are also defined in the annotation ontology. Given the high-level status of this ontology, these propreties can be used to link any related resources on the user's desktop, as well as provide custom human-readable textual annotations. (from homepage)","pattern":null,"uri_format":"http://www.semanticdesktop.org/ontologies/2007/08/15/nao#$1","uri_format_resolvable":null,"rdf_uri_format":"http://www.semanticdesktop.org/ontologies/2007/08/15/nao#$1","providers":null,"homepage":"http://www.semanticdesktop.org/ontologies/nao","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"created","example_extras":null,"example_decoys":null,"license":"https://www.semanticdesktop.org/ontologies/2007/11/01/pimo/LICENSE.txt","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nepomuk.nco":{"prefix":"nepomuk.nco","name":"NEPOMUK Contact Ontology","description":"NEPOMUK Contact Ontology describes contact information, common in many places on the desktop. It evolved from the VCARD specification (RFC 2426) and has been inspired by the Vcard Ontology by Renato Ianella. The scope of NCO is much broader though. This document gives an overview of the classes, properties and intended use cases of the NCO ontology. (from homepage)","pattern":null,"uri_format":"http://www.semanticdesktop.org/ontologies/2007/03/22/nco#$1","uri_format_resolvable":null,"rdf_uri_format":"http://www.semanticdesktop.org/ontologies/2007/03/22/nco#$1","providers":null,"homepage":"http://www.semanticdesktop.org/ontologies/2007/03/22/nco","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"fullname","example_extras":null,"example_decoys":null,"license":"https://www.semanticdesktop.org/ontologies/2007/11/01/pimo/LICENSE.txt","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nepomuk.pimo":{"prefix":"nepomuk.pimo","name":"Personal Information Model","description":"The PIMO Ontology can be used to express Personal Information Models of individuals. It is based on RDF and NRL, the NEPOMUK Representational Language and other Semantic Web ontologies. This document describes the principle elements of the language and how to use them. (from homepage)","pattern":null,"uri_format":"http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#$1","uri_format_resolvable":null,"rdf_uri_format":"http://www.semanticdesktop.org/ontologies/2007/11/01/pimo#$1","providers":null,"homepage":"http://www.semanticdesktop.org/ontologies/pimo","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Note","example_extras":null,"example_decoys":null,"license":"https://www.semanticdesktop.org/ontologies/2007/11/01/pimo/LICENSE.txt","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neurolex":{"prefix":"neurolex","name":"NIF Standard Ontology: Neurolex","description":null,"pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"4","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEUROLEX","miriam":"neurolex","n2t":"neurolex","prefixcommons":"neurolex"},"synonyms":["NLX","nlx"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18975148","doi":"10.1007/s12021-008-9032-z","pmc":"PMC2743139","title":"The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience","year":2008},{"pubmed":"18975148","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18975148","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).","examples":["Birnlex_721"],"extras":{"miriam_id":"00000126","namespaceEmbeddedInLui":false},"homepage":"https://scicrunch.org/scicrunch/interlex/dashboard","name":"NeuroLex","pattern":"^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$","prefix":"neurolex","status":"active","uri_format":"https://scicrunch.org/scicrunch/interlex/search?q=$1"},"n2t":{"description":"The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).","examples":["Birnlex_721"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.neurolex.org/wiki/Main_Page","name":"NeuroLex Neuroscience Lexicon","pattern":"^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$","prefix":"neurolex","uri_format":"http://www.neurolex.org/wiki/$1"},"prefixcommons":{"description":"The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).","examples":["Birnlex_721"],"homepage":"http://www.neurolex.org/wiki/Main_Page","keywords":["classification","neuroscience","ontology"],"name":"NeuroLex","pattern":"^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO)\\d+$","prefix":"neurolex","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/neurolex:$1"}],"publications":[{"pubmed":"18975148"}],"uri_format":"http://www.neurolex.org/wiki/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEUROLEX","uri_format":"http://identifiers.org/neurolex/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neuromorpho":{"prefix":"neuromorpho","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Giorgio Ascoli","orcid":"0000-0002-0964-676X","email":"Ascoli@gmu.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEUROMORPHO","edam":"2657","miriam":"neuromorpho","n2t":"neuromorpho","prefixcommons":"neuromorpho"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16552417","doi":"10.1038/nrn1885","pmc":null,"title":"Mobilizing the base of neuroscience data: the case of neuronal morphologies","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons.","examples":["Rosa2"],"extras":{"miriam_id":"00000095","namespaceEmbeddedInLui":false},"homepage":"http://neuromorpho.org/index.jsp","name":"NeuroMorpho","pattern":"^\\w+$","prefix":"neuromorpho","status":"active","uri_format":"http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"},"n2t":{"description":"NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons.","examples":["Rosa2"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://neuromorpho.org/index.jsp","name":"NeuroMorpho","pattern":"^\\w+$","prefix":"neuromorpho","uri_format":"http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"},"prefixcommons":{"description":"NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons.","examples":["Rosa2"],"homepage":"http://neuromorpho.org/neuroMorpho/index.jsp","keywords":["anatomy","structure"],"license":{"name":"CC-BY-3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"NeuroMorpho","pattern":"^\\w+$","prefix":"neuromorpho","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/neuromorpho:$1"}],"publications":[{"pubmed":"16552417"}],"uri_format":"http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEUROMORPHO","uri_format":"http://identifiers.org/neuromorpho/$1"},"edam":{"description":"A unique identifier of a neuron from the NeuroMorpho database.","name":"NeuroMorpho","prefix":"2657"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neuronames":{"prefix":"neuronames","name":"NeuroNames","description":"BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.","pattern":"^\\d+$","uri_format":"http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"neuronames.alt1","name":"Neuronames Alternate 1","description":"Alternate URI inside neuronames, appearning in birnlex","homepage":"http://braininfo.rprc.washington.edu","uri_format":"http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"http://braininfo.rprc.washington.edu/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"268","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P4394","wikidata.entity":"Q1773567"},"synonyms":["neuroname"],"keywords":null,"domain":null,"references":["https://en.wikipedia.org/wiki/NeuroNames"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"numeric identifier of a brain structure in the BrainInfo (NeuroNames) database in plain mode","examples":["21","22","300"],"name":"NeuroNames ID (plain mode)","prefix":"P4394","uri_format":"http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1","xrefs":{"wikidata":"Q1773567"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neurondb":{"prefix":"neurondb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEURONDB","edam":"2656","miriam":"neurondb","n2t":"neurondb","prefixcommons":"neurondb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.","examples":["265"],"extras":{"miriam_id":"00000094","namespaceEmbeddedInLui":false},"homepage":"http://senselab.med.yale.edu/NeuronDB/","name":"NeuronDB","pattern":"^\\d+$","prefix":"neurondb","status":"deprecated","uri_format":"http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"},"n2t":{"description":"NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.","examples":["265"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://senselab.med.yale.edu/NeuronDB/","name":"NeuronDB at SenseLab","pattern":"^\\d+$","prefix":"neurondb","uri_format":"http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"},"prefixcommons":{"description":"NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.","examples":["265"],"homepage":"http://senselab.med.yale.edu/NeuronDB/","keywords":["anatomy","structure"],"license":{"name":"CC-BY-3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"NeuronDB","pattern":"^\\d+$","prefix":"neurondb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/neurondb:$1"}],"uri_format":"http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEURONDB","uri_format":"http://identifiers.org/neurondb/$1"},"edam":{"description":"A unique identifier of a neuron from the NeuronDB database.","name":"NeuronDB","prefix":"2656"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neurovault.collection":{"prefix":"neurovault.collection","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEUROVAULT.COLLECTION","miriam":"neurovault.collection","n2t":"neurovault.collection"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.","examples":["3304"],"extras":{"miriam_id":"00000635","namespaceEmbeddedInLui":false},"homepage":"http://neurovault.org","name":"NeuroVault Collection","pattern":"^[1-9][0-9]*$","prefix":"neurovault.collection","status":"active","uri_format":"https://neurovault.org/collections/$1"},"n2t":{"description":"Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.","examples":["3304"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://neurovault.org","name":"NeuroVault Collection","pattern":"^[1-9][0-9]*$","prefix":"neurovault.collection","uri_format":"https://neurovault.org/collections/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEUROVAULT.COLLECTION","uri_format":"http://identifiers.org/neurovault.collection/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"neurovault.image":{"prefix":"neurovault.image","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEUROVAULT.IMAGE","miriam":"neurovault.image","n2t":"neurovault.image"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.","examples":["58788"],"extras":{"miriam_id":"00000638","namespaceEmbeddedInLui":false},"homepage":"http://neurovault.org","name":"NeuroVault Image","pattern":"^[1-9][0-9]*$","prefix":"neurovault.image","status":"active","uri_format":"https://neurovault.org/images/$1"},"n2t":{"description":"Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.","examples":["58788"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://neurovault.org","name":"NeuroVault","pattern":"^[1-9][0-9]*$","prefix":"neurovault.image","uri_format":"https://neurovault.org/images/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEUROVAULT.IMAGE","uri_format":"http://identifiers.org/neurovault.image/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nextdb":{"prefix":"nextdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEXTDB","integbio":"nbdc00594","miriam":"nextdb","n2t":"nextdb","ncbi":"NextDB","prefixcommons":"nextdb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.","examples":["6b1"],"extras":{"miriam_id":"00000289","namespaceEmbeddedInLui":false},"homepage":"http://nematode.lab.nig.ac.jp/","name":"NEXTDB","pattern":"^[A-Za-z0-9]+$","prefix":"nextdb","status":"active","uri_format":"http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"},"n2t":{"description":"NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.","examples":["6b1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://nematode.lab.nig.ac.jp/","name":"NEXTDB at Shizuoka","pattern":"^[A-Za-z0-9]+$","prefix":"nextdb","uri_format":"http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"},"prefixcommons":{"description":"The Kohara lab has been constructing an expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from the expression pattern project.","examples":["C24A3"],"homepage":"http://nematode.lab.nig.ac.jp/","keywords":["gene expression","genome","DNA"],"name":"Nematode Expression Pattern DataBase","pattern":"^[A-Z]\\d+$","prefix":"nextdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nextdb:$1"}],"uri_format":"http://nematode.lab.nig.ac.jp/cgi-bin/dbest/SrchByCosmid.sh?csmd=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["CELK01662"],"homepage":"http://nematode.lab.nig.ac.jp/","name":"Nematode Expression Pattern DataBase","prefix":"NextDB"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEXTDB","uri_format":"http://identifiers.org/nextdb/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"NEXTDB is a database of nematode expression data. The database contains EST information as well as images from in situ hybridization. Maps of genetic entities, images of hybridizations, sequences, and homology search are available, as is a list of RNAi phenotypes.","homepage":"http://nematode.nig.ac.jp","keywords":["cDNA/EST","Organism","Expression","Image/Movie"],"name":"The Nematode Expression Pattern DataBase","prefix":"nbdc00594","publications":[{"pubmed":"11231151"}],"short_names":["NEXTDB"],"status":"active","xrefs":{"fairsharing":"biodbcore-000466"}},"pathguide":null,"tib":null},"nextprot":{"prefix":"nextprot","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nextprot","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NEXTPROT","integbio":"nbdc02107","miriam":"nextprot","n2t":"nextprot","wikidata.entity":"Q6983890"},"synonyms":["NXP"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31724716","doi":"10.1093/nar/gkz995","pmc":"PMC7145669","title":"The neXtProt knowledgebase in 2020: data, tools and usability improvements","year":2020},{"pubmed":"27899619","doi":"10.1093/nar/gkw1062","pmc":"PMC5210547","title":"The neXtProt knowledgebase on human proteins: 2017 update","year":2016},{"pubmed":"25593349","doi":"10.1093/nar/gku1178","pmc":"PMC4383972","title":"The neXtProt knowledgebase on human proteins: current status","year":2015},{"pubmed":"23205526","doi":"10.1021/pr300830v","pmc":null,"title":"neXtProt: organizing protein knowledge in the context of human proteome projects","year":2012},{"pubmed":"22139911","doi":"10.1093/nar/gkr1179","pmc":"PMC3245017","title":"neXtProt: a knowledge platform for human proteins","year":2011},{"pubmed":"22139911","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25593349","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"23205526","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"27899619","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.","examples":["NX_O00165"],"extras":{"miriam_id":"00000236","namespaceEmbeddedInLui":false},"homepage":"https://www.nextprot.org/","name":"nextProt","pattern":"^NX_\\w+$","prefix":"nextprot","status":"active","uri_format":"https://www.nextprot.org/db/entry/$1"},"n2t":{"description":"neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.","examples":["NX_O00165"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.nextprot.org/","name":"nextProt at Swiss Institute of Bioinformatics","pattern":"^NX_\\w+","prefix":"nextprot","uri_format":"https://www.nextprot.org/db/entry/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NEXTPROT","uri_format":"http://identifiers.org/nextprot/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.","homepage":"https://www.nextprot.org","keywords":["Genetic variation","Protein","Cell/Organelle","Genome/Gene","Health/Disease","Sequence","Expression"],"name":"neXtProt","prefix":"nbdc02107","publications":[{"pubmed":"22139911"},{"pubmed":"25593349"},{"pubmed":"23205526"},{"pubmed":"27899619"}],"status":"inactive","xrefs":{"fairsharing":"FAIRsharing.62evqh"}},"pathguide":null,"tib":null},"nextprot.family":{"prefix":"nextprot.family","name":"neXtProt family","description":"NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)","pattern":"^\\d+$","uri_format":"https://www.nextprot.org/term/FA-$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nextprot.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01406","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nextprot","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NXPFA"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nexus":{"prefix":"nexus","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"version","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"nexus"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/nexusformat/NeXusOntology/refs/heads/main/ontology/NeXusOntology.owl"}],"description":"NeXusOntology: Machine-readable ontology of the NeXus definitions","homepage":"https://github.com/nexusformat/NeXusOntology","keywords":["FAIRmat","physics"],"name":"NeXusOntology","prefix":"nexus","tracker":"https://github.com/nexusformat/NeXusOntology/issues","uri_format":"http://purl.org/nexusformat/definitions/NeXusOntology#$1"}},"nfdi.core":{"prefix":"nfdi.core","name":"NFDI Core Ontology","description":"A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more","pattern":"^\\d+$","uri_format":"https://nfdi.fiz-karlsruhe.de/ontology/NFDI_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ise-fizkarlsruhe.github.io/nfdicore/","repository":"https://github.com/ISE-FIZKarlsruhe/nfdicore","contact":{"name":"Jörg Waitelonis","orcid":"0000-0001-7192-7143","email":"joerg.waitelonis@fiz-karlsruhe.de","github":"joergwa"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000106","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/ISE-FIZKarlsruhe/nfdicore/raw/refs/heads/main/nfdicore.owl","download_obo":null,"download_json":null,"download_rdf":"https://github.com/ISE-FIZKarlsruhe/nfdicore/raw/refs/heads/main/nfdicore.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1448,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nfdi.kgi":{"prefix":"nfdi.kgi","name":"NFDI Knowledge Graph Registry","description":"Assigns identifiers to knowledge graphs (KGs) that are used and/or maintained within any NFDI consortium.","pattern":"^KGR\\d+$","uri_format":"http://kgi.services.base4nfdi.de/entity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://kgi.services.base4nfdi.de","repository":"https://github.com/KGI4NFDI/kgi4nfdi_registry_data","contact":{"name":"Lozana Rossenova","orcid":"0000-0002-5190-1867","email":"lozana.rossenova@tib.eu","github":"lozanaross"},"contact_extras":null,"contact_group_email":"kgi4nfdi@lists.nfdi.de","contact_page":null,"owners":null,"example":"KGR1","example_extras":null,"example_decoys":null,"license":"CC-BY-SA-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["knowledge graph"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1665,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nfdi4chem.ontocape":{"prefix":"nfdi4chem.ontocape","name":"Ontology for computer aided process engineering","description":"OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"GPL-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This ontology ecosystem is near unusable","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nfdi4chem.osmo":{"prefix":"nfdi4chem.osmo","name":"Ontology for simulation, modelling, and optimization","description":"OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://zenodo.org/record/5237774#.YXq72hxCRGo","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"application_case","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"bartoc":"20710","tib":"osmo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"locked behind a private GitLab instance","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core.","homepage":"https://doi.org/10.5281/zenodo.5237774","license":{"spdx":"http://rightsstatements.org/vocab/InC/1.0","url":"http://rightsstatements.org/vocab/InC/1.0/"},"name":"Ontology for simulation, modelling, and optimization","prefix":"20710","short_names":["OSMO"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://gitlab.com/vimmp-semantics/vimmp-ontologies/-/raw/alignment-with-emmo-2022/osmo/osmo.ttl"}],"description":"OSMO is an Ontology for Simulation, Modelling, and Optimization","extras":{"version.iri":"https://purl.org/vimmp/osmo"},"keywords":["NFDI4CAT","material science","computer science"],"name":"Ontology for simulation, modelling, and optimization","prefix":"osmo","uri_format":"https://purl.org/vimmp/osmo#$1"}},"nfdi4culture.cto":{"prefix":"nfdi4culture.cto","name":"NFDI4Culture Ontology","description":"The NFDI4Culture Ontology (CTO) is a domain-specific ontology module developed within the Task Area 5 of the NFDI4Culture initiative. (from homepage)","pattern":"^\\d{7}$","uri_format":"https://nfdi4culture.de/ontology/CTO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nfdi4culture.de/ontology/","repository":"https://github.com/ISE-FIZKarlsruhe/nfdi4culture","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001003","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/ISE-FIZKarlsruhe/nfdi4culture/raw/refs/heads/main/cto.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"cto"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/ISE-FIZKarlsruhe/nfdi4culture/refs/heads/main/cto-full.ttl"}],"description":"The NFDI4Culture Ontology (CTO) models cultural heritage research resources with the goal of enabling a research data index. CTO is a domain-specific module built on top of the mid-level NFDIcore Ontology v.3 (https://ise-fizkarlsruhe.github.io/nfdicore/) and is aligned with the Basic Formal Ontology (BFO) 2020. It describes and interlinks the diverse entities that exist within the communitys research (meta)data, including connections between persons, organizations, places and events, media objects, legal statements, external vocabulary references, musical incipits, and more. Further infomration can be found at in the detailed documentation: https://nfdi.fiz-karlsruhe.de/4culture/","extras":{"version.iri":"https://nfdi4culture.de/ontology/3.0.0"},"homepage":"https://nfdi.fiz-karlsruhe.de/4culture/","keywords":["NFDI4CULTURE","architecture","other subjects"],"name":"NFDI4Culture Ontology","prefix":"cto","tracker":"https://github.com/ISE-FIZKarlsruhe/nfdi4culture/issues","uri_format":"https://nfdi4culture.de/ontology/CTO_$1"}},"nfdi4culture.id":{"prefix":"nfdi4culture.id","name":"NFDI4Culture Metadata API","description":"The NFDI4Culture portal offers all content as Linked Open Data over this RESTful API. The API implements the Hydra-Specification of the W3C Hydra Community Group. The semantic description of this API can be retrieved by clients via the Hydra documentation file (JSON). Each metadata record offered via this API can also be retrieved in one of following machine-readable LOD serializations. The API is the basis for the Culture Research Information Graph, which together with the Culture Research Data Graph forms the [Culture Knowledge Graph](https://nfdi4culture.de/services/details/culture-knowledge-graph.html) (for more details see [this presentation](https://doi.org/10.5281/zenodo.7748740)) (from homepage).","pattern":null,"uri_format":"https://nfdi4culture.de/id/$1","uri_format_resolvable":null,"rdf_uri_format":"https://nfdi4culture.de/id/$1","providers":null,"homepage":"https://nfdi4culture.de/id","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"E4330","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["digital humanities","generic","organization"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1627,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nfdi4dso":{"prefix":"nfdi4dso","name":"NFDI4DS Ontology","description":"The NFDI4DS ontology (nfdi4dso) is an ontology describing various resources all resources (datasets, data providers, persons, projects and other entities) within the domain of NFDI4DataScience. nfdi4dso is a module that builds upon the NFDIcore Ontology (https://ise-fizkarlsruhe.github.io/nfdicore/2.0.0/) and maintains alignment with the Basic Formal Ontology (BFO). [from homepage]","pattern":null,"uri_format":"https://nfdi.fiz-karlsruhe.de/nfdi4dso/$1","uri_format_resolvable":null,"rdf_uri_format":"https://nfdi.fiz-karlsruhe.de/nfdi4dso/$1","providers":null,"homepage":"https://nfdi.fiz-karlsruhe.de/nfdi4dso/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"City","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://ise-fizkarlsruhe.github.io/NFDI4DS-Ontology/ontology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nfportal.tool":{"prefix":"nfportal.tool","name":"Neurofibromatosis Data Portal Tools","description":"Identifiers represent experimental tools and resources for neurofibromatosis (NF) research in the NF Data Portal Tools catalog.","pattern":"^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$","uri_format":"https://nf.synapse.org/Explore/Tools/DetailsPage?resourceId=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nf.synapse.org","repository":null,"contact":{"name":"Robert Allaway","orcid":"0000-0003-3573-3565","email":"robert.j.allaway@gmail.com","github":"allaway"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"02dacc42-ea46-48fb-a4df-7a875d801086","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["experimental tools","neurofibromatosis","research resources"],"domain":null,"references":null,"publications":[{"pubmed":"31836719","doi":"10.1038/s41597-019-0317-x","pmc":"PMC6910996","title":"Engaging a community to enable disease-centric data sharing with the NF Data Portal","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Kangho Ji","orcid":"0009-0009-3402-8013","email":"ji.kang@northeastern.edu","github":"kanghosaeyo"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1724,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ngbo":{"prefix":"ngbo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/NGBO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6000122","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NGBO","bioportal":"NGBO","obofoundry":"ngbo","ols":"ngbo","ontobee":"NGBO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ngbo.owl"}],"contact":{"email":"dal.alghamdi92@gmail.com","github":"dalalghamdi","name":"Dalia Alghamdi","orcid":"0000-0002-2801-0767"},"description":"The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.","domain":"investigations","homepage":"https://github.com/Dalalghamdi/NGBO","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Next Generation Biobanking Ontology","preferred_prefix":"NGBO","prefix":"ngbo","repository":"https://github.com/Dalalghamdi/NGBO","status":"active"},"bioportal":{"contact":{"email":"dal.alghamdi92@gmail.com","name":"Dalia Alghamdi"},"description":"The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.","homepage":"https://github.com/Dalalghamdi/NGBO","name":"Next Generation Biobanking Ontology","prefix":"NGBO","version":"2024-08-27"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/ngbo.owl"}],"description":" Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.","extras":{"version.iri":"http://purl.obolibrary.org/obo/ngbo/2024-08-27/ngbo.owl"},"homepage":"https://github.com/Dalalghamdi/NGBO","name":" Next generation biobanking ontology(NGBO).","prefix":"ngbo","tracker":"https://github.com/Dalalghamdi/NGBO/issues","version":"2024-08-27"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NGBO/3/ngbo.owl"}],"description":"The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.","homepage":"https://github.com/Dalalghamdi/NGBO","name":"Next Generation Biobanking Ontology","prefix":"NGBO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Next Generation Biobanking Ontology","prefix":"NGBO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ngl":{"prefix":"ngl","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NGL","miriam":"ngl","n2t":"ngl"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.","examples":["GLDS-141"],"extras":{"miriam_id":"00000618","namespaceEmbeddedInLui":false},"homepage":"https://genelab-data.ndc.nasa.gov/genelab/","name":"NASA GeneLab","pattern":"^GLDS-\\d+$","prefix":"ngl","status":"active","uri_format":"https://genelab-data.ndc.nasa.gov/genelab/accession/$1"},"n2t":{"description":"NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.","examples":["GLDS-141"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://genelab-data.ndc.nasa.gov/genelab/","name":"NASA GeneLab","pattern":"^GLDS-\\d+$","prefix":"ngl","uri_format":"https://genelab-data.ndc.nasa.gov/genelab/accession/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NGL","uri_format":"http://identifiers.org/ngl/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nhcdr":{"prefix":"nhcdr","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ND50028","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"NHCDR"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://stemcells.nindsgenetics.org","name":"NINDS Human Cell and Data Repository","prefix":"NHCDR","uri_format":"https://stemcells.nindsgenetics.org?line=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"niaest":{"prefix":"niaest","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NIAEST","miriam":"niaest","n2t":"niaest","ncbi":"niaEST","prefixcommons":"niaest"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"14744099","doi":"10.1016/j.crvi.2003.09.008","pmc":null,"title":"The NIA cDNA project in mouse stem cells and early embryos","year":2003}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.","examples":["J0705A10"],"extras":{"miriam_id":"00000305","namespaceEmbeddedInLui":false},"homepage":"http://lgsun.grc.nia.nih.gov/cDNA/","name":"NIAEST","pattern":"^\\w\\d{4}\\w\\d{2}(\\-[35])?$","prefix":"niaest","status":"deprecated","uri_format":"http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"},"n2t":{"description":"A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.","examples":["J0705A10"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://lgsun.grc.nia.nih.gov/cDNA/","name":"NIAEST at National Institute on Aging","pattern":"^\\w\\d{4}\\w\\d{2}(\\-[35])?$","prefix":"niaest","uri_format":"http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"},"prefixcommons":{"description":"A searchable mouse cDNA library.","examples":["J0705A10-3"],"homepage":"http://lgsun.grc.nia.nih.gov/cDNA/cDNA.html","keywords":["DNA"],"name":"NIA Mouse cDNA Project","pattern":"^[A-Z,0-9]+$","prefix":"niaest","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/niaest:$1"}],"uri_format":"http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["L0304H12-3"],"homepage":"http://esbank.nia.nih.gov/","name":"NIA Mouse cDNA Project","prefix":"niaEST"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NIAEST","uri_format":"http://identifiers.org/niaest/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"niaid.chemdb":{"prefix":"niaid.chemdb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://chemdb.niaid.nih.gov","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P2065"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"ID in NIAID ChemDB","examples":["059486","070944","112081"],"name":"NIAID ChemDB ID","prefix":"P2065","uri_format":"http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nif.cell":{"prefix":"nif.cell","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Fahim Imam","orcid":"0000-0003-4752-543X","email":"smtifahim@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NIFCELL","biocontext":"NIF_CELL","bioportal":"NIFCELL","fairsharing":"FAIRsharing.jmg2st","obofoundry":"nif_cell"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"smtifahim@gmail.com","name":"Fahim Imam","orcid":"0000-0003-4752-543X"},"description":"Neuronal cell types","domain":"anatomy and development","homepage":"http://neuinfo.org/","name":"NIF Cell","preferred_prefix":"NIF_CELL","prefix":"nif_cell","status":"inactive"},"bioportal":{"contact":{"email":"smtifahim@gmail.com","name":"Fahim Imam"},"description":"Cell types from NIFSTD","homepage":"http://neuinfo.org/","name":"Neuroscience Information Framework (NIF) Cell Ontology","prefix":"NIFCELL","version":"v.1.10 - July 17, 2013"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NIFCELL/15/nifcell.owl"}],"description":"Cell types from NIFSTD","homepage":"http://neuinfo.org/","name":"Neuroscience Information Framework (NIF) Cell Ontology","prefix":"NIFCELL","version":"v.1.10 - July 17, 2013"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"NIF has developed a comprehensive vocabulary for annotating and searching neuroscience resources.","homepage":"https://neuinfo.org/about/nifvocabularies","keywords":["Life Science","Neurobiology","Neuroscience","cell","neuron","phenotype"],"name":"Neuroscience Information Framework Cell","prefix":"FAIRsharing.jmg2st","short_names":["NIFCELL"]},"biocontext":{"prefix":"NIF_CELL","uri_format":"http://purl.obolibrary.org/obo/NIF_CELL_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nif.dysfunction":{"prefix":"nif.dysfunction","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Fahim Imam","orcid":"0000-0003-4752-543X","email":"smtifahim@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NIF_DYSFUNCTION","obofoundry":"nif_dysfunction"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"smtifahim@gmail.com","name":"Fahim Imam","orcid":"0000-0003-4752-543X"},"domain":"health","homepage":"http://neuinfo.org/","name":"NIF Dysfunction","preferred_prefix":"NIF_DYSFUNCTION","prefix":"nif_dysfunction","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NIF_DYSFUNCTION","uri_format":"http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nif.ext":{"prefix":"nif.ext","name":"NIF Standard Ontology: External","description":"NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nifext_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"7123","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NIFEXT"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nif.grossanatomy":{"prefix":"nif.grossanatomy","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Fahim Imam","orcid":"0000-0003-4752-543X","email":"smtifahim@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NIF_GROSSANATOMY","fairsharing":"FAIRsharing.89qcm2","obofoundry":"nif_grossanatomy"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"smtifahim@gmail.com","name":"Fahim Imam","orcid":"0000-0003-4752-543X"},"domain":"anatomy and development","homepage":"http://neuinfo.org/","name":"NIF Gross Anatomy","preferred_prefix":"NIF_GROSSANATOMY","prefix":"nif_grossanatomy","status":"inactive"},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The \"Neuroscience Information Framework Gross Anatomy\" was developed as part of the NIF Standard Ontologies. It extended NeuroNames by including terms from BIRNLex, SumsDB, BrainMap.org, etc.; for multi-scale\nrepresentation of the nervous system and macroscopic anatomy. For more information, see the article \"Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach\" \nFT Imam et al, Front Genet 2012 Jun 22; 3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012 https://pubmed.ncbi.nlm.nih.gov/22737162/","homepage":"http://purl.bioontology.org/ontology/nif","keywords":["Life Science","Anatomy","Neuroscience"],"name":"Neuroscience Information Framework Gross Anatomy","prefix":"FAIRsharing.89qcm2","short_names":["NIF_GrossAnatomy"]},"biocontext":{"prefix":"NIF_GROSSANATOMY","uri_format":"http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nif.std":{"prefix":"nif.std","name":"NIF Standard Ontology","description":"NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.","pattern":"^BAMSC\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BAMSC981","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NIFSTD","bioportal":"NIFSTD","fairsharing":"FAIRsharing.vgw1m6"},"synonyms":["NIFSTD"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18975148","doi":"10.1007/s12021-008-9032-z","pmc":"PMC2743139","title":"The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience","year":2008},{"pubmed":"18975148","doi":"10.1007/s12021-008-9032-z","pmc":null,"title":"The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience","year":2008},{"pubmed":"18975148","doi":"10.1007/s12021-008-9032-z","pmc":null,"title":"The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"tgbugs@gmail.com","name":"Tom Gillespie"},"description":"NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.","homepage":"http://ontology.neuinfo.org","name":"Neuroscience Information Framework (NIF) Standard Ontology","prefix":"NIFSTD","publications":[{"url":"http://neuinfo.org/about/publications.shtm"}],"version":"3.1 - January 15, 2018"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NIFSTD/23/nifstd.owl"}],"description":"NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.","homepage":"http://ontology.neuinfo.org","name":"Neuroscience Information Framework (NIF) Standard Ontology","prefix":"NIFSTD","version":"3.0 - October 16, 2017"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"tgbugs@gmail.com","name":"Tom Gillespie","orcid":"0000-0002-7509-4801"},"description":"NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.","homepage":"https://github.com/SciCrunch/NIF-Ontology","keywords":["Neuroscience","disease","brain"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Neuroscience Information Framework Standard Ontology","prefix":"FAIRsharing.vgw1m6","publications":[{"doi":"10.1007/s12021-008-9032-z","pubmed":"18975148","title":"The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience","url":"http://doi.org/10.1007/s12021-008-9032-z","year":2008}],"short_names":["NIFSTD"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nihhesc":{"prefix":"nihhesc","name":"NIH Human Embryonic Stem Cell Registry","description":"The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)","pattern":null,"uri_format":"https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://grants.nih.gov/stem_cells/registry/current.htm","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NIHhESC-10-0083","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"NIHhESC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://grants.nih.gov/stem_cells/registry/current.htm","name":"NIH Human Embryonic Stem Cell Registry","prefix":"NIHhESC","uri_format":"https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nihreporter.project":{"prefix":"nihreporter.project","name":"NIH RePORTER","description":"RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.","pattern":"^\\d+$","uri_format":"https://reporter.nih.gov/project-details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://reporter.nih.gov/","repository":null,"contact":{"name":"NIH Reporter Helpdesk","orcid":null,"email":"report@mail.nih.gov","github":null},"contact_extras":null,"contact_group_email":"report@mail.nih.gov","contact_page":null,"owners":null,"example":"10343835","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.obo.gz","download_json":"https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bibliometrics","project"],"domain":"project","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":400,"logo":"https://files.nccih.nih.gov/nccih-nih-reporter-twitter-card-01.jpg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nist":{"prefix":"nist","name":"NIST Chemistry WebBook","description":"The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://webbook.nist.gov/chemistry/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NIST","NIST Chemistry WebBook"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":true,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nist.codata":{"prefix":"nist.codata","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nist","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1645"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a physical constant","examples":["c","h"],"homepage":"http://physics.nist.gov/cuu/Constants/index.html","name":"NIST/CODATA ID","prefix":"P1645","uri_format":"https://physics.nist.gov/cgi-bin/cuu/Value?$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nkos":{"prefix":"nkos","name":"Networked Knowledge Organization Systems/Services/Structures","description":"NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.\n\nKnowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004).","pattern":null,"uri_format":"http://w3id.org/nkos/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://w3id.org/nkos","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"alignedWith","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://nkos.dublincore.org/nkos.rdf","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlcd":{"prefix":"nlcd","name":"United States Geological Survey - National Land Cover Database","description":"A vocabulary for describing the usage of land cover (e.g., pasture, wetlands, barren, forest, water) extended from the original 16 land cover classes proposed by the [Anderson Level II classification system](https://doi.org/10.3133/pp964) in 1976","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.mrlc.gov/data/type/land-cover","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"12","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["environment","forestry"],"domain":null,"references":["https://www.mrlc.gov/data/legends/national-land-cover-database-class-legend-and-description","https://www.usgs.gov/centers/eros/science/national-land-cover-database"],"publications":null,"appears_in":["envo"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlfff":{"prefix":"nlfff","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"nlfff"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database","examples":["345201101230312003"],"extras":{"miriam_id":"00000988","namespaceEmbeddedInLui":false},"homepage":"https://nlfff.dataset.deepsolar.space/en/","name":"NLFFF Database","pattern":"^[0-9]+$","prefix":"nlfff","status":"active","uri_format":"http://database.deepsolar.space:18080/dbs/nlfff/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlm":{"prefix":"nlm","name":"National Library of Medicine Catalog","description":"The NLM Catalog provides access to NLM bibliographic data for journals, books, audiovisuals, computer software, electronic resources and other materials. Links to the library's holdings in LocatorPlus, NLM's online public access catalog, are also provided. [from homepage]","pattern":"^\\d+$","uri_format":"https://www.ncbi.nlm.nih.gov/nlmcatalog/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ncbi.nlm.nih.gov/nlmcatalog","repository":null,"contact":{"name":"NLM Customer Service","orcid":null,"email":"custserv@nlm.nih.gov","github":null},"contact_extras":null,"contact_group_email":"custserv@nlm.nih.gov","contact_page":null,"owners":null,"example":"101775319","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/nlm/nlm.owl","download_obo":"https://w3id.org/biopragmatics/resources/nlm/nlm.obo","download_json":"https://w3id.org/biopragmatics/resources/nlm/nlm.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"528","biolink":"NLMID","wikidata.entity":"Q986957"},"synonyms":null,"keywords":["journal"],"domain":"publication","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://upload.wikimedia.org/wikipedia/commons/5/52/Logo_of_U.S._National_Library_of_Medicine.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"NLMID","uri_format":"https://www.ncbi.nlm.nih.gov/nlmcatalog/?term=$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The NLM Classification covers the field of medicine and related sciences. The scheme is a system of classification intended to be used for the shelf arrangement of all library materials, regardless of format. Designed as a broad classification, it is suitable for both large and small library collections and may be adapted to handle specialized collections of any size. The NLM Classification is a system of mixed notation patterned after the Library of Congress (LC) Classification where alphabetical letters which denote broad subject categories are further subdivided by numbers. The NLM Classification utilizes schedules QS-QZ and W-WZ, permanently excluded from the LC Classification Schedules and is intended to be used with the LC schedules which supplement the NLM Classification for subjects bordering on medicine and for general reference materials. The LC schedules for Human Anatomy (QM), Microbiology (QR), and Medicine (R) are not used at all by the National Library of Medicine since they overlap the NLM Classification. The headings for the individual schedules are given in brief form (e.g., WE - Musculoskeletal System; WG - Cardiovascular System) and together they provide an outline of the subjects that constitute the NLM Classification. These headings are interpreted broadly and include the physiological system, the specialty or specialties connected with them, the regions of the body chiefly concerned and subordinate related fields. The Classification is hierarchical, and within each schedule, division by organ usually has priority. Each main schedule, as well as some sections within a schedule, begins with a group of form numbers ranging generally from 1-49 which are used to classify materials by publication type, e.g., dictionaries, atlases, laboratory manuals, etc. The main schedules QS-QZ, W-WY, and WZ (excluding WZ 220-270) are used to classify works published after 1913; the 19th century schedule is used for works published 1801-1913; and WZ 220-270 is used to provide century groupings for works published before 1801 and Americana. Geographic subdivision is provided for certain subjects in the NLM schedules by the application of Table G notations.","examples":["QU 21"],"homepage":"http://www.nlm.nih.gov/class/","name":"National Library of Medicine Classification","pattern":"^[A-Z]+ [0-9]+(.[0-9](.[A-Z0-9]+)?)?$","prefix":"528","short_names":["NLM"],"uri_format":"https://www.nlm.nih.gov/class/$1","xrefs":{"wikidata":"Q986957"}},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlm.publisher":{"prefix":"nlm.publisher","name":"NLM Publisher Codes","description":"Publisher short codes appearin in the NLM Catalog.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ftp.ncbi.nlm.nih.gov/pubmed/xmlprovidernames.txt","repository":null,"contact":{"name":"NLM Customer Service","orcid":null,"email":"custserv@nlm.nih.gov","github":null},"contact_extras":null,"contact_group_email":"custserv@nlm.nih.gov","contact_page":null,"owners":null,"example":"wiley","example_extras":null,"example_decoys":null,"license":"public domain","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.owl","download_obo":"https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.obo","download_json":"https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bibliometrics","publisher"],"domain":"organization","references":null,"publications":null,"appears_in":["nlm"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1318,"logo":"https://upload.wikimedia.org/wikipedia/commons/5/52/Logo_of_U.S._National_Library_of_Medicine.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.anat":{"prefix":"nlx.anat","name":"NeuroLex Anatomy","description":"NLXANAT covers anatomy terms. Almost all terms are also in Uberon.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scicrunch.org/scicrunch/interlex/dashboard","repository":null,"contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"090201","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["anatomy"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.br":{"prefix":"nlx.br","name":"NIF Standard Ontology: Brain Regions","description":"NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_br_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"145","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXBR"],"keywords":["anatomy","brain regions","neuroscience"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.cell":{"prefix":"nlx.cell","name":"NIF Standard Ontology: Cell Types","description":"NLXCELL conatins cell types with a focus on neuron types.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"091005","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXCELL"],"keywords":["cell lines","cell types","cells","neuroscience"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.chem":{"prefix":"nlx.chem","name":"NIF Standard Ontology: Chemical","description":"NLXCHEM covers chemicals. Most classes are also in ChEBI.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"090801","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXCHEM"],"keywords":["chemistry"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.dys":{"prefix":"nlx.dys","name":"NeuroLex Dysfunction","description":"NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scicrunch.org/scicrunch/interlex/dashboard","repository":null,"contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"20090602","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["disease","disorders","phenotypes"],"domain":null,"references":null,"publications":null,"appears_in":["mondo"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.func":{"prefix":"nlx.func","name":"NIF Standard Ontology: Cognitive Function","description":"NLXFUNC covers terms for cognitive function.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_func_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"90801","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXFUNC"],"keywords":["neuroscience"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.inv":{"prefix":"nlx.inv","name":"NIF Standard Ontology: Investigations","description":"NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"90901","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXINV"],"keywords":["data analysis","funding agencies"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.mol":{"prefix":"nlx.mol","name":"NIF Standard Ontology: Molecules","description":"NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"90806","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXMOL"],"keywords":["biology","chemistry","neuroscience","proteins"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.oen":{"prefix":"nlx.oen","name":"NIF Standard Ontology: OEN Terms in Neurolex","description":"NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/oen_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001000","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXOEN"],"keywords":["neuroscience"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.org":{"prefix":"nlx.org","name":"NIF Standard Ontology: Organisms","description":"NLXORG covers organisms.","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"090701","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXORG"],"keywords":["taxonomy"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.qual":{"prefix":"nlx.qual","name":"NIF Standard Ontology: Qualities","description":"NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"100810","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXQUAL"],"keywords":["dispositions","qualities"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.res":{"prefix":"nlx.res","name":"NIF Standard Ontology: Digital Resources","description":"NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_res_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"090924","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":null,"part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["NLXRES"],"keywords":["software and information systems"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nlx.sub":{"prefix":"nlx.sub","name":"NIF Standard Ontology: Subcellular Entities","description":"NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).","pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/SciCrunch/NIF-Ontology","repository":"https://github.com/SciCrunch/NIF-Ontology","contact":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"090803","example_extras":null,"example_decoys":null,"license":"CC BY-4.0","version":null,"part_of":"neurolex","part_of_database":"nif","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"go":"NIF_Subcellular"},"synonyms":["NLXSUB","nif_subcellular"],"keywords":["cellular components"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Tom Gillespie","orcid":"0000-0002-7509-4801","email":"tgbugs@gmail.com","github":"tgbugs"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.neurolex.org/wiki","name":"Neuroscience Information Framework standard ontology, subcellular hierarchy","prefix":"NIF_Subcellular","uri_format":"http://www.neurolex.org/wiki/$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmdc":{"prefix":"nmdc","name":"National Microbiome Data Collaborative","description":"An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.","pattern":"^.{2,}$","uri_format":"https://w3id.org/nmdc/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/nmdc/$1","providers":[{"code":"web","name":"NMDC Web Page","description":"Direct link","homepage":"https://drs.microbiomedata.org","uri_format":"https://drs.microbiomedata.org/objects/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://microbiomedata.org/","repository":null,"contact":{"name":"Donny Winston","orcid":"0000-0002-8424-0604","email":"donny@polyneme.xyz","github":"dwinston"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"y3ax-8bq3-60","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"nmdc","wikidata.entity":"Q107698738"},"synonyms":null,"keywords":["microbiome"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/982"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Donny Winston","orcid":"0000-0002-8424-0604","email":"donny@polyneme.xyz","github":"dwinston"},"contributor_extras":[{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":130,"logo":null,"miriam":{"description":"The National Microbiome Data Collaborative (NMDC) is an initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.","examples":["6m4e-1vbv-03"],"extras":{"miriam_id":"00000837","namespaceEmbeddedInLui":false},"homepage":"http://www.lbl.gov/","name":"National Microbiome Data Collaborative","pattern":"^[A-Za-z0-9._~\\-\\:]+$","prefix":"nmdc","status":"active","uri_format":"https://w3id.org/nmdc/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmpdr":{"prefix":"nmpdr","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"ncbi":"NMPDR","prefixcommons":"nmpdr"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.","examples":["fig|360108.3.peg.195"],"homepage":"http://www.nmpdr.org","keywords":["genome"],"name":"National Microbial Pathogen Data Resource","pattern":"^[A-Z,0-9]+$","prefix":"nmpdr","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nmpdr:$1"}],"uri_format":"http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["fig|306254.1.peg.183"],"homepage":"http://www.nmpdr.org","name":"National Microbial Pathogen Data Resource","prefix":"NMPDR"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmr":{"prefix":"nmr","name":null,"description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/nmrML/nmrCV","contact":{"name":"Daniel Schober","orcid":"0000-0001-8014-6648","email":"schober@imbi.uni-freiburg.de","github":"DSchober"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://nmrml.org/cv/stable/nmrCV.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NMR","biocontext":"NMR","bioportal":"NMR","fairsharing":"FAIRsharing.xm7tkj","miriam":"nmr","n2t":"nmr","obofoundry":"nmr","ols":"nmrcv","prefixcommons":"nmr","tib":"nmrcv","wikidata.entity":"Q114677901"},"synonyms":["nmrcv"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.","examples":["1000003"],"extras":{"miriam_id":"00000639","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/nmrcv","name":"Nuclear Magnetic Resonance Controlled Vocabulary","pattern":"^NMR:\\d+$","prefix":"nmr","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/nmrcv/terms?curie=NMR:$1"},"n2t":{"description":"nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.","examples":["1000003"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols/ontologies/nmrcv","name":"NMR through OLS","pattern":"^NMR:\\d+$","prefix":"nmr","uri_format":"https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1"},"prefixcommons":{"description":"Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation.","examples":["NMR_400113"],"homepage":"http://msi-ontology.sourceforge.net/","keywords":["owl","nmr"],"name":"NMR-instrument specific component of metabolomics investigations","pattern":"^NMR_\\d+$","prefix":"nmr","prefix_synonyms":["msi.nmr"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nmr:$1"}],"uri_format_rdf":"http://msi-ontology.sourceforge.net/ontology/NMR.owl#$1","xrefs":{"bioportal":"1033"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/nmr.owl"}],"contact":{"email":"schober@imbi.uni-freiburg.de","name":"Schober Daniel"},"description":"Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation.","domain":"investigations","homepage":"http://msi-ontology.sourceforge.net/","name":"NMR-instrument specific component of metabolomics investigations","preferred_prefix":"NMR","prefix":"nmr","status":"inactive"},"bioportal":{"contact":{"email":"dschober@ipb-halle.de","name":"Daniel Schober"},"description":"This is the new msi-sanctioned nmr CV, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors.","homepage":"http://nmrml.org/cv/","name":"NMR-Controlled Vocabulary","prefix":"NMR","version":"1.1.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://nmrml.org/cv/stable/nmrCV.owl"}],"description":"This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model.","extras":{"version.iri":"http://nmrml.org/cv/v1.1.0/nmrCV.owl"},"homepage":"http://nmrml.org/cv/","name":"nuclear magnetic resonance CV","prefix":"nmrcv","uri_format":"http://nmrML.org/nmrCV#NMR$1","version":"1.1.0"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NMR/12/nmr.owl"}],"description":"This is the new msi-sanctioned nmr CV, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors.","homepage":"http://nmrml.org/cv/","name":"NMR-Controlled Vocabulary","prefix":"NMR","version":"1.1.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"nmrCV is a MSI-sanctioned NMR controlled vocabulary, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with standardized meaningful data descriptors. This CV is the successor of the (now deprecated) 'NMR-instrument specific component of metabolomics investigations' CV of 2006. This standard is currently financed via the PhenoMeNal EU project. It is a simple taxonomy build according to the same design principles as its role model artefact, the Mass Spec CV of PSI.","homepage":"http://nmrml.org/cv/","keywords":["Metabolomics","Chemistry","Structure","Chemical structure image","metabolite","nuclear magnetic resonance spectroscopy","chemical screen","assay"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Nuclear Magnetic Resonance Controlled Vocabulary","prefix":"FAIRsharing.xm7tkj","publications":[{"doi":"10.1038/nbt0807-846b","pubmed":"17687353","title":"The metabolomics standards initiative","url":"http://doi.org/10.1038/nbt0807-846b","year":2007},{"doi":"10.1021/acs.analchem.7b02795","pubmed":"29035042","title":"nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data","url":"http://doi.org/10.1021/acs.analchem.7b02795","year":2017}],"repository":"https://github.com/nmrML/nmrCV","short_names":["nmrCV"]},"biocontext":{"prefix":"NMR","uri_format":"http://purl.obolibrary.org/obo/NMR_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://nmrml.org/cv/v1.1.0/nmrCV.owl"}],"description":"This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model.\n","extras":{"version.iri":"http://nmrml.org/cv/v1.1.0/nmrCV.owl"},"homepage":"http://nmrml.org/cv/","keywords":["NFDI4CHEM","chemistry","chemical and environmental engineering"],"name":"nuclear magnetic resonance CV","prefix":"nmrcv","tracker":"https://github.com/nmrML/nmrML/issues","uri_format":"http://nmrML.org/nmrCV#$1"}},"nmrshiftdb2":{"prefix":"nmrshiftdb2","name":"NMRShiftDB structure","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"nmrshiftdb2","re3data":"r3d100010316","wikidata":"P9405"},"synonyms":["NMRShiftDB"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25998807","doi":"10.1002/mrc.4263","pmc":null,"title":"Facilitating quality control for spectra assignments of small organic molecules: nmrshiftdb2--a free in-house NMR database with integrated LIMS for academic service laboratories","year":2015},{"pubmed":"15464159","doi":"10.1016/j.phytochem.2004.08.027","pmc":null,"title":"NMRShiftDB -- compound identification and structure elucidation support through a free community-built web database","year":2004},{"pubmed":"14632418","doi":"10.1021/ci0341363","pmc":null,"title":"NMRShiftDB-constructing a free chemical information system with open-source components","year":2003}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.","examples":["234"],"extras":{"miriam_id":"00000748","namespaceEmbeddedInLui":false},"homepage":"https://nmrshiftdb.nmr.uni-koeln.de","name":"NMR Shift Database","pattern":"^[0-9]+$","prefix":"nmrshiftdb2","status":"active","uri_format":"https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"},"n2t":null,"prefixcommons":null,"wikidata":{"description":"structure identifiers in the NMRShiftDB","examples":["20143612","20188613","20213347"],"homepage":"https://nmrshiftdb.nmr.uni-koeln.de/","name":"NMRShiftDB structure ID","pattern":"^\\d+$","prefix":"P9405","uri_format":"https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"nmrshiftdb is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. Last not least, it features peer-reviewed submission of datasets by its users. The nmrshiftdb2 software is open source, the data is published under an open content license. Please consult the documentation for more detailed information. nmrshiftdb2 is the continuation of the NMRShiftDB project with additional data and bugfixes and changes in the software.","homepage":"https://nmrshiftdb.nmr.uni-koeln.de/","license":{"name":"other"},"name":"NMRshiftDB","prefix":"r3d100010316","xrefs":{"doi":"10.17616/R3MK6H","omics":"18926"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmrxiv.compound":{"prefix":"nmrxiv.compound","name":"nmrXiv compound","description":"compounds appearing in nmrXiv that have associated spectra.","pattern":null,"uri_format":"https://nmrxiv.org/spectra?compound=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nmrxiv.org/compounds","repository":null,"contact":{"name":"Chandu Nainala","orcid":"0000-0002-2564-3243","email":null,"github":"vcnainala"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"188","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nmrxiv","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","compound"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1708,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmrxiv.project":{"prefix":"nmrxiv.project","name":"nmrXiv project","description":"A project in the nmrXiv","pattern":"^P\\d+$","uri_format":"https://nmrxiv.org/project/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nmrxiv.org/projects","repository":null,"contact":{"name":"Chandu Nainala","orcid":"0000-0002-2564-3243","email":null,"github":"vcnainala"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"P136","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nmrxiv","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["datasets","project"],"domain":"project","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1708,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nmrxiv.sample":{"prefix":"nmrxiv.sample","name":"nmrXiv sample","description":"spectra (samples) in the nmrXiv database","pattern":"^S\\d+$","uri_format":"https://nmrxiv.org/sample/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nmrxiv.org/spectra","repository":null,"contact":{"name":"Chandu Nainala","orcid":"0000-0002-2564-3243","email":null,"github":"vcnainala"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"S1295","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"nmrxiv","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["nmr","sample","spectra","spectrum"],"domain":"experiment","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1708,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"noaa.cameo":{"prefix":"noaa.cameo","name":null,"description":"CAMEO Chemicals is a database of hazardous chemical datasheets that emergency responders and planners can use to get response recommendations and predict hazards—such as explosions or toxic fumes.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"noaa","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P11931","wikidata.entity":"Q125807660"},"synonyms":null,"keywords":null,"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"chemical in the database supplied by National Oceanic and Atmospheric Administration","examples":["19757","667","8754"],"homepage":"https://cameochemicals.noaa.gov","name":"CAMEO Chemicals ID","pattern":"^\\d*$","prefix":"P11931","uri_format":"https://cameochemicals.noaa.gov/chemical/$1","xrefs":{"wikidata":"Q125807660"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"noaa.species":{"prefix":"noaa.species","name":"NOAA Fisheries Species Directory","description":"Identifier for a species on the noaa fisheries website","pattern":"^[a-z]+(\\-[a-z]+)*$","uri_format":"https://www.fisheries.noaa.gov/species/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.fisheries.noaa.gov/species-directory","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"long-finned-pilot-whale","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"noaa","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P6049"},"synonyms":["noaa"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Meghan Balk","orcid":"0000-0003-2699-3066","email":"meghan.balk@gmail.com","github":"megbalk"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":456,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a species on the NOAA Fisheries website","examples":["alaska-snow-crab","blue-mussel","long-finned-pilot-whale"],"homepage":"https://www.fisheries.noaa.gov/species-directory","name":"NOAA Fisheries Species Directory ID","pattern":"^[a-z]+(\\-[a-z]+)*$","prefix":"P6049","uri_format":"https://www.fisheries.noaa.gov/species/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nomen":{"prefix":"nomen","name":"A nomenclatural ontology for biological names","description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/NOMEN_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000295","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NOMEN","bioportal":"NOMEN","obofoundry":"nomen","ols":"nomen","ontobee":"NOMEN","wikidata.entity":"Q81661723"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/nomen.owl"}],"contact":{"email":"diapriid@gmail.com","github":"mjy","name":"Matt Yoder","orcid":"0000-0002-5640-5491"},"description":"NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.","domain":"information","homepage":"https://github.com/SpeciesFileGroup/nomen","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"NOMEN - A nomenclatural ontology for biological names","preferred_prefix":"NOMEN","prefix":"nomen","repository":"https://github.com/SpeciesFileGroup/nomen","status":"active"},"bioportal":{"contact":{"email":"diapriid@gmail.com","name":"Matt Yoder"},"description":"NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.","homepage":"https://github.com/SpeciesFileGroup/nomen","name":"NOMEN - A nomenclatural ontology for biological names","prefix":"NOMEN"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/nomen.owl"}],"description":"NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.","homepage":"https://github.com/SpeciesFileGroup/nomen","name":"NOMEN - A nomenclatural ontology for biological names","prefix":"nomen","tracker":"https://github.com/SpeciesFileGroup/nomen/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NOMEN/11/nomen.owl"}],"description":"NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.","homepage":"https://github.com/SpeciesFileGroup/nomen","name":"NOMEN - A nomenclatural ontology for biological names","prefix":"NOMEN"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"NOMEN - A nomenclatural ontology for biological names","prefix":"NOMEN"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"noncodev3":{"prefix":"noncodev3","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Yi Zhao","orcid":"0000-0001-6049-8347","email":"biozy@ict.ac.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NONCODEV3","miriam":"noncodev3","n2t":"noncodev3","prefixcommons":"noncode"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22135294","doi":"10.1093/nar/gkr1175","pmc":"PMC3245065","title":"NONCODE v3.0: integrative annotation of long noncoding RNAs","year":2011},{"pubmed":"22135294","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22135294","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.","examples":["377550"],"extras":{"miriam_id":"00000248","namespaceEmbeddedInLui":false},"homepage":"http://www.noncode.org/","name":"NONCODE v3","pattern":"^\\d+$","prefix":"noncodev3","status":"deprecated","uri_format":"http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"},"n2t":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.","examples":["377550"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.noncode.org/","name":"NONCODE at Chinese Academy of Sciences","pattern":"^\\d+$","prefix":"noncodev3","uri_format":"http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"},"prefixcommons":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics.","examples":["377550"],"homepage":"http://www.noncode.org/","keywords":["expression","nucleotide"],"name":"NONCODE","pattern":"^\\d+$","prefix":"noncode","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/noncode:$1"}],"publications":[{"pubmed":"22135294"}],"uri_format":"http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NONCODEV3","uri_format":"http://identifiers.org/noncodev3/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"noncodev4.gene":{"prefix":"noncodev4.gene","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NONCODEV4.GENE","miriam":"noncodev4.gene","n2t":"noncodev4.gene"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.","examples":["NONHSAG00001"],"extras":{"miriam_id":"00000480","namespaceEmbeddedInLui":false},"homepage":"http://www.bioinfo.org/NONCODEv4/","name":"NONCODE v4 Gene","pattern":"^NONHSAG\\d{5}$","prefix":"noncodev4.gene","status":"deprecated","uri_format":"http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"},"n2t":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.","examples":["NONHSAG00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.bioinfo.org/NONCODEv4/","name":"NONCODE v4 Gene at Chinese Academy of Sciences","pattern":"^NONHSAG\\d{5}$","prefix":"noncodev4.gene","uri_format":"http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NONCODEV4.GENE","uri_format":"http://identifiers.org/noncodev4.gene/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"noncodev4.rna":{"prefix":"noncodev4.rna","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NONCODEV4.RNA","miriam":"noncodev4.rna","n2t":"noncodev4.rna"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.","examples":["NONHSAT000001"],"extras":{"miriam_id":"00000481","namespaceEmbeddedInLui":false},"homepage":"http://www.bioinfo.org/NONCODEv4/","name":"NONCODE v4 Transcript","pattern":"^NONHSAT\\d{6}$","prefix":"noncodev4.rna","status":"deprecated","uri_format":"http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"},"n2t":{"description":"NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.","examples":["NONHSAT000001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.bioinfo.org/NONCODEv4/","name":"NONCODE v4 Transcript at Chinese Academy of Sciences","pattern":"^NONHSAT\\d{6}$","prefix":"noncodev4.rna","uri_format":"http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NONCODEV4.RNA","uri_format":"http://identifiers.org/noncodev4.rna/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nord":{"prefix":"nord","name":"National Organization for Rare Disorders","description":"A website containing information about rare diseases, powered by Wordpress.","pattern":"^\\d+$","uri_format":"https://rarediseases.org/?p=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://rarediseases.org","repository":null,"contact":{"name":"Sean Roberts","orcid":null,"email":"sean@skm.digital","github":"skm16"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1693","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/monarch-initiative/mondo/issues/8588"],"publications":null,"appears_in":["mondo"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1375,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"norine":{"prefix":"norine","name":"Nonribosomal Peptides Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Maude Pupin","orcid":"0000-0003-3197-0715","email":"maude.pupin@univ-lille.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NORINE","miriam":"norine","n2t":"norine","prefixcommons":"norine"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31691799","doi":"10.1093/nar/gkz1000","pmc":"PMC7145658","title":"Norine: update of the nonribosomal peptide resource","year":2020},{"pubmed":"17913739","doi":"10.1093/nar/gkm792","pmc":"PMC2238963","title":"NORINE: a database of nonribosomal peptides","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.","examples":["NOR00681"],"extras":{"miriam_id":"00000498","namespaceEmbeddedInLui":false},"homepage":"https://bioinfo.cristal.univ-lille.fr/norine/","name":"NORINE","pattern":"^NOR\\d+$","prefix":"norine","status":"active","uri_format":"https://bioinfo.cristal.univ-lille.fr/norine/result.jsp?ID=$1"},"n2t":{"description":"Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.","examples":["NOR00681"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://bioinfo.lifl.fr/norine/","name":"NORINE at Computer Science Laboratory of Lille","pattern":"^NOR\\d+$","prefix":"norine","uri_format":"http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"},"prefixcommons":{"description":"Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.","examples":["NOR00681"],"homepage":"http://bioinfo.lifl.fr/norine/","keywords":["protein"],"name":"Non-Ribosomal Peptides Database","pattern":"^NOR\\d+$","prefix":"norine","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/norine:$1"}],"uri_format":"http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NORINE","uri_format":"http://identifiers.org/norine/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"novus":{"prefix":"novus","name":"Novus Biologicals","description":"A vendor of antibodies and other biologics","pattern":null,"uri_format":"https://www.novusbio.com/products/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.novusbio.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"nb100-56351","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"npass":{"prefix":"npass","name":"Natural Product Activity and Species Source Database","description":"Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data.","pattern":"^NPC\\d+$","uri_format":"https://bidd.group/NPASS/compound.php?compoundID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://bidd.group/NPASS/","repository":null,"contact":{"name":"Yu Zong Chen","orcid":"0000-0002-5473-8022","email":"chenyuzong@sz.tsinghua.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NPC139585","example_extras":null,"example_decoys":null,"license":"CC-BY-NC","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/npass/npass.owl","download_obo":"https://w3id.org/biopragmatics/resources/npass/npass.obo","download_json":"https://w3id.org/biopragmatics/resources/npass/npass.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","compound","natural product","small molecule"],"domain":"chemical","references":null,"publications":[{"pubmed":"36624664","doi":"10.1093/nar/gkac1069","pmc":"PMC9825494","title":"NPASS database update 2023: quantitative natural product activity and species source database for biomedical research","year":2023},{"pubmed":"29106619","doi":"10.1093/nar/gkx1026","pmc":"PMC5753227","title":"NPASS: natural product activity and species source database for natural product research, discovery and tool development","year":2018}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource does not have an explicit license. The [lotus database](https://github.com/lotusnprod/lotus-processor/blob/main/docs/licenses/npass.md) inferred that the CC-BY-NC license from the paper might be good enough for applying to the data itself.","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://bidd.group/NPASS/images/logo.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"npatlas":{"prefix":"npatlas","name":"The Natural Products Atlas","description":"Identifiers for microbially derived natural products that contains compound structures, producing organism taxonomy, biosynthetic and chemical properties.","pattern":"^NPA\\d{6}$","uri_format":"https://www.npatlas.org/explore/compounds/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.npatlas.org","repository":null,"contact":{"name":"Roger Linington","orcid":"0000-0003-1818-4971","email":"rliningt@sfu.ca","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NPA000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39588755","doi":"10.1093/nar/gkae1093","pmc":null,"title":"The Natural Products Atlas 3.0: extending the database of microbially derived natural products","year":2024},{"pubmed":"34718710","doi":"10.1093/nar/gkab941","pmc":"PMC8728154","title":"The Natural Products Atlas 2.0: a database of microbially-derived natural products","year":2021},{"pubmed":"31807684","doi":"10.1021/acscentsci.9b00806","pmc":"PMC6891855","title":"The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1295,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"npm":{"prefix":"npm","name":"Node Package Manager","description":"A repository of software packages written in Javascript, TypeScript, and related.","pattern":null,"uri_format":"https://www.npmjs.com/package/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.npmjs.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"@biopragmatics/curies","example_extras":["ansi-pad"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"npo":{"prefix":"npo","name":"NanoParticle Ontology","description":"An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.","pattern":"^\\d+$","uri_format":"http://purl.bioontology.org/ontology/npo#NPO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioportal.bioontology.org/ontologies/NPO","repository":"https://github.com/sobolevnrm/npo","contact":{"name":"Nathan Baker","orcid":"0000-0002-5892-6506","email":"nathan.baker@pnnl.gov","github":"sobolevnrm"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1731","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"NPO","bioportal":"NPO","fairsharing":"FAIRsharing.vy0p71"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20211274","doi":"10.1016/j.jbi.2010.03.001","pmc":"PMC3042056","title":"NanoParticle Ontology for cancer nanotechnology research","year":2010},{"pubmed":"20211274","doi":"10.1016/j.jbi.2010.03.001","pmc":null,"title":"NanoParticle Ontology for cancer nanotechnology research","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"nathan.baker@pnl.gov","name":"Nathan Baker"},"description":"An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.","homepage":"http://www.nano-ontology.org","name":"NanoParticle Ontology","prefix":"NPO","publications":[{"url":"http://www.nano-ontology.org"}],"version":"2011-12-08 (yyyy-mm-dd)"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/NPO/31/npo.owl"}],"description":"An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.","homepage":"http://www.nano-ontology.org","name":"NanoParticle Ontology","prefix":"NPO","version":"2011-12-08 (yyyy-mm-dd)"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"nathan.baker@pnl.gov","name":"Nathan Baker","orcid":"0000-0002-5892-6506"},"description":"An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.","homepage":"http://www.nano-ontology.org","keywords":["Life Science","molecular entity","nanoparticle","structure"],"name":"NanoParticle Ontology","prefix":"FAIRsharing.vy0p71","publications":[{"doi":"10.1016/j.jbi.2010.03.001","pubmed":"20211274","title":"NanoParticle Ontology for cancer nanotechnology research","url":"http://doi.org/10.1016/j.jbi.2010.03.001","year":2010}],"short_names":["NPO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nrfc":{"prefix":"nrfc","name":"National Repository of Fish Cell Lines","description":"The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)","pattern":"^NRFC\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mail.nbfgr.res.in/nrfc/index.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NRFC051","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"NRFC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://mail.nbfgr.res.in/nrfc/","name":"National Repository of Fish Cell Line","prefix":"NRFC"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nsc":{"prefix":"nsc","name":"USA National Service Center Number","description":null,"pattern":"^\\d+$","uri_format":"https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://wiki.nci.nih.gov/display/NCIDTPdata/Chemical+Data","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"27223","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cheminf":"000565"},"synonyms":null,"keywords":null,"domain":null,"references":["https://pubchem.ncbi.nlm.nih.gov/source/DTP/NCI"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":{"description":"Identifier used by the Cancer Chemotherapy National Service Center.","name":"National Service Center number","prefix":"000565"},"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nsf.award":{"prefix":"nsf.award","name":"National Science Foundation Award","description":"Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research.","pattern":"^\\d+$","uri_format":"https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.nsf.gov/awards/about.jsp","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1458400","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nsrrc":{"prefix":"nsrrc","name":null,"description":"Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]","pattern":"^\\d+$","uri_format":"https://nsrrc.missouri.edu/nsrrc$1info/","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0005","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"rrid":"NSRRC"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"http://www.nsrrc.missouri.edu/","keywords":["biomaterial manufacture","breeding","consulting","cryopreservation","fetal fibroblast","fetus","fibroblast","genetically modified pig","genetics","genome","genotyping","health monitoring","live animal","phenotyping","pig","reproduction","tissue"],"name":"National Swine Resource and Research Center","prefix":"NSRRC","xrefs":{"scr":"006855"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nucc.characteristic":{"prefix":"nucc.characteristic","name":"National Uniform Claim Committee Characteristic","description":"The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan.","pattern":"^\\d(\\d|\\w)$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://nucc.org/index.php/code-sets-mainmenu-41/provider-characteristics-mainmenu-39","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2A","example_extras":["11","10"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nucc.taxonomy":{"prefix":"nucc.taxonomy","name":"National Uniform Claim Committee Taxonomy","description":"The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards.","pattern":"^\\d{3}\\w(\\w|\\d_)\\d{4}X$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://taxonomy.nucc.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"207LH0002X","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://www.nucc.org/images/stories/CSV/nucc_taxonomy_221.csv","https://www.nucc.org"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nucleardb":{"prefix":"nucleardb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Gert Vriend","orcid":"0000-0002-1067-7053","email":"vriend@cmbi.ru.nl","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"NUCLEARBD","integbio":"nbdc00599","miriam":"nuclearbd","n2t":"nuclearbd","prefixcommons":"nucleardb"},"synonyms":["nuclearbd"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22064856","doi":"10.1093/nar/gkr960","pmc":"PMC3245090","title":"NucleaRDB: information system for nuclear receptors","year":2011},{"pubmed":"11125133","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22064856","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"11125133","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22064856","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Note that the typo from MIRIAM has spread to several other sources","contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.","examples":["prgr_human"],"extras":{"miriam_id":"00000356","namespaceEmbeddedInLui":false},"homepage":"http://www.receptors.org/nucleardb/","name":"NucleaRDB","pattern":"^\\w+\\_\\w+$","prefix":"nuclearbd","status":"active","uri_format":"http://www.receptors.org/nucleardb/proteins/$1"},"n2t":{"description":"NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.","examples":["prgr_human"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.receptors.org/nucleardb/","name":"NucleaRDB at Radboud University Nijmegen Medical Centre","pattern":"^\\w+\\_\\w+$","prefix":"nuclearbd","uri_format":"http://www.receptors.org/nucleardb/proteins/$1"},"prefixcommons":{"description":"The NucleaRDB is a part of a project devoted to build Molecular Class-Specific Information Systems (MCSIS) to provide, disseminate and harvest heterogeneous data. The NucleaRDB was built using the software developed for the GPCRDB.","examples":["prgr_human"],"homepage":"http://www.receptors.org/NR/","keywords":["classification"],"name":"NucleaRDB: An Information System for Nuclear Receptors","pattern":"^\\w+\\_\\w+$","prefix":"nucleardb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/nucleardb:$1"}],"publications":[{"pubmed":"22064856"}],"uri_format":"http://www.receptors.org/NR/seq/DR/$1.html"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"NUCLEARBD","uri_format":"http://identifiers.org/nuclearbd/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"NucleaRDB is a database of nuclear hormone receptors. The database contains gene and protein sequence, mutation, and ligand binding information. Users can search or browse receptors by family or structure. BLAST search and an alignment builidng tool are also available.","homepage":"http://www.receptors.org/nucleardb/","keywords":["Protein","Sequence"],"name":"information system for Nuclear Receptors","prefix":"nbdc00599","publications":[{"pubmed":"11125133"}],"short_names":["NucleaRDB"],"status":"active","xrefs":{"fairsharing":"biodbcore-000077"}},"pathguide":null,"tib":null},"nucleotide":{"prefix":"nucleotide","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc00600","miriam":"nucleotide"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":"insdc","preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.","examples":["880798137"],"extras":{"miriam_id":"00000882","namespaceEmbeddedInLui":false},"homepage":"https://www.ncbi.nlm.nih.gov/","name":"Nucleotide","pattern":"^[a-zA-Z0-9_\\.]+$","prefix":"nucleotide","status":"active","uri_format":"https://www.ncbi.nlm.nih.gov/nuccore/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"Nucleotide is a database of nucleic acid sequences. The database contains sequence entities from a variety of sources covering hundreds of organisms. The major resources GenBank and RefSeq repositories are both available through Nucleotide. Users can submit nucleotide sequences and data is available for download.","homepage":"http://www.ncbi.nlm.nih.gov/nuccore","keywords":["Genome/Gene","cDNA/EST","Genetic variation","Sequence","Repository"],"name":"Nucleotide","prefix":"nbdc00600","status":"active"},"pathguide":null,"tib":null},"nvs":{"prefix":"nvs","name":"NERC Vocabulary Server","description":"SKOS concept collections held in the NERC Vocabulary Server. A concept collection is useful where a group of concepts shares something in common, and it is convenient to group them under a common label. In the NVS, concept collections are synonymous with controlled vocabularies or code lists. Each collection is associated with its governance body. An external website link is displayed when applicable.","pattern":null,"uri_format":"https://vocab.nerc.ac.uk/collection/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://vocab.nerc.ac.uk/collection/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"P06","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nxr":{"prefix":"nxr","name":null,"description":"National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]","pattern":"^\\d+$","uri_format":"https://scicrunch.org/resolver/RRID:NXR_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0024","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"rrid":"NXR"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"http://www.mbl.edu/xenopus/","keywords":["Xenopus","laevis","tropicalis"],"name":"National Xenopus Resource","prefix":"NXR","xrefs":{"scr":"013731"}},"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"nztcs":{"prefix":"nztcs","name":"New Zealand Threat Classification System","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P9889"},"synonyms":null,"keywords":["taxon","taxonomy"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1083"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Sumir Pandit","orcid":"0000-0002-1216-4761","email":"sumirp77@gmail.com","github":"SumirHPandit"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for species classified under the New Zealand Threat Classification System","examples":["11061","11974","13104","26916","3004"],"homepage":"https://nztcs.org.nz/","name":"NZTCS ID","pattern":"^[1-9]\\d{2,6}$","prefix":"P9889","uri_format":"https://nztcs.org.nz/nztcs-species/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"oa":{"prefix":"oa","name":"Web Annotation Ontology","description":"The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.","pattern":null,"uri_format":"http://www.w3.org/ns/oa#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.w3.org/ns/oa","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"sourceDateStart","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"OA","biocontext":"oa","bioportal":"OA","lov":"oa","zazuko":"oa"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"oa","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"description":"The Web Annotation Data Model specification describes a structured model and format to enable annotations to be shared and reused across different hardware and software platforms. Annotations are typically used to convey information about a resource or associations between resources. Simple examples include a comment or tag on a single web page or image, or a blog post about a news article.","homepage":"https://www.w3.org/TR/annotation-model/","name":"Web Annotation Ontology","prefix":"OA","version":"2016-11-12T21:28:11Z"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/OA/4/oa.owl"}],"description":"The Web Annotation Data Model specification describes a structured model and format to enable annotations to be shared and reused across different hardware and software platforms. Annotations are typically used to convey information about a resource or associations between resources. Simple examples include a comment or tag on a single web page or image, or a blog post about a news article.","homepage":"https://www.w3.org/TR/annotation-model/","name":"Web Annotation Ontology","prefix":"OA","version":"2016-11-12T21:28:11Z"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"oa","uri_format":"http://www.w3.org/ns/oa#$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The Open Annotation Core Data Model specifies an interoperable framework for creating associations between related resources, annotations, using a methodology that conforms to the Architecture of the World Wide Web. This ontology is a non-normative OWL formalization of the textual OA specification at http://www.openannotation.org/spec/core/20130208/index.html","homepage":"http://www.w3.org/ns/oa#","keywords":["Quality"],"name":"Open Annotation Data Model","prefix":"oa","uri_format":"http://www.w3.org/ns/oa#$1"},"zazuko":{"prefix":"oa","uri_format":"http://www.w3.org/ns/oa#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"oae":{"prefix":"oae","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/OAE_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0002959","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"OAE","biocontext":"OAE","bioportal":"OAE","fairsharing":"FAIRsharing.tw4q8x","obofoundry":"oae","ols":"oae","ontobee":"OAE","prefixcommons":"oae","wikidata.entity":"Q81661725"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25093068","doi":"10.1186/2041-1480-5-29","pmc":"PMC4120740","title":"OAE: The Ontology of Adverse Events","year":2014}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Ontology of Adverse Events (OAE) is a biomedical ontology in the domain of adverse events.","examples":["complete_AE_recovery"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/OAE#$1"]},"homepage":"http://www.oae-ontology.org/","keywords":["obo"],"name":"Ontology of Adverse Events (OAE)","prefix":"oae","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/oae:$1"}],"xrefs":{"bioportal":"1489"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oae.owl"}],"contact":{"email":"yongqunh@med.umich.edu","github":"yongqunh","name":"Yongqunh He","orcid":"0000-0001-9189-9661"},"description":"A biomedical ontology in the domain of adverse events","domain":"health","homepage":"https://github.com/OAE-ontology/OAE/","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Ontology of Adverse Events","preferred_prefix":"OAE","prefix":"oae","repository":"https://github.com/OAE-ontology/OAE","status":"active"},"bioportal":{"contact":{"email":"yongqunh@med.umich.edu","name":"Yongqun \"Oliver\" He"},"description":"The Ontology of Adverse Events (OAE) is a community-based biomedical ontology in the domain of adverse events. OAE is developed to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. Its development follows the OBO Foundry principles.","homepage":"http://www.oae-ontology.org/","name":"Ontology of Adverse Events","prefix":"OAE","publications":[{"pubmed":"25093068"}],"version":"1.2.47"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oae.owl"}],"description":"The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.","homepage":"https://github.com/OAE-ontology/OAE/","name":"OAE: Ontology of Adverse Events","prefix":"oae","tracker":"https://github.com/OAE-ontology/OAE/issues","version":"1.2.47"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/OAE/178/oae.owl"}],"description":"A biomedical ontology in the domain of adverse events","homepage":"https://github.com/OAE-ontology/OAE/","name":"Ontology of Adverse Events","prefix":"OAE"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Ontology of Adverse Events","prefix":"OAE"},"cheminf":null,"fairsharing":{"contact":{"email":"yongqunh@med.umich.edu","name":"Yongqun \"Oliver\" He","orcid":"0000-0001-9189-9661"},"description":"The Ontology of Adverse Events (OAE) is a community-driven ontology that is developed to standardize and integrate data on biomedical adverse events (e.g., vaccine and drug adverse events) and support computer-assisted reasoning. As a result of a medical intervention, events may occur which lie outside the intended consequences of the intervention. Some of these events are adverse events, in the sense that they are pathological bodily processes. For many such adverse events it is unclear whether they are causal consequences of the medical intervention which preceded them, since adverse events may also occur due to other reasons (for example a natural viral infection). OAE was created to represent the whole process from initial medical intervention to subsequent outcomes.","homepage":"https://github.com/oae-ontology","keywords":["Biomedical Science","drug","Adverse Reaction","vaccine"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Ontology of Adverse Events","prefix":"FAIRsharing.tw4q8x","publications":[{"doi":"10.1186/2041-1480-5-29","pubmed":"25093068","title":"OAE: The Ontology of Adverse Events","url":"http://doi.org/10.1186/2041-1480-5-29","year":2014},{"doi":"10.1371/journal.pone.0049941","title":"Ontology-Based Combinatorial Comparative Analysis of Adverse Events Associated with Killed and Live Influenza Vaccines","url":"http://dx.doi.org/10.1371/journal.pone.0049941","year":2012}],"repository":"https://github.com/OAE-ontology/OAE/issues","short_names":["OAE"]},"biocontext":{"prefix":"OAE","uri_format":"http://purl.obolibrary.org/obo/OAE_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"oarcs":{"prefix":"oarcs","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/OARCS_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000029","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"OARCS","biocontext":"OARCS","bioportal":"OARCS","fairsharing":"FAIRsharing.yqn857","obofoundry":"oarcs","ols":"oarcs","ontobee":"OARCS","wikidata.entity":"Q81661727"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"28123116","doi":"10.1093/sysbio/syw108","pmc":null,"title":"The First Organ-Based Ontology for Arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its Integration into a Novel Formalization Scheme for Morphological Descriptions","year":2017}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oarcs.owl"}],"contact":{"email":"mjyoder@illinois.edu","github":"mjy","name":"Matt Yoder","orcid":"0000-0002-5640-5491"},"description":"OArCS is an ontology describing the Arthropod ciruclatory system.","domain":"anatomy and development","homepage":"https://github.com/aszool/oarcs","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Ontology of Arthropod Circulatory Systems","preferred_prefix":"OARCS","prefix":"oarcs","repository":"https://github.com/aszool/oarcs","status":"active"},"bioportal":{"contact":{"email":"mjyoder@illinois.edu","name":"Matt Yoder"},"description":"OArCS is an ontology describing the Arthropod ciruclatory system.","homepage":"https://github.com/aszool/oarcs","name":"Ontology of Arthropod Circulatory Systems","prefix":"OARCS","version":"2019-04-18"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oarcs.owl"}],"description":"OArCS is an ontology describing the Arthropod ciruclatory system.","extras":{"version.iri":"http://purl.obolibrary.org/obo/hao/2019-04-18/hao.owl"},"homepage":"https://github.com/aszool/oarcs","name":"Ontology of Arthropod Circulatory Systems","prefix":"oarcs","tracker":"https://github.com/aszool/oarcs/issues","version":"2019-04-18"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/OARCS/3/oarcs.owl"}],"description":"OArCS is an ontology describing the Arthropod ciruclatory system.","homepage":"https://github.com/aszool/oarcs","name":"Ontology of Arthropod Circulatory Systems","prefix":"OARCS"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Ontology of Arthropod Circulatory Systems","prefix":"OARCS"},"cheminf":null,"fairsharing":{"description":"OArCS is a structural model for the description of anatomical features (morphemes) using ontologies. Its domain is the Arthropod ciruclatory system. This ontology has not been updated recently, and therefore has been marked as uncertain. Please get in touch with us if you have any information.","homepage":"https://github.com/aszool/oarcs","keywords":["Anatomy","Angiology"],"name":"Ontology of Arthropod Circulatory Systems","prefix":"FAIRsharing.yqn857","publications":[{"doi":"10.1093/sysbio/syw108","title":"The first organ-based free ontology for arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its integration into a novel formalization scheme for morphological descriptions","url":"http://dx.doi.org/10.1093/sysbio/syw108","year":2017}],"short_names":["OArCS"]},"biocontext":{"prefix":"OARCS","uri_format":"http://purl.obolibrary.org/obo/OARCS_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"oba":{"prefix":"oba","name":null,"description":null,"pattern":"^(VT)?\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/OBA_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":["VT0003769"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":"http://purl.obolibrary.org/obo/oba.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"OBA","agroportal":"OBA","biocontext":"OBA","bioportal":"OBA","fairsharing":"FAIRsharing.mp0rwf","obofoundry":"oba","ols":"oba","ontobee":"OBA","wikidata.entity":"Q81661730"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"36747660","doi":"10.1101/2023.01.26.525742","pmc":"PMC9900877","title":"The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences","year":2023},{"pubmed":"37076585","doi":"10.1007/s00335-023-09992-1","pmc":null,"title":"The Ontology of Biological Attributes (OBA)-computational traits for the life sciences","year":2023},{"pubmed":null,"doi":"10.1007/s00335-023-09992-1","pmc":null,"title":null,"year":null},{"pubmed":null,"doi":"10.1007/s00335-023-09992-1","pmc":null,"title":"The Ontology of Biological Attributes (OBA) - computational traits for the life sciences","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["fovt"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oba.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/oba.obo"}],"contact":{"email":"cjmungall@lbl.gov","github":"cmungall","name":"Chris Mungall","orcid":"0000-0002-6601-2165"},"description":"A collection of biological attributes (traits) covering all kingdoms of life.","domain":"phenotype","homepage":"https://github.com/obophenotype/bio-attribute-ontology","license":{"name":"CC0 1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"Ontology of Biological Attributes","preferred_prefix":"OBA","prefix":"oba","publications":[{"doi":"10.1007/s00335-023-09992-1","title":"The Ontology of Biological Attributes (OBA) - computational traits for the life sciences"}],"repository":"https://github.com/obophenotype/bio-attribute-ontology","status":"active"},"bioportal":{"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall"},"description":"A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.","homepage":"https://github.com/obophenotype/bio-attribute-ontology","license":{"name":"CC0-1.0"},"name":"Ontology of Biological Attributes","prefix":"OBA","version":"2025-10-29"},"ecoportal":null,"agroportal":{"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall"},"description":"The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. It is collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO., A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.","extras":{"example_uri":"http://purl.obolibrary.org/obo/OBA_0000005"},"homepage":"https://github.com/obophenotype/bio-attribute-ontology","license":{"name":"CC0-1.0"},"name":"Ontology of Biological Attributes","prefix":"OBA","publications":[{"doi":"10.1007/s00335-023-09992-1"}],"repository":"https://github.com/obophenotype/bio-attribute-ontology","version":"2025-10-29"},"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/oba.owl"}],"description":"A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.","extras":{"version.iri":"http://purl.obolibrary.org/obo/oba/releases/2025-10-29/oba.owl"},"homepage":"https://github.com/obophenotype/bio-attribute-ontology","name":"Ontology of Biological Attributes (OBA)","prefix":"oba","tracker":"https://github.com/obophenotype/bio-attribute-ontology/issues","version":"2025-10-29"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/OBA/28/oba.owl"}],"description":"A collection of biological attributes (traits) covering all kingdoms of life.","homepage":"https://github.com/obophenotype/bio-attribute-ontology","name":"Ontology of Biological Attributes","prefix":"OBA"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Ontology of Biological Attributes","prefix":"OBA"},"cheminf":null,"fairsharing":{"description":"The Ontology of Biological Attributes (OBA) is a formalised, species-independent collection of interoperable phenotypic trait categories that is intended to fulfil a data integration role. OBA is a standardised representational framework for observable attributes that are characteristics of biological entities, organisms, or parts of organisms. ","homepage":"https://github.com/obophenotype/bio-attribute-ontology","keywords":["Biology"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Ontology of Biological Attributes","prefix":"FAIRsharing.mp0rwf","short_names":["OBA"]},"biocontext":{"prefix":"OBA","uri_format":"http://purl.obolibrary.org/obo/OBA_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"oban":{"prefix":"oban","name":"Open Biomedical Annotations","description":"It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]","pattern":"^\\w+$","uri_format":"http://purl.org/oban/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/EBISPOT/OBAN","repository":"https://github.com/EBISPOT/OBAN","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"provenance","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://raw.githubusercontent.com/EBISPOT/OBAN/master/ontology/oban_core.owl","download_obo":null,"download_json":null,"download_rdf":"https://raw.githubusercontent.com/EBISPOT/OBAN/master/ontology/oban_core.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"OBAN","biolink":"OBAN"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"OBAN","uri_format":"http://purl.org/oban/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"OBAN","uri_format":"http://purl.org/oban/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"obci":{"prefix":"obci","name":"Ontology for Biomarkers of Clinical Interest","description":"The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.","pattern":"^\\d+$","uri_format":"http://purl.obolibrary.org/obo/OBCI_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/clinical-biomarkers/OBCI","repository":null,"contact":{"name":"Darren A. Natale","orcid":"0000-0001-5809-9523","email":"dan5@georgetown.edu","github":"nataled"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"000000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://proteininformationresource.org/staff/nataled/OBCI/obci.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Darren A. Natale","orcid":"0000-0001-5809-9523","email":"dan5@georgetown.edu","github":"nataled"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1174,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"obcs":{"prefix":"obcs","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/OBCS_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000121","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"OBCS","biocontext":"OBCS","bioportal":"OBCS","fairsharing":"FAIRsharing.5p12xh","miriam":"obcs","obofoundry":"obcs","ols":"obcs","ontobee":"OBCS","wikidata.entity":"Q55118544"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27627881","doi":"10.1186/s13326-016-0100-2","pmc":"PMC5024438","title":"The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis","year":2016},{"pubmed":"27627881","doi":"10.1186/s13326-016-0100-2","pmc":null,"title":"The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI)","examples":["0000086"],"extras":{"miriam_id":"00001053","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/obcs","name":" Ontology of Biological and Clinical Statistics","pattern":"^OBCS:\\d+$","prefix":"obcs","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/obcs/classes?obo_id=OBCS:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/obcs.owl"}],"contact":{"email":"jiezhen@med.umich.edu","github":"zhengj2007","name":"Jie Zheng","orcid":"0000-0002-2999-0103"},"description":"A biomedical ontology in the domain of biological and clinical statistics.","domain":"information technology","homepage":"https://github.com/obcs/obcs","license":{"name":"CC BY 4.0","url":"http://creativecommons.org/licenses/by/4.0/"},"name":"Ontology of Biological and Clinical Statistics","preferred_prefix":"OBCS","prefix":"obcs","repository":"https://github.com/obcs/obcs","status":"active"},"bioportal":{"contact":{"email":"jiezheng@upenn.edu","name":"Jie Zheng"},"description":"The Ontology of Biological and Clinical Statistics (OBCS) is a biomedical ontology in the domain of biological and clinical statistics. OBCS is primarily targeted for statistical representation in the fields in biological, biomedical, and clinical domains. OBCS uses the Basic Formal Ontology (BFO) as the upper level ontology. OBCS imports all biostatistics related terms in the Ontology for Biomedical Investigations (OBI) including all logical axioms.","homepage":"https://github.com/obcs/obcs","name":"Ontology of Biological and Clinical Statistics","prefix":"OBCS","publications":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024438/"}],"version":"2023-12-08"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/obcs.owl"}],"description":"OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. ","extras":{"version.iri":"http://purl.obolibrary.org/obo/obcs/2023-12-08/obcs.owl"},"homepage":"https://github.com/obcs/obcs","name":"OBCS: Ontology of Biological and Clinical Statistics","prefix":"obcs","tracker":"https://github.com/obcs/obcs/issues","version":"2023-12-08"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/OBCS/16/obcs.owl"}],"description":"A biomedical ontology in the domain of biological and clinical statistics.","homepage":"https://github.com/obcs/obcs","name":"Ontology of Biological and Clinical Statistics","prefix":"OBCS"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Ontology of Biological and Clinical Statistics","prefix":"OBCS"},"cheminf":null,"fairsharing":{"description":"The Ontology of Biological and Clinical Statistics (OBCS) is a biomedical ontology in the domain of biological and clinical statistics. OBCS is primarily targeted for statistical representation in the fields in biological, biomedical, and clinical domains. OBCS uses the Basic Formal Ontology (BFO) as the upper level ontology. OBCS imports all biostatistics related terms in the Ontology for Biomedical Investigations (OBI) including all logical axioms.","homepage":"https://github.com/obcs/obcs","keywords":["Biomedical Science","Biology","Medical Informatics","Statistics","Medicine","vaccine"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Ontology of Biological and Clinical Statistics","prefix":"FAIRsharing.5p12xh","publications":[{"doi":"10.1186/s13326-016-0100-2","pubmed":"27627881","title":"The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis","url":"http://doi.org/10.1186/s13326-016-0100-2","year":2016}],"repository":"https://github.com/obcs/obcs/issues","short_names":["OBCS"]},"biocontext":{"prefix":"OBCS","uri_format":"http://purl.obolibrary.org/obo/OBCS_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"obi":{"prefix":"obi","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/OBI_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0400109","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://github.com/obi-ontology/obi/raw/master/views/obi.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"OBI","banana_peel":"_","deprecated":null,"mappings":{"aberowl":"OBI","biocontext":"OBI","bioportal":"OBI","fairsharing":"FAIRsharing.284e1z","go":"OBI","miriam":"obi","n2t":"obi","obofoundry":"obi","ols":"obi","ontobee":"OBI","prefixcommons":"obi","tib":"obi","wikidata.entity":"Q7095051"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27128319","doi":"10.1371/journal.pone.0154556","pmc":"PMC4851331","title":"The Ontology for Biomedical Investigations","year":2016},{"pubmed":"25632945","doi":"10.1093/database/bau132","pmc":"PMC4309925","title":"Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach","year":2015},{"pubmed":"23734660","doi":"10.1186/2041-1480-4-s1-s6","pmc":"PMC3633001","title":"Query enhancement through the practical application of ontology: the IEDB and OBI","year":2013},{"pubmed":"22180825","doi":"10.4056/sigs.1994602","pmc":"PMC3235517","title":"Minimum Information about a Genotyping Experiment (MIGEN)","year":2011},{"pubmed":"20626927","doi":"10.1186/2041-1480-1-s1-s7","pmc":"PMC2903726","title":"Modeling biomedical experimental processes with OBI","year":2010}],"appears_in":null,"depends_on":null,"namespace_in_lui":true,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).","examples":["OBI_0000070"],"extras":{"miriam_id":"00000127","namespaceEmbeddedInLui":false},"homepage":"http://www.ontobee.org/","name":"Ontology for Biomedical Investigations","pattern":"^OBI_\\d{7}$","prefix":"obi","status":"active","uri_format":"http://purl.obolibrary.org/obo/$1"},"n2t":{"description":"The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).","examples":["OBI_0000070"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.ontobee.org/","name":"OBI through Ontobee","pattern":"(^OBI:\\d{7}$)|(^OBI_\\d{7}$)","prefix":"obi","uri_format":"http://purl.obolibrary.org/obo/$1"},"prefixcommons":{"description":"The Ontology for Biomedical Investigations (OBI) an ontology of investigations, the protocols and instrumentation used, the material used, the data generated and the types of analysis performed on it.","examples":["OBI_0000011"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/OBI#$1"]},"homepage":"http://purl.obolibrary.org/obo/obi","keywords":["ontology"],"license":{"name":"CC-BY-3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Ontology for Biomedical Investigations","pattern":"^OBI_\\d{7}$","prefix":"obi","prefix_synonyms":["obo.obi"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/obi:$1"}],"xrefs":{"bioportal":"1123"}},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://obi-ontology.org/","name":"Ontology for Biomedical Investigations","prefix":"OBI"},"obofoundry":{"appears_in":["agro","foodon","gallont","hso","labo","maxo","mco","one","ons","proco","rbo","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/obi.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/obi.obo"}],"contact":{"email":"bpeters@lji.org","github":"bpeters42","name":"Bjoern Peters","orcid":"0000-0002-8457-6693"},"description":"An integrated ontology for the description of life-science and clinical investigations","domain":"investigations","homepage":"http://obi-ontology.org","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"logo":"https://svn.code.sf.net/p/obi/code/trunk/web/htdocs/images/obi-lotext.png","name":"Ontology for Biomedical Investigations","preferred_prefix":"OBI","prefix":"obi","publications":[{"pubmed":"27128319","title":"The Ontology for Biomedical Investigations"}],"repository":"https://github.com/obi-ontology/obi","status":"active"},"bioportal":{"contact":{"email":"bpeters@liai.org","name":"Bjoern Peters"},"description":"OBI is an ontology of investigations, the protocols and instrumentation used, the material used, the data generated and the types of analysis performed on it.RxNorm is intended to cover all prescription medications approved for human use in the United States. Prescription medications from other countries may be included as opportunities allow, a principal consideration being that there be an authoritative source of information about these drugs. Drugs are added to the vocabulary as new products are put on the market. Over-the-counter (OTC) medications will be added and covered, as well, when reliable information about the medications can be found. Drugs are added to the vocabulary as new products are put on the market.
An RxNorm clinical drug name reflects the active ingredients, strengths, and dose form composing that drug. When any of these elements vary, a new RxNorm drug name is created as a separate concept. Thus, an RxNorm name should exist for every strength and dose of every available combination of clinically significant ingredients.
National Drug Codes (NDCs) for specific drug products are linked to that product in RxNorm. RxNorm links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex®, Gold Standard Alchemy, and Multum. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.
","homepage":"https://www.nlm.nih.gov/research/umls/rxnorm/index.html","name":"RxNORM","prefix":"RXNORM","version":"20AA_250902F"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"description":"RxNorm Vocabulary","name":"RxNORM","prefix":"RXNORM","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"RXNORM","uri_format":"http://purl.bioontology.org/ontology/RXNORM/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, MediSpan, Gold Standard Drug Database, and Multum. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary. RxNorm now includes the National Drug File - Reference Terminology (NDF-RT) from the Veterans Health Administration. NDF-RT is a terminology used to code clinical drug properties, including mechanism of action, physiologic effect, and therapeutic category.","homepage":"https://www.nlm.nih.gov/research/umls/rxnorm/","keywords":["Preclinical Studies","Biomedical Science","Drug name","drug"],"license":{"url":"https://www.nlm.nih.gov/research/umls/rxnorm/docs/termsofservice.html"},"name":"RxNORM","prefix":"FAIRsharing.36pf8q","publications":[{"pubmed":"18998891","title":"RxTerms - a drug interface terminology derived from RxNorm","url":"https://www.ncbi.nlm.nih.gov/pubmed/18998891","year":2008},{"doi":"10.1136/amiajnl-2011-000116","pubmed":"21515544","title":"Normalized names for clinical drugs: RxNorm at 6 years","url":"http://doi.org/10.1136/amiajnl-2011-000116","year":2011},{"doi":"10.1109/mitp.2005.122","title":"RxNorm: prescription for electronic drug information exchange","url":"http://doi.org/10.1109/MITP.2005.122","year":2005}],"short_names":["RxNORM"]},"biocontext":{"prefix":"RXCUI","uri_format":"http://purl.bioontology.org/ontology/RXNORM/$1"},"edam":null,"re3data":null,"hl7":{"description":"RxNorm provides standard names for clinical drugs (active ingredient + strength + dose form) and for dose forms as administered to a patient. It provides links from clinical drugs, both branded and generic, to their active ingredients, drug components (active ingredient + strength), and related brand names. NDCs (National Drug Codes) for specific drug products (where there are often many NDC codes for a single product) are linked to that product in RxNorm. RxNorm links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, MediSpan, and Multum. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.RxNorm is one of a suite of designated standards for use in U.S. Federal Government systems for the electronic exchange of clinical health information.","extras":{"organization":"National Library of Medicine"},"homepage":"http://www.nlm.nih.gov/","name":"RxNorm","preferred_prefix":"rxNorm","prefix":"2.16.840.1.113883.6.88","status":"active"},"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"s_mart_db":{"prefix":"s_mart_db","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc00674","pathguide":"47","prefixcommons":"s_mart_db"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.","examples":["SM0000020"],"homepage":"http://smartdb.bioinf.med.uni-goettingen.de/","keywords":["protein"],"name":"The S/MAR transaction DataBase","pattern":"^SM\\d$","prefix":"s_mart_db","prefix_synonyms":["smartdb"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/s_mart_db:$1"}],"uri_format":"http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"S/MARt DB is a database of cellular scaffolds and matrix data. The database contains scaffold, matrix, and nuclear matrix information from species ranging from yeast to humans. genes with experimentally identified interactions with scaffold and matrix components are available in tabular or searchable formats.","homepage":"http://smartdb.bioinf.med.uni-goettingen.de/","keywords":["DNA","Protein","Sequence"],"name":"The S/MAR transaction DataBase","prefix":"nbdc00674","publications":[{"pubmed":"11752340"}],"short_names":["S/MARt DB"],"status":"inactive"},"pathguide":{"homepage":"http://smartdb.bioinf.med.uni-goettingen.de/","name":"The S/MAR transaction DataBase","prefix":"47","short_names":["S/MARt_DB"]},"tib":null},"sabiork.compound":{"prefix":"sabiork.compound","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sabiork.compound","n2t":"sabiork.compound"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.","examples":["75"],"extras":{"miriam_id":"00000688","namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Compound","pattern":"^\\d+$","prefix":"sabiork.compound","status":"active","uri_format":"http://sabiork.h-its.org/newSearch?q=$1"},"n2t":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.","examples":["75"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Compound","pattern":"^\\d+$","prefix":"sabiork.compound","uri_format":"http://sabiork.h-its.org/newSearch?q=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sabiork.ec":{"prefix":"sabiork.ec","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Ulrike Wittig","orcid":"0000-0002-9077-5664","email":"ulrike.wittig@h-its.org","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"ec","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SABIORK.EC","miriam":"sabiork.ec","n2t":"sabiork.ec","prefixcommons":"sabiork.ec"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17822389","doi":null,"pmc":null,"title":"Storing and annotating of kinetic data","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.","examples":["2.7.1.1"],"extras":{"miriam_id":"00000128","namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK EC Record","pattern":"^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$","prefix":"sabiork.ec","status":"active","uri_format":"http://sabiork.h-its.org/newSearch?q=ecnumber:$1"},"n2t":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.","examples":["2.7.1.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Reaction Kinetics Database - Enzyme Classification (EC)","pattern":"^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$","prefix":"sabiork.ec","uri_format":"http://sabiork.h-its.org/newSearch?q=ecnumber:$1"},"prefixcommons":{"description":"The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.","examples":["2.7.1.1"],"keywords":["reaction"],"name":"SABIO-RK EC Record","pattern":"^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$","prefix":"sabiork.ec","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sabiork.ec:$1"}],"publications":[{"pubmed":"17822389"}],"uri_format":"http://sabiork.h-its.org/index2.jsp?EC=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SABIORK.EC","uri_format":"http://identifiers.org/sabiork.ec/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sabiork.kineticrecord":{"prefix":"sabiork.kineticrecord","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Ulrike Wittig","orcid":"0000-0002-9077-5664","email":"ulrike.wittig@h-its.org","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SABIORK.KINETICRECORD","go":"SABIO-RK","miriam":"sabiork.kineticrecord","n2t":"sabiork.kineticrecord","prefixcommons":"sabiork.kinetic"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"17822389","doi":null,"pmc":null,"title":"Storing and annotating of kinetic data","year":2007}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.","examples":["5046"],"extras":{"miriam_id":"00000086","namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Kinetic Record","pattern":"^\\d+$","prefix":"sabiork.kineticrecord","status":"active","uri_format":"http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"},"n2t":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.","examples":["5046"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Reaction Kinetics Database - Kinetic Dataset","pattern":"^\\d+$","prefix":"sabiork.kineticrecord","uri_format":"http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"},"prefixcommons":{"description":"The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.","examples":["5046"],"keywords":["classification","enzyme","kinetics"],"name":"SABIO-RK Kinetic Record","pattern":"^\\d+$","prefix":"sabiork.kinetic","prefix_synonyms":["sabiok","sabio-kr","sabiork.kineticrecord"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sabiork.kinetic:$1"}],"publications":[{"pubmed":"17822389"}],"uri_format":"http://sabiork.h-its.org/kineticLawEntry.jsp?kinlawid=$1"},"wikidata":null,"wikidata_entity":null,"go":{"description":"The SABIO-RK (System for the Analysis of Biochemical Pathways - Reaction Kinetics) is a web-based application based on the SABIO relational database that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.","homepage":"http://sabio.villa-bosch.de/","name":"SABIO Reaction Kinetics","prefix":"SABIO-RK","uri_format":"http://sabio.villa-bosch.de/reacdetails.jsp?reactid=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SABIORK.KINETICRECORD","uri_format":"http://identifiers.org/sabiork.kineticrecord/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sabiork.reaction":{"prefix":"sabiork.reaction","name":null,"description":null,"pattern":null,"uri_format":"http://sabiork.h-its.org/reacdetails.jsp?reactid=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Ulrike Wittig","orcid":"0000-0002-9077-5664","email":"ulrike.wittig@h-its.org","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SABIORK.REACTION","edam":"2309","miriam":"sabiork.reaction","n2t":"sabiork.reaction","pathguide":"226","prefixcommons":"sabiork.reaction","re3data":"r3d100011052","uniprot":"DB-0177"},"synonyms":["SABIO-RK"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22102587","doi":"10.1093/nar/gkr1046","pmc":"PMC3245076","title":"SABIO-RK--database for biochemical reaction kinetics","year":2011},{"pubmed":"29092055","doi":"10.1093/nar/gkx1065","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.","examples":["75"],"extras":{"miriam_id":"00000038","namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK Reaction","pattern":"^\\d+$","prefix":"sabiork.reaction","status":"active","uri_format":"http://sabiork.h-its.org/newSearch?q=sabioreactionid:$1"},"n2t":{"description":"SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.","examples":["75"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sabiork.h-its.org/","name":"SABIO-RK reaction","pattern":"^\\d+$","prefix":"sabiork.reaction","uri_format":"http://sabiork.h-its.org/newSearch?q=sabioreactionid:$1"},"prefixcommons":{"description":"The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.","examples":["75"],"keywords":["kinetics","pathway","reaction"],"name":"SABIO-RK Reaction Record","pattern":"^\\d+$","prefix":"sabiork.reaction","prefix_synonyms":["sabior"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sabiork.reaction:$1"}],"uri_format":"http://sabiork.h-its.org/index2.jsp?reac=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://sabiork.h-its.org/","keywords":["Enzyme and pathway databases"],"name":"SABIO-RK","prefix":"DB-0177","publications":[{"doi":"10.1093/nar/gkx1065","pubmed":"29092055"}],"short_names":["SABIO-RK"],"uri_format":"https://sabiork.h-its.org/newSearch?q=UniProtKB_AC:$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SABIORK.REACTION","uri_format":"http://identifiers.org/sabiork.reaction/$1"},"edam":{"description":"Identifier of a biological reaction from the SABIO-RK reactions database.","name":"Reaction ID (SABIO-RK)","prefix":"2309"},"re3data":{"description":"The SABIO-RK is a web-based application based on the SABIO relational database that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. It aims to support modellers in the setting-up of models of biochemical networks, but it is also useful for experimentalists or researchers with interest in biochemical reactions and their kinetics. All the data are manually curated and annotated by biological experts, supported by automated consistency checks.","homepage":"https://sabiork.h-its.org/","license":{"name":"Copyrights"},"name":"SABIO-RK","prefix":"r3d100011052","prefix_synonyms":["Biochemical reation kinetics database","System for the Analysis of Biochemical Pathways - Reaction Kinetics"],"xrefs":{"doi":"10.17616/R33C9X","nif":"0000-20912"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://sabio.villa-bosch.de/","keywords":["BioPAX","SBML"],"name":"SABIO-Reaction Kinetics Database","prefix":"226","short_names":["SABIO-RK"]},"tib":null},"sael":{"prefix":"sael","name":"Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18629134","doi":"10.1002/cfg.434","pmc":"PMC2447422","title":"The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sage.socialsciencethesaurus":{"prefix":"sage.socialsciencethesaurus","name":"SAGE Social Science Thesaurus","description":"The SAGE Social Science Thesaurus is a multidisciplinary vocabulary of the most important concepts in the social sciences. SAGE uses this vocabulary as its principal keyword vocabulary for automated tagging of content on SAGE Knowledge and SAGE Research Methods. You are welcome to browse, download, use and transform the vocabulary for any non-commercial purpose.\n\nThe majority of concepts in the thesaurus have been mined from headwords in SAGE encyclopedias and other reference works. Relationships between concepts have been inferred from implicit structures in those works, for example subject indexes and readers' guides. As such, the thesaurus is a structured representation of what the editors of those reference works consider to be the most important concepts in the social sciences.\n\nAdditional scraping work has extracted and structured concept-specific metadata, such as dates (for events and people) and definitions. In addition to broader-narrower relationships, concepts are grouped by type: concepts, people, organizations, events, methods, theories or laws.","pattern":null,"uri_format":"http://data.loterre.fr/ark:/67375/N9J$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://loterre.istex.fr/N9J/en/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"-LHR8P7WS-K","example_extras":null,"example_decoys":null,"license":"CC BY-NC-SA 4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"salk":{"prefix":"salk","name":"Salk Institute for Biological Studies","description":"Scientific research institute for neuroscience, genetics, immunology, plant biology and more.","pattern":"^\\d{6}$","uri_format":"https://abrc.osu.edu/stocks/number/SALK_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.salk.edu/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"037727","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":["efo"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"spider stuff!","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"salmon":{"prefix":"salmon","name":null,"description":null,"pattern":"^\\d+$","uri_format":"https://purl.dataone.org/odo/SALMON_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/DataONEorg/sem-prov-ontologies/tree/main/salmon","repository":null,"contact":{"name":"Bryce Mecum","orcid":"0000-0002-0381-3766","email":"brycemecum@gmail.com","github":"amoeba"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000674","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SALMON","bioportal":"SALMON"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jones@nceas.ucsb.edu","name":"Matthew Jones"},"description":"An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies/","name":"Salmon Ontology","prefix":"SALMON","version":"0.4.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SALMON/2/salmon.owl"}],"description":"An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies/","name":"Salmon Ontology","prefix":"SALMON","version":"0.3.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sao":{"prefix":"sao","name":"Subcellular Anatomy Ontology","description":null,"pattern":"^\\d+$","uri_format":"http://uri.neuinfo.org/nif/nifstd/sao$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"5277619","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SAO","biocontext":"SAO","bioportal":"SAO","fairsharing":"FAIRsharing.vhgehd","obofoundry":"sao","prefixcommons":"sao","wikidata.entity":"Q114677911"},"synonyms":null,"keywords":null,"domain":null,"references":["http://www.ontobee.org/ontology/SAO"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.","examples":["sao1289741256"],"homepage":"http://ccdb.ucsd.edu/SAO","keywords":["owl","biochemistry"],"name":"Subcellular Anatomy Ontology (SAO)","pattern":"^sao\\d+$","prefix":"sao","prefix_synonyms":["sao:"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sao:$1"}],"uri_format_rdf":"http://ccdb.ucsd.edu/SAO/1.2#$1","xrefs":{"bioportal":"1068"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"slarson@ncmir.ucsd.edu","name":"Stephen Larson"},"domain":"anatomy and development","homepage":"http://ccdb.ucsd.edu/CCDBWebSite/sao.html","name":"Subcellular anatomy ontology","preferred_prefix":"SAO","prefix":"sao","status":"inactive","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"mmartone@ucsd.edu","name":"Maryann Martone"},"description":"SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.","name":"Subcellular Anatomy Ontology","prefix":"SAO","version":"Version 1.2"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SAO/2/sao.owl"}],"description":"SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.","homepage":"http://ccdb.ucsd.edu/SAO","name":"Subcellular Anatomy Ontology","prefix":"SAO","version":"Version 1.2"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.","homepage":"http://purl.bioontology.org/ontology/SAO","keywords":["Life Science","Anatomy","cell","cellular_component"],"name":"Subcellular Anatomy Ontology","prefix":"FAIRsharing.vhgehd","short_names":["SAO"]},"biocontext":{"prefix":"SAO","uri_format":"http://purl.obolibrary.org/obo/SAO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"saref":{"prefix":"saref","name":"Smart Applications Reference ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Actuation","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"agroportal":"SAREF","lov":"saref","tib":"saref"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":{"contact":{"email":"maxime.lefrancois@emse.fr","name":"Maxime Lefrançois"},"description":"The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market.","extras":{"example_uri":"https://saref.etsi.org/core/Command"},"homepage":"https://saref.etsi.org/","license":{"name":"https://forge.etsi.org/etsi-software-license"},"name":"Smart Applications REFerence ontology","prefix":"SAREF","publications":[{"url":"https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/04.01.01_60/ts_103264v040101p.pdf"}],"version":"v4.1.1"},"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The Smart Appliances REFerence (SAREF) ontology is a shared model of consensus that facilitates the matching of existing assets (standards/protocols/datamodels/etc.) in the smart appliances domain. The SAREF ontology provides building blocks that allow separation and recombination of different parts of the ontology depending on specific needs.","homepage":"https://saref.etsi.org/core/","keywords":["Industry","IoT","Services"],"name":"SAREF: the Smart Appliances REFerence ontology","prefix":"saref","uri_format":"https://saref.etsi.org/core/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The Smart Applications REFerence ontology (SAREF) is intended to enable interoperability between solutions from different providers and among various activity sectors in the Internet of Things (IoT), thus contributing to the development of the global digital market.","extras":{"version.iri":"https://saref.etsi.org/core/v4.1.1/"},"homepage":"https://saref.etsi.org/core/","keywords":["NFDI4ING","Digital Planning and Construction","FID BAUdigital","engineering"],"name":"SAREF: the Smart Applications REFerence ontology","prefix":"saref","tracker":"https://saref.etsi.org/sources/saref-core/issues","uri_format":"https://saref.etsi.org/core/$1"}},"saref.agri":{"prefix":"saref.agri","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Animal","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4agri","tib":"s4agri"},"synonyms":["s4agri"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology extends the SAREF ontology for the Agricultural domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Agricultural domain.","homepage":"https://saref.etsi.org/saref4agri/","keywords":["Food","IoT"],"name":"SAREF extension for Agriculture","prefix":"s4agri","uri_format":"https://saref.etsi.org/saref4agri/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4AGRI is an extension of SAREF for the agriculture and food domain. SAREF4AGRI is specified and published by ETSI in the TS 103 410-6 associated to this ontology file. The list of use cases, standards and requirements that guided the creation of SAREF4AGRI are described in the associated ETSI TR 103 511.","extras":{"version.iri":"https://saref.etsi.org/saref4agri/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4agri/","keywords":["Miscellaneous","agriculture"],"name":"SAREF4AGRI: an extension of SAREF for the agriculture and food domain","prefix":"s4agri","tracker":"https://labs.etsi.org/rep/saref/saref4agri/-/issues","uri_format":"https://saref.etsi.org/saref4agri/$1"}},"saref.auto":{"prefix":"saref.auto","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AcousticSensor","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"s4auto"},"synonyms":["s4auto"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the automotive domain. This work has been developed in the context of the STF 566, which was established with the goal to create four SAREF extensions, one of them for the automotive domain.","extras":{"version.iri":"https://saref.etsi.org/saref4auto/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4auto/","keywords":["NFDI4ING","FID move","engineering","traffic engineering"],"name":"SAREF4AUTO: an extension of SAREF for the automotive domain","prefix":"s4auto","tracker":"https://saref.etsi.org/sources/saref4auto/issues","uri_format":"https://saref.etsi.org/saref4auto/$1"}},"saref.building":{"prefix":"saref.building","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Actuator","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4bldg","tib":"s4bldg"},"synonyms":["s4bldg"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology extends the SAREF ontology for the building domain by defining building devices and how they are located in a building. This extension is based on the ISO 16739:2013 Industry Foundation Classes (IFC) standard for data sharing in the construction and facility management industries. The descriptions of the classes and properties extracted from IFC have been taken from the IFC documentation.","homepage":"https://saref.etsi.org/saref4bldg/","keywords":["IoT"],"name":"SAREF extension for building devices","prefix":"s4bldg","uri_format":"https://saref.etsi.org/saref4bldg/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the building domain by defining building devices and how they are located in a building. This extension is based on the ISO 16739:2013 Industry Foundation Classes (IFC) standard for data sharing in the construction and facility management industries. The descriptions of the classes and properties extracted from IFC have been taken from the IFC documentation.","extras":{"version.iri":"https://saref.etsi.org/saref4bldg/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4bldg/","keywords":["NFDI4ING","Digital Planning and Construction","FID BAUdigital","engineering"],"name":" SAREF4BLDG: an extension of SAREF for the building domain","prefix":"s4bldg","tracker":"https://saref.etsi.org/sources/saref4bldg/issues","uri_format":"https://saref.etsi.org/saref4bldg/$1"}},"saref.city":{"prefix":"saref.city","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AccessibilityConcept","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4city","tib":"s4city"},"synonyms":["s4city"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain.","homepage":"https://saref.etsi.org/saref4city/","keywords":["Government","IoT"],"name":"SAREF extension for Smart City","prefix":"s4city","uri_format":"https://saref.etsi.org/saref4city/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the Smart City domain. This work has been developed in the context of the STF 534 (https://portal.etsi.org/STF/STFs/STFHomePages/STF534.aspx), which was established with the goal to create three SAREF extensions, one of them for the Smart City domain.","extras":{"version.iri":"https://saref.etsi.org/saref4city/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4city/","keywords":["Digital Planning and Construction","FID move","civil engineering","traffic engineering","computer science"],"name":"SAREF4CITY: an extension of SAREF for the Smart City domain","prefix":"s4city","uri_format":"https://saref.etsi.org/saref4city/$1"}},"saref.ehaw":{"prefix":"saref.ehaw","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Activity","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"S4EHAW","bioportal":"S4EHAW","lov":"s4ehaw","tib":"s4ehaw"},"synonyms":["s4ehaw"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"mohamed-el-amine.boukerfa@inrae.fr","name":"LOV Migration"},"description":"The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. \nSAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both:\n - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e.\n - Use case 1 ?elderly at home monitoring and support?,\n - Use case 2 ?monitoring and support of healthy lifestyles for citizens?,\n - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification.\n\nSAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology.\n\nFor semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure).\nFor embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e.\n - Use case 1 “elderly at home monitoring and support”,\n - Use case 2 “monitoring and support of healthy lifestyles for citizens”,\n - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509","license":{"name":"https://forge.etsi.org/etsi-software-license"},"name":"SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain","prefix":"S4EHAW","version":"v1.1.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/S4EHAW/1/s4ehaw.owl"}],"description":"The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both: - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e. - Use case 1 ?elderly at home monitoring and support?, - Use case 2 ?monitoring and support of healthy lifestyles for citizens?, - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification. SAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology.  For semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure). For embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service., i.e. - Use case 1 “elderly at home monitoring and support”, - Use case 2 “monitoring and support of healthy lifestyles for citizens”, - Use case 3 “Early Warning System (EWS) and Cardiovascular Accidents detection”. - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509","name":"SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain","prefix":"S4EHAW","version":"v1.1.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The objective of SAREF4EHAW is to extend SAREF ontology for the eHealth/Ageing-well (EHAW) vertical. Clause 4.1 of the present document shortly introduces a high level view of the envisioned SAREF4EHAW semantic model and modular ontology, with the retained concepts (i.e. classes) and their relations. \nSAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources, as reported in ETSI TR 103 509, such as: potential stakeholders, standardization initiatives, alliances/associations, European projects, EC directives, existing ontologies, and data repositories. Therefore, SAREF4EHAW modular ontology shall both:\n - Allow the implementation of a limited set of typical EHAW related use cases already identified in ETSI TR 103 509, i.e.\n - Use case 1 ?elderly at home monitoring and support?,\n - Use case 2 ?monitoring and support of healthy lifestyles for citizens?,\n - Use case 3 ?Early Warning System (EWS) and Cardiovascular Accidents detection?.\n - Fulfil the eHealth Ageing Well related requirements provided in ETSI TR 103 509, mainly the ontological ones that were mostly taken as input for the ontology specification.\n\nSAREF4EHAW mainly reuses the following existing ontologies: SAREF, ETSI SmartBAN reference model, SAREF 4 Environment extension and W3C SSN System module. The following figure presents the high level view of SAREF4EHAW ontology.\n\nFor semantic interoperability handling purposes, an ontology based solution, combined with sensing-as-a-service and WoT strategies, is retained for SAREF4EHAW. Therefore, an upper level ontology, at service level, shall also behas been fully modelled (Service class and sub-classes depicted in the previous figure).\nFor embedded semantic analytics purposes, SAREF4EHAW shall behas been designed using the modularity principle (see ETSI TR 103 509) and can thus be mainly described by the following self-contained knowledge sub-ontologies (or modules): HealthActor, Ban, HealthDevice, Function (measured data related concepts included) and Service.","homepage":"https://saref.etsi.org/saref4ehaw/","keywords":["IoT"],"name":"SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain","prefix":"s4ehaw","uri_format":"https://saref.etsi.org/saref4ehaw/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4EHAW extension has been specified and formalised by investigating EHAW domain related resources","extras":{"version.iri":"https://saref.etsi.org/saref4ehaw/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4ehaw/","keywords":["NFDI4ING","engineering"],"name":"SAREF4EHAW: an extension of SAREF for eHealth Ageing Well domain","prefix":"s4ehaw","tracker":"https://saref.etsi.org/sources/saref4ehaw/issues","uri_format":"https://saref.etsi.org/saref4ehaw/$1"}},"saref.ener":{"prefix":"saref.ener","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActuatorLevel","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4ener","tib":"s4ener"},"synonyms":["s4ener"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This is the extension of SAREF for the EEBus and Energy@Home project. The documentation of SAREF4EE is available at http://ontology.tno.nl/SAREF4EE_Documentation_v0.1.pdf. SAREF4EE represents 1) The configuration information exchanged in the use case 'Remote Network Management' according to the EEBus Technical Report, Protocol Specification- Remote Network Management, version 1.0.0.2, 2015-09-19; 2) The scheduling information about power sequences exchanged in the use cases Appliance scheduling through CEM and remote start' and 'Automatic cycle rescheduling', according to the message structures described in General Message Structures, version 0.1.1, 2015-10-07; 3) The monitor and control information exchanged in the use case 'Communicate appliance status and info on manually planned cycles', according to the monitoring and control part of the Energy@Home Data Model, version 1.0; and 4) the event-based data exchanged in the use case 'Demand Response', according to General Message Structures, version 0.1.1, 2015-10-07.","homepage":"https://saref.etsi.org/saref4ener/","keywords":["Environment","Services"],"name":"SAREF4EE: the EEbus/Energy@home extension of SAREF","prefix":"s4ener","uri_format":"https://saref.etsi.org/saref4ener/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4ENER is an extension of SAREF for the Energy domain that was created in collaboration with Energy@Home (http://www.energy-home.it) and EEBus (http://www.eebus.org/en), the major Italy- and Germany-based industry associations, to enable the interconnection of their (different) data models. SAREF4ENER focuses on demand response scenarios, in which customers can offer flexibility to the Smart Grid to manage their smart home devices by means of a Customer Energy Manager (CEM). The CEM is a logical function for optimizing energy consumption and/or production that can reside either in the home gateway or in the cloud. SAREF4ENER is published as an ETSI tecnical specificatoion (ETSI TS 103 410-1).","extras":{"version.iri":"https://saref.etsi.org/saref4ener/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4ener/","keywords":["NFDI4ING","NFDI4Energy","Digital Planning and Construction","FID BAUdigital","engineering"],"name":"SAREF for Energy Flexibility","prefix":"s4ener","tracker":"https://saref.etsi.org/sources/saref4ener/issues","uri_format":"https://saref.etsi.org/saref4ener/$1"}},"saref.environment":{"prefix":"saref.environment","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirEmissionKind","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4envi","tib":"s4envi"},"synonyms":["s4envi"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology extends the SAREF ontology for the environment domain, specifically for the light pollution domain, including concepts like photometers, light, etc.","homepage":"https://saref.etsi.org/saref4envi/","keywords":["Environment","IoT"],"name":"SAREF extension for environment","prefix":"s4envi","uri_format":"https://saref.etsi.org/saref4envi/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the environment domain, specifically for the light pollution domain, including concepts like photometers, light, etc.","extras":{"version.iri":"https://saref.etsi.org/saref4envi/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4envi/","keywords":["NFDI4ING","engineering"],"name":"SAREF4ENVI: an extension of SAREF for the Environment domain","prefix":"s4envi","tracker":"https://saref.etsi.org/sources/saref4envi/issues","uri_format":"https://saref.etsi.org/saref4envi/$1"}},"saref.grid":{"prefix":"saref.grid","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActionOperation","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"s4grid"},"synonyms":["s4grid"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the smart grid domain.","extras":{"version.iri":"https://saref.etsi.org/saref4grid/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4grid/","keywords":["NFDI4Energy","engineering"],"name":"SAREF4GRID: an extension of SAREF for the Smart Grid domain","prefix":"s4grid","tracker":"https://saref.etsi.org/sources/saref4grid/issues","uri_format":"https://saref.etsi.org/saref4grid/$1"}},"saref.industry":{"prefix":"saref.industry","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Area","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4inma","tib":"s4inma"},"synonyms":["s4inma"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"SAREF4INMA is an extension of SAREF for the industry and manufacturing domain. SAREF4INMA focuses on extending SAREF for the industry and manufacturing domain to solve the lack of interoperability between various types of production equipment that produce items in a factory and, once outside the factory, between different organizations in the value chain to uniquely track back the produced items to the corresponding production equipment, batches, material and precise time in which they were manufactured. SAREF4INMA is specified and published by ETSI in the TS 103 410-5 associated to this ontology file. SAREF4INMA was created to be aligned with related initiatives in the smart industry and manufacturing domain in terms of modelling and standardization, such as the Reference Architecture Model for Industry 4.0 (RAMI), which combines several standards used by the various national initiatives in Europe that support digitalization in manufacturing. The full list of use cases, standards and requirements that guided the creation of SAREF4INMA are described in the associated ETSI TR 103 507.","homepage":"https://saref.etsi.org/saref4inma/","keywords":["Industry","IoT"],"name":"SAREF4INMA: an extension of SAREF for the industry and manufacturing domain","prefix":"s4inma","uri_format":"https://saref.etsi.org/saref4inma/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4INMA is an extension of SAREF for the industry and manufacturing domain. SAREF4INMA focuses on extending SAREF for the industry and manufacturing domain to solve the lack of interoperability between various types of production equipment that produce items in a factory and, once outside the factory, between different organizations in the value chain to uniquely track back the produced items to the corresponding production equipment, batches, material and precise time in which they were manufactured. SAREF4INMA is specified and published by ETSI in the TS 103 410-5 associated to this ontology file. SAREF4INMA was created to be aligned with related initiatives in the smart industry and manufacturing domain in terms of modelling and standardization, such as the Reference Architecture Model for Industry 4.0 (RAMI), which combines several standards used by the various national initiatives in Europe that support digitalization in manufacturing. The full list of use cases, standards and requirements that guided the creation of SAREF4INMA are described in the associated ETSI TR 103 507.","extras":{"version.iri":"https://saref.etsi.org/saref4inma/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4inma/","keywords":["NFDI4ING","engineering"],"name":"SAREF4INMA: an extension of SAREF for the industry and manufacturing domain","prefix":"s4inma","tracker":"https://saref.etsi.org/sources/saref4inma/issues","uri_format":"https://saref.etsi.org/saref4inma/$1"}},"saref.lift":{"prefix":"saref.lift","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AlarmSignal","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"s4lift"},"synonyms":["s4lift"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the Smart Lifts domain.","extras":{"version.iri":"https://saref.etsi.org/saref4lift/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4lift/","keywords":["NFDI4ING","Digital Planning and Construction","FID BAUdigital","engineering"],"name":"SAREF4LIFT: an extension of SAREF for the Smart Lifts domain","prefix":"s4lift","tracker":"https://saref.etsi.org/sources/saref4lift/issues","uri_format":"https://saref.etsi.org/saref4lift/$1"}},"saref.maritime":{"prefix":"saref.maritime","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AISDevice","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"s4mari"},"synonyms":["s4mari"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4MARI is an extension of SAREF for the maritime domain.","extras":{"version.iri":"https://saref.etsi.org/saref4mari/v1.1.1/"},"homepage":"https://saref.etsi.org/saref4mari/","keywords":["FID move","traffic engineering"],"name":"SAREF4MARI: an extension of SAREF for the maritime domain","prefix":"s4mari","tracker":"https://labs.etsi.org/rep/saref/saref4mari/-/issues","uri_format":"https://saref.etsi.org/saref4mari/$1"}},"saref.system":{"prefix":"saref.system","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Connection","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4syst","tib":"s4syst"},"synonyms":["s4syst"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The present document is the technical specification of SAREF4SYST, a generic extension of [ETSI TS 103 264 SAREF](https://www.etsi.org/deliver/etsi_ts/103200_103299/103264/02.01.01_60/ts_103264v020101p.pdf) that defines an ontology pattern which can be instantiated for different domains. SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains. The topology of features of interest is highly important in many use cases. If a room holds a lighting device, and if it is adjacent with an open window to a room whose luminosity is low, then by turning on the lighting device in the former room one may expect that the luminosity in the latter room will rise.\n\nThe SAREF4SYST ontology pattern can be instantiated for different domains. For example to describe zones inside a building (systems), that share a frontier (connections). Properties of systems are typically state variables (e.g. agent population, temperature), whereas properties of connections are typically flows (e.g. heat flow).\n\nSAREF4SYST has two main aims: on the one hand, to extend SAREF with the capability or representing general topology of systems and how they are connected or interact and, on the other hand, to exemplify how ontology patterns may help to ensure an homogeneous structure of the overall SAREF ontology and speed up the development of extensions.\n\nSAREF4SYST consists both of a core ontology, and guidelines to create ontologies following the SAREF4SYST ontology pattern. The core ontology is a lightweight OWL-DL ontology that defines 3 classes and 9 object properties.\n\nUse cases for ontology patterns are described extensively in [ETSI TR 103 549 Clauses 4.2 and 4.3](https://www.etsi.org/deliver/etsi_tr/103500_103599/103549/01.01.01_60/tr_103549v010101p.pdf).\n\nFor the Smart Energy domain:\n\n- Electric power systems can exchange electricity with other electric power systems. The electric energy can flow both ways in some cases (from the Public Grid to a Prosumer), or in only one way (from the Public Grid to a Load). Electric power systems can be made up of different sub-systems. Generic sub-types of electric power systems include producers, consumers, storage systems, transmission systems. \n- Electric power systems may be connected one to another through electrical connection points. An Electric power system may have multiple connection points (Multiple Winding Transformer generally have one single primary winding with two or more secondary windings). Generic sub-types of electrical connection points include plugs, sockets, direct-current, single-phase, three-phase, connection points. \n- An Electrical connection may exist between two Electric power systems at two of their respective connection points. Generic sub-types of electrical connections include Single-phase Buses, Three-phase Buses. A single-phase electric power system can be connected using different configurations at a three-phase bus (RN, SN, TN types).\n\nFor the Smart Building domain:\n\n- Buildings, Storeys, Spaces, are different sub-types of Zones. Zones can contain sub-zones. Zones can be adjacent or intersect with other zones. \n- Two zones may share one or more connections. For example some fresh air may be created inside a storey if it has two controllable openings to the exterior at different cardinal points. \n\nA graphical overview of the SAREF4SYST ontology is provided in Figure 1. In such figure:\n\n- Rectangles are used to denote Classes. The label of the rectangle is the identifier of the Class.\n- Plain arrows are used to represent Object Properties between Classes. The label of the arrow is the identifier of the Object Property. The origin of the arrow is the domain Class of the property, and the target of the arrow is the range Class of the property.\n- Dashed arrows with identifiers between stereotype signs (i.e. \"`<< >>`\") refer to OWL axioms that are applied to some property. Four pairs of properties are inverse one of the other; the property `s4syst:connectedTo` is symmetric, and properties `s4syst:hasSubSystem` and `s4syst:hasSubSystem` are transitive.\n- A symbol =1 near the target of an arrow denotes that the associated property is functional. A symbol ? denotes a local existential restriction.\n\n\n","homepage":"https://saref.etsi.org/saref4syst/","keywords":["IoT"],"name":"SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections","prefix":"s4syst","uri_format":"https://saref.etsi.org/saref4syst/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4SYST defines Systems, Connections between systems, and Connection Points at which systems may be connected. These core concepts can be used generically to define the topology of features of interest, and can be specialized for multiple domains.","extras":{"version.iri":"https://saref.etsi.org/saref4syst/v1.1.2/"},"homepage":"https://saref.etsi.org/saref4syst/","keywords":["NFDI4ING"],"name":"SAREF4SYST: an extension of SAREF for typology of systems and their inter-connections","prefix":"s4syst","tracker":"https://labs.etsi.org/rep/saref/saref4syst/-/issues","uri_format":"https://saref.etsi.org/saref4syst/$1"}},"saref.water":{"prefix":"saref.water","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AcceptabilityProperty","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4watr","tib":"s4watr"},"synonyms":["s4watr"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain.","homepage":"https://saref.etsi.org/saref4watr/","keywords":["Environment","IoT"],"name":"SAREF extension for water","prefix":"s4watr","uri_format":"https://saref.etsi.org/saref4watr/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"This ontology extends the SAREF ontology for the water domain. This work has been developed in the context of the STF 566, which was established with the goal to create three SAREF extensions, one of them for the water domain.","extras":{"version.iri":"https://saref.etsi.org/saref4watr/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4watr/","keywords":["NFDI4ING","engineering"],"name":"SAREF4WATR: an extension of SAREF for the water domain","prefix":"s4watr","tracker":"https://saref.etsi.org/sources/saref4watr/issues","uri_format":"https://saref.etsi.org/saref4watr/$1"}},"saref.wearable":{"prefix":"saref.wearable","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BiometricProperty","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"s4wear","tib":"s4wear"},"synonyms":["s4wear"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"SAREF4WEAR is an extension of SAREF for Wearables","homepage":"https://saref.etsi.org/saref4wear/","keywords":["IoT"],"name":"SAREF4WEAR: an extension of SAREF for Wearables","prefix":"s4wear","uri_format":"https://saref.etsi.org/saref4wear/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"SAREF4WEAR is an extension of SAREF for Wearables","extras":{"version.iri":"https://saref.etsi.org/saref4wear/v2.1.1/"},"homepage":"https://saref.etsi.org/saref4wear/","keywords":["NFDI4ING","engineering"],"name":"SAREF4WEAR: an extension of SAREF for the Wearables domain","prefix":"s4wear","tracker":"https://saref.etsi.org/sources/saref4wear/issues","uri_format":"https://saref.etsi.org/saref4wear/$1"}},"sargon":{"prefix":"sargon","name":"Smart Energy Domain Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AC-DC","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"sargon"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://sargon-n5geh.netlify.app/ontologies/Sargon.owl"}],"description":"SARGON (SmArt eneRGy dOmain oNtology) is an open-source effort to define semantic descriptions of the smart assets in building automation and smart grid and the relationships between them. SARGON consists of an extensible dictionary of terms and concepts in and around building and smart grid, a set of relationships for linking and composing concepts together, and a flexible data model permitting seamless integration of SARGON with existing tools and databases. Through the use of powerful Semantic Web technology, SARGON can describe the broad set of Devices and custom features, assets and subsystems found across the building stock in a consistent matter.","homepage":"https://sargon-n5geh.netlify.app/","keywords":["NFDI4Energy","engineering"],"name":"SARGON (SmArt eneRGy dOmain oNtology)","prefix":"sargon","tracker":"https://github.com/N5GEH/SARGON-Website/issues","uri_format":"https://sargon-n5geh.netlify.app/ontology/1.0/object_properties/$1"}},"sasap":{"prefix":"sasap","name":null,"description":null,"pattern":"^\\d+$","uri_format":"https://purl.dataone.org/odo/SASAP_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/DataONEorg/sem-prov-ontologies/tree/main/salmon","repository":null,"contact":{"name":"Bryce Mecum","orcid":"0000-0002-0381-3766","email":"brycemecum@gmail.com","github":"amoeba"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000101","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SASAP","bioportal":"SASAP"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jones@nceas.ucsb.edu","name":"Matt Jones"},"description":"An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"The State of Alaska's Salmon and People Ontology","prefix":"SASAP","version":"0.3.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SASAP/2/sasap.owl"}],"description":"An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"The State of Alaska's Salmon and People Ontology","prefix":"SASAP","version":"0.1.1"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sasbdb":{"prefix":"sasbdb","name":"Small Angle Scattering Biological Data Bank","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SASBDB","miriam":"sasbdb","n2t":"sasbdb","re3data":"r3d100012273","uniprot":"DB-0258"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31576635","doi":"10.1002/pro.3731","pmc":"PMC6933840","title":"SASBDB: Towards an automatically curated and validated repository for biological scattering data","year":2019},{"pubmed":"25352555","doi":"10.1093/nar/gku1047","pmc":"PMC4383894","title":"SASBDB, a repository for biological small-angle scattering data","year":2014},{"pubmed":"31576635","doi":"10.1002/pro.3731","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.","examples":["SASDAX8"],"extras":{"miriam_id":"00000572","namespaceEmbeddedInLui":false},"homepage":"http://www.sasbdb.org/","name":"SASBDB","pattern":"^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$","prefix":"sasbdb","status":"active","uri_format":"http://www.sasbdb.org/data/$1"},"n2t":{"description":"Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.","examples":["SASDAX8"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.sasbdb.org/","name":"SASBDB at European Molecular Biology Laboratory","pattern":"^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$","prefix":"sasbdb","uri_format":"http://www.sasbdb.org/data/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.sasbdb.org/","keywords":["3D structure databases"],"name":"Small Angle Scattering Biological Data Bank","prefix":"DB-0258","publications":[{"doi":"10.1002/pro.3731","pubmed":"31576635"}],"short_names":["SASBDB"],"uri_format":"https://www.sasbdb.org/uniprot/$1/"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SASBDB","uri_format":"http://identifiers.org/sasbdb/$1"},"edam":null,"re3data":{"description":"Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.\nSASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.","homepage":"https://www.sasbdb.org/","name":"SASBDB","prefix":"r3d100012273","prefix_synonyms":["Small Angle Scattering Biological Data Bank"],"xrefs":{"doi":"10.17616/R36V1N"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sbo":{"prefix":"sbo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SBO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"biomodels","name":"BioModels","description":"Provider for SBO at BioModels","homepage":"http://biomodels.net","uri_format":"http://biomodels.net/SBO/SBO_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000485","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/sbo.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SBO","bartoc":"20713","biocontext":"SBO","bioportal":"SBO","fairsharing":"FAIRsharing.s19src","miriam":"sbo","n2t":"sbo","obofoundry":"sbo","ols":"sbo","ontobee":"SBO","prefixcommons":"sbo","tib":"sbo","wikidata.entity":"Q2377160"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22027554","doi":"10.1038/msb.2011.77","pmc":"PMC3261705","title":"Controlled vocabularies and semantics in systems biology","year":2011},{"pubmed":"17118155","doi":"10.1186/1471-2202-7-s1-s11","pmc":"PMC1775041","title":"Model storage, exchange and integration","year":2006},{"pubmed":"22027554","doi":"10.1038/msb.2011.77","pmc":null,"title":"Controlled vocabularies and semantics in systems biology","year":2011},{"pubmed":"17118155","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://upload.wikimedia.org/wikipedia/commons/f/fd/SBO_logo.png","miriam":{"description":"The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.","examples":["0000262"],"extras":{"miriam_id":"00000024","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/sbo","name":"Systems Biology Ontology","pattern":"^SBO:\\d{7}$","prefix":"sbo","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/sbo/terms?obo_id=SBO:$1"},"n2t":{"description":"The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.","examples":["0000262"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk/sbo/","name":"SBO","pattern":"^SBO:\\d{7}$","prefix":"sbo","uri_format":"https://www.ebi.ac.uk/sbo/main/SBO:$1"},"prefixcommons":{"description":"The Systems Biology Ontology is a set of controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modelling.","examples":["SBO:0000262"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/SBO#$1"]},"homepage":"http://www.ebi.ac.uk/sbo/","keywords":["obo","systems biology"],"license":{"name":"http://www.ebi.ac.uk/Information/termsofuse.html","url":"http://www.ebi.ac.uk/Information/termsofuse.html"},"name":"Systems Biology Ontology","pattern":"^SBO:\\d{7}$","prefix":"sbo","prefix_synonyms":["biomodels.sbo","Systems_Biology_Ontology"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sbo:$1"}],"publications":[{"pubmed":"17118155"}],"uri_format":"http://www.ebi.ac.uk/sbo/main/$1","xrefs":{"bioportal":"1046"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["proco","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sbo.owl"}],"contact":{"email":"sheriff@ebi.ac.uk","github":"rsmsheriff","name":"Rahuman Sheriff","orcid":"0000-0003-0705-9809"},"description":"Terms commonly used in Systems Biology, and in particular in computational modeling.","domain":"chemistry and biochemistry","homepage":"http://www.ebi.ac.uk/sbo/","license":{"name":"Artistic License 2.0","url":"http://opensource.org/licenses/Artistic-2.0"},"name":"Systems Biology Ontology","preferred_prefix":"SBO","prefix":"sbo","repository":"https://github.com/EBI-BioModels/SBO","status":"active"},"bioportal":{"contact":{"email":"sheriff@ebi.ac.uk","name":"Rahuman Sheriff"},"description":"The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling. The ontology consists of six orthogonal vocabularies defining: the roles of reaction participants (eg. \"substrate\"), quantitative parameters (eg. \"Michaelis constant\"), a precise classification of mathematical expressions that describe the system (eg. \"mass action rate law\"), the modeling framework used (eg. \"logical framework\"), and a branch each to describe entity (eg. \"macromolecule\") and interaction (eg. \"process\") types, and a branch to define the different types of metadata that may be present within a model. SBO terms can be used to introduce a layer of semantic information into the standard description of a model, or to annotate the results of biochemical experiments in order to facilitate their efficient reuse. SBO is an Open Biomedical Ontologies (OBO) candidate ontology, and is free for use. More information about SBO can be found from the project FAQ, at http://www.ebi.ac.uk/sbo/ SBO is a project of the BioModels.net effort and is developed through community collaboration.","homepage":"https://github.com/EBI-BioModels/SBO","name":"Systems Biology Ontology","prefix":"SBO","version":"28:08:2021 03:13"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sbo.owl"}],"description":"Terms commonly used in Systems Biology, and in particular in computational modeling.","homepage":"http://www.ebi.ac.uk/sbo/","name":"Systems Biology Ontology","prefix":"sbo","tracker":"https://github.com/EBI-BioModels/SBO/issues","version":"2021-08-28"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SBO/816/sbo.owl"}],"description":"Terms commonly used in Systems Biology, and in particular in computational modeling.","homepage":"http://www.ebi.ac.uk/sbo/","name":"Systems Biology Ontology","prefix":"SBO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Systems Biology Ontology","prefix":"SBO"},"cheminf":null,"fairsharing":{"description":"The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modelling. It consists of seven orthogonal vocabularies defining: reaction participants roles (e.g. \"substrate\"), quantitative parameters (e.g. \"Michaelis constant\"), classification of mathematical expressions describing the system (e.g. \"mass action rate law\"), modelling framework used (e.g. \"logical framework\"), the nature of the entity (e.g. \"macromolecule\"), the type of interaction (e.g. \"process\"), as well as a branch to define the different types of metadata that may be present within a model. Use of such terms introduces a layer of semantic information into the standard description of a model, facilitating its interpretation and efficient reuse.","homepage":"http://www.ebi.ac.uk/sbo/","keywords":["Systems Biology","molecular interaction","pathway"],"license":{"url":"https://opensource.org/licenses/artistic-license-2.0.php"},"name":"Systems Biology Ontology","prefix":"FAIRsharing.s19src","publications":[{"doi":"10.1038/msb.2011.77","pubmed":"22027554","title":"Controlled vocabularies and semantics in systems biology","url":"http://doi.org/10.1038/msb.2011.77","year":2011}],"short_names":["SBO"]},"biocontext":{"prefix":"SBO","uri_format":"http://purl.obolibrary.org/obo/SBO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modelling. It consists of seven orthogonal vocabularies defining: reaction participants roles (e.g. „substrate“), quantitative parameters (e.g. „Michaelis constant“), classification of mathematical expressions describing the system (e.g. „mass action rate law“), modelling framework used (e.g. „logical framework“), the nature of the entity (e.g. „macromolecule“), the type of interaction (e.g. „process“), as well as a branch to define the different types of metadata that may be present within a model.","homepage":"https://www.ebi.ac.uk/ols/ontologies/sbo","name":"Systems Biology Ontology","prefix":"20713","short_names":["SBO"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sbo.owl"}],"description":"SBO (Systems Biology Ontology) provides vocabularies for terms in Systems Biology, especially for computational modeling. It includes six orthogonal vocabularies defining roles of reaction participants (e.g., \"substrate\"), quantitative parameters (e.g., \"Michaelis constant\"), classifications of mathematical expressions (e.g., \"mass action rate law\"), the modeling framework (e.g., \"logical framework\"), and vocabularies describing entity (e.g., \"macromolecule\") and interaction (e.g., \"process\") types.","homepage":"http://www.ebi.ac.uk/sbo/","keywords":["NFDI4CAT","ESS","life sciences, biology","earth sciences"],"name":"Systems Biology Ontology","prefix":"sbo","tracker":"https://github.com/EBI-BioModels/SBO/issues","uri_format":"http://purl.obolibrary.org/obo/SBO_$1"}},"scancerrna":{"prefix":"scancerrna","name":"SCancerRNA","description":"SCancerRNA provides identifiers for non-coding RNA biomarkers, including long ncRNA, microRNA, PIWI-interacting RNA, small nucleolar RNA, and circular RNA, with data on their differential expression at the cellular level in cancer.","pattern":"^\\d+$","uri_format":"http://www.scancerrna.com/toDetail?id=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.scancerrna.com/","repository":null,"contact":{"name":"Tianyi Zhao","orcid":"0000-0001-7352-2959","email":"zty2009@hit.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"9530","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39341795","doi":"10.1093/gpbjnl/qzae023","pmc":null,"title":"SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1215,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scdo":{"prefix":"scdo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SCDO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000728","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SCDO","bioportal":"SCDO","fairsharing":"FAIRsharing.kkq6pw","obofoundry":"scdo","ols":"scdo","ontobee":"SCDO","wikidata.entity":"Q108710019"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":"PMC9216550","title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":"PMC7549008","title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":"PMC6878945","title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.","year":null},{"pubmed":"33021900","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.","year":null},{"pubmed":"31769834","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.","year":null},{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.","year":null},{"pubmed":"33021900","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.","year":null},{"pubmed":"31769834","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.","year":null},{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.","year":null},{"pubmed":"33021900","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.","year":null},{"pubmed":"31769834","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.","year":null},{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.","year":null},{"pubmed":"33021900","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.","year":null},{"pubmed":"31769834","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.","year":null},{"pubmed":"35363306","doi":"10.1093/database/baac014","pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","year":2022},{"pubmed":"33021900","doi":"10.1089/omi.2020.0153","pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","year":2020},{"pubmed":"31769834","doi":"10.1093/database/baz118","pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","year":2019},{"pubmed":"35363306","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.","year":null},{"pubmed":"33021900","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications.","year":null},{"pubmed":"31769834","doi":null,"pmc":null,"title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/scdo.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/scdo.obo"}],"contact":{"email":"giant.plankton@gmail.com","github":"JadeHotchkiss","name":"Jade Hotchkiss","orcid":"0000-0002-2193-0704"},"depends_on":["apollo_sv","aro","chebi","chmo","cmo","doid","dron","duo","envo","eupath","exo","gaz","gsso","hp","hsapdv","ico","ido","idomal","mp","nbo","ncit","obi","ogms","opmi","pr","sbo","stato","symp","uo","vo","vt"],"description":"An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.","domain":"health","homepage":"https://scdontology.h3abionet.org/","license":{"name":"GPL-3.0","url":"https://www.gnu.org/licenses/gpl-3.0.en.html"},"name":"Sickle Cell Disease Ontology","preferred_prefix":"SCDO","prefix":"scdo","publications":[{"pubmed":"35363306","title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation."},{"pubmed":"33021900","title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications."},{"pubmed":"31769834","title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation."}],"repository":"https://github.com/scdodev/scdo-ontology","status":"active"},"bioportal":{"contact":{"email":"giant.plankton@gmail.com","name":"Jade Hotchkiss"},"description":"The Sickle Cell Disease Ontology (SCDO) project is a collaboration between H3ABioNet (Pan African Bioinformatics Network) and SPAN (Sickle Cell Disease Pan African Network). The SCDO is currently under development and its purpose is to: 1) establish community standardized SCD terms and descriptions, 2) establish canonical and hierarchical representation of knowledge on SCD, 3) links to other ontologies and bodies of work such as DO, PhenX, MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM. Once complete, we anticipate that the ontology will: 1) be the most comprehensive collection of knowledge on SCD, 2) facilitate exploration of new scientific questions and ideas, 3) facilitate seamless data sharing and collaborations including meta-analysis within the SCD community, 4) support the building of databasing and clinical informatics in SCD.","homepage":"http://scdontology.h3abionet.org","name":"Sickle Cell Disease Ontology","prefix":"SCDO","publications":[{"url":"https://scdontology.h3abionet.org"}],"version":"2021-04-15"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/scdo.owl"}],"description":"An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.","extras":{"version.iri":"http://purl.obolibrary.org/obo/scdo/releases/2021-04-15/scdo.owl"},"homepage":"https://scdontology.h3abionet.org/","name":"Sickle Cell Disease Ontology","prefix":"scdo","tracker":"https://github.com/scdodev/scdo-ontology/issues","version":"2021-04-15"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SCDO/18/scdo.owl"}],"description":"An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.","homepage":"https://scdontology.h3abionet.org/","name":"Sickle Cell Disease Ontology","prefix":"SCDO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Sickle Cell Disease Ontology","prefix":"SCDO"},"cheminf":null,"fairsharing":{"description":"The Sickle Cell Disease Ontology (SCDO) project is a collaboration between H3ABioNet (Pan African Bioinformatics Network) and SPAN (Sickle Cell Disease Pan African Network). The SCDO is currently under development and its purpose is to: 1) establish community standardized SCD terms and descriptions, 2) establish canonical and hierarchical representation of knowledge on SCD, 3) links to other ontologies and bodies of work such as DO, PhenX MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM. ","homepage":"http://scdontology.h3abionet.org","keywords":["Biomedical Science","sickle cell disease","genetic disorder"],"license":{"url":"https://www.gnu.org/licenses/gpl.html"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbWtCIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--69320a8be8ca6a407eaf142714307b4c7e6b5f45/cropped-Screenshot-from-2020-05-23-20-20-32-2.png?disposition=inline","name":"Sickle Cell Disease Ontology","prefix":"FAIRsharing.kkq6pw","publications":[{"doi":"10.1093/database/baac014","pubmed":"35363306","title":"The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation","url":"https://doi.org/10.1093/database/baac014","year":2022},{"doi":"10.1089/omi.2020.0153","pubmed":"33021900","title":"The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications","url":"https://doi.org/10.1089/omi.2020.0153","year":2020},{"doi":"10.1093/database/baz118","pubmed":"31769834","title":"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation","url":"https://doi.org/10.1093/database/baz118","year":2019}],"repository":"https://github.com/scdodev/scdo-ontology","short_names":["SCDO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"schem":{"prefix":"schem","name":"Selventa Chemicals","description":"Selventa legacy chemical namespace used with the Biological Expression Language","pattern":"^A\\d{4}$","uri_format":"https://biopragmatics.github.io/providers/schem/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt","repository":null,"contact":{"name":"Natalie L Catlett","orcid":null,"email":null,"github":"ncatlett"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"A0001","example_extras":null,"example_decoys":null,"license":"Apache-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bel","chemistry","selventa"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://biological-expression-language.github.io/img/bel300.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"schema":{"prefix":"schema","name":"Schema.org","description":"Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.","pattern":null,"uri_format":"https://schema.org/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://schema.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Person","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://schema.org/version/latest/schemaorg-current-https.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SCHEMAORG","bartoc":"18250","biolink":"schema","bioportal":"SCHEMA","lov":"sdo","ols":"schemaorg_http","prefixcommons":"sdo","tib":"schema","zazuko":"schema"},"synonyms":["schemaorg","sdo"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"schema","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"An application ontology for the domain of Sleep Medicine","examples":["CentralSleepApneaDisorder"],"extras":{"alt_uri_formats":["http://mimi.case.edu/ontologies/2009/9/DrugOntology#$1"]},"homepage":"https://mimi.case.edu/concepts","name":"Sleep Domain Ontology","prefix":"sdo","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sdo:$1"}],"uri_format_rdf":"http://mimi.case.edu/ontologies/2009/1/SDO.owl#$1","xrefs":{"bioportal":"1651"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"johardi@stanford.edu","name":"Josef Hardi"},"description":"A collection of schemas that webmasters can use to markup HTML pages in ways recognized by major search providers, and that can also be used for structured data interoperability (e.g. in JSON). This representation includes all layers, as presented in the experimental OWL file at https://schema.org/docs/schemaorg.owl. Versions containing -fixes in their names include the fixes described at https://github.com/schemaorg/schemaorg/issues/1611#issuecomment-299292010.","homepage":"http://schema.org/","name":"Schema.org core and all extension vocabularies","prefix":"SCHEMA","version":"3.4 fixes"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"rdf","url":"https://schema.org/version/latest/schemaorg-all-http.rdf"}],"prefix":"schemaorg_http","uri_format":"http://schema.org/$1"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SCHEMAORG/2/schemaorg.owl"}],"description":"A collection of schemas that webmasters can use to markup HTML pages in ways recognized by major search providers, and that can also be used for structured data interoperability (e.g. in JSON).","homepage":"https://schema.org/","name":"Schema.org core and all extension vocabularies","prefix":"SCHEMAORG","version":"3.4"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"schema","uri_format":"http://schema.org/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"homepage":"http://schema.org/","name":"Schema.org vocabulary","prefix":"18250","short_names":["schema"]},"rrid":null,"lov":{"description":"The SALT Document Ontology captures the linear structure of the publication, in addition to the identification and revisioning information of the publication's content.","homepage":"http://salt.semanticauthoring.org/ontologies/sdo","keywords":["Catalogs"],"name":"SALT Document Ontology","prefix":"sdo","uri_format":"http://salt.semanticauthoring.org/ontologies/sdo#$1"},"zazuko":{"prefix":"schema","uri_format":"http://schema.org/$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://schema.org/docs/schemaorg.owl"}],"contact":{"email":"public-schemaorg@w3.org"},"description":"A structured data vocabulary (schema) for the web. It was created by major search engines like Google, Bing, Yahoo!, and Yandex to help webmasters provide search engines with clear, structured information about their websites' content.","homepage":"https://schema.org/","keywords":["FAIR Data Spaces","ESS"],"name":"Schema.org Vocabulary","prefix":"schema","tracker":"https://github.com/schemaorg/schemaorg","uri_format":"https://schema.org/$1"}},"scholia.resource":{"prefix":"scholia.resource","name":"Scholia Registry","description":"A frontend to Wikidata","pattern":null,"uri_format":"https://bioregistry.io/metaregistry/scholia/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scholia.toolforge.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"doi","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["registry","wikidata"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sciflection":{"prefix":"sciflection","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sciflection","re3data":"r3d100013413"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions","examples":["5ede4273-b26c-4ea4-adb7-3ce294ab3397"],"extras":{"miriam_id":"00000973","namespaceEmbeddedInLui":false},"homepage":"https://sciformation.com/sciflection.html","name":"Sciflection","pattern":"^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$","prefix":"sciflection","status":"active","uri_format":"https://sciflection.com/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"Sciflection accepts structured data directly uploaded from Electronic Laboratory Notebooks (open enventory, Sciformation ELN, open for others) in JSON format. Searchable by chemical structure, text parts, numeric parameters, etc.","homepage":"https://sciflection.com","name":"Sciflection","prefix":"r3d100013413","xrefs":{"doi":"10.17616/R31NJMUD"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sciprofiles":{"prefix":"sciprofiles","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P8159"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"numerical identifier for an author in SciProfiles by MDPI","examples":["118021","92927","94648"],"homepage":"https://sciprofiles.com/","name":"SciProfiles ID","pattern":"^[1-9]\\d*$","prefix":"P8159","uri_format":"https://sciprofiles.com/profile/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scomp":{"prefix":"scomp","name":"Selventa Complexes","description":"Selventa legacy complex namespace used with the Biological Expression Language","pattern":"^C\\d{4}$","uri_format":"https://biopragmatics.github.io/providers/scomp/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt","repository":null,"contact":{"name":"Natalie L Catlett","orcid":null,"email":null,"github":"ncatlett"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"C0001","example_extras":null,"example_decoys":null,"license":"Apache-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bel","protein complexes","selventa"],"domain":"protein complex","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://biological-expression-language.github.io/img/bel300.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scop":{"prefix":"scop","name":"Structural Classification of Proteins - Unique Identifier","description":"SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).","pattern":null,"uri_format":"http://scop.berkeley.edu/sunid=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"mrc","name":"SCOP at UK Medical Research council (MRC)","description":"SCOP at UK Medical Research council (MRC)","homepage":"https://scop.mrc-lmb.cam.ac.uk","uri_format":"https://scop.mrc-lmb.cam.ac.uk/term/$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"gendis","name":"Genomic Distribution of structural Superfamilies","description":"GenDiS is a repository of SCOP-identified homologous sequences of structural superfamily members.","homepage":"https://caps.ncbs.res.in/gendis3/home","uri_format":"https://caps.ncbs.res.in/gendis3/superfamily_display/$1","first_party":null,"publications":[{"pubmed":"40343712","doi":"10.1093/database/baaf035","pmc":"PMC12063530","title":"GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database","year":2025}],"example":null,"status":null}],"homepage":"https://scop.berkeley.edu","repository":null,"contact":{"name":"John-Marc Chandonia","orcid":"0000-0002-5153-9079","email":"JMChandonia@lbl.gov","github":"jmchandonia"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SCOP","edam":"1042","miriam":"scop","n2t":"scop","prefixcommons":"scop"},"synonyms":["scop.sun","scop.sunid"],"keywords":null,"domain":null,"references":["https://scop.berkeley.edu/help/#stableidentifiers"],"publications":[{"pubmed":"10592240","doi":"10.1093/nar/28.1.257","pmc":"PMC102479","title":"SCOP: a structural classification of proteins database","year":2000},{"pubmed":"9847194","doi":"10.1093/nar/27.1.254","pmc":"PMC148149","title":"SCOP: a Structural Classification of Proteins database","year":1999},{"pubmed":"10089491","doi":"10.1107/s0907444998009172","pmc":null,"title":"SCOP, Structural Classification of Proteins database: applications to evaluation of the effectiveness of sequence alignment methods and statistics of protein structural data","year":1998},{"pubmed":"9016544","doi":"10.1093/nar/25.1.236","pmc":"PMC146380","title":"SCOP: a structural classification of proteins database","year":1997},{"pubmed":"40343712","doi":"10.1093/database/baaf035","pmc":"PMC12063530","title":"GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database","year":2025}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes. This namespace is limited to SCOP v1 as the identifiers used by v2 are different.","examples":["47419"],"extras":{"miriam_id":"00000371","namespaceEmbeddedInLui":false},"homepage":"http://scop.berkeley.edu/","name":"SCOP","pattern":"^\\d+$","prefix":"scop","status":"active","uri_format":"http://scop.berkeley.edu/sunid=$1"},"n2t":{"description":"The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes.","examples":["47419"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://scop.berkeley.edu/","name":"SCOP at Berkeley","pattern":"^\\d+$","prefix":"scop","uri_format":"http://scop.berkeley.edu/sunid=$1"},"prefixcommons":{"description":"The SCOP database, created by manual inspection and abetted by a battery of automated methods, aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known.","examples":["47419"],"homepage":"http://scop.mrc-lmb.cam.ac.uk/scop","keywords":["protein","structure"],"name":"Structural Classification Of Proteins","pattern":"^\\d+$","prefix":"scop","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/scop:$1"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SCOP","uri_format":"http://identifiers.org/scop/$1"},"edam":{"description":"A sunid uniquely identifies an entry in the SCOP hierarchy, including leaves (the SCOP domains) and higher level nodes including entries corresponding to the protein level.","name":"SCOP sunid","prefix":"1042"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scop.sccs":{"prefix":"scop.sccs","name":"SCOP(e) concise classification string","description":"This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family.","pattern":null,"uri_format":"http://scop.berkeley.edu/sccs=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scop.berkeley.edu","repository":null,"contact":{"name":"John-Marc Chandonia","orcid":"0000-0002-5153-9079","email":"JMChandonia@lbl.gov","github":"jmchandonia"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"a.39.1.1","example_extras":["a.39.1","a.39","a"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scop","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"edam":"1041"},"synonyms":null,"keywords":null,"domain":null,"references":["https://scop.berkeley.edu/help/#stableidentifiers"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":{"description":"A SCOP concise classification string (sccs) is a compact representation of a SCOP domain classification.","name":"SCOP concise classification string (sccs)","prefix":"1041"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scop.sid":{"prefix":"scop.sid","name":"Structural Classification of Protein - Stable Domain Identifier","description":"A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1.","pattern":null,"uri_format":"http://scop.berkeley.edu/sid=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scop.berkeley.edu","repository":null,"contact":{"name":"John-Marc Chandonia","orcid":"0000-0002-5153-9079","email":"JMChandonia@lbl.gov","github":"jmchandonia"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"d4akea1","example_extras":["d9hvpa_","d1cph.1"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scop","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"edam":"1039"},"synonyms":null,"keywords":null,"domain":null,"references":["https://scop.berkeley.edu/help/#stableidentifiers"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":{"description":"Identifier of a protein domain (or other node) from the SCOP database.","name":"SCOP domain","prefix":"1039"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scopus":{"prefix":"scopus","name":"Scopus Researcher","description":"Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.scopus.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"56305849200","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scopus","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"ScopusID","wikidata":"P1153"},"synonyms":["scopus.author"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an author assigned in Scopus bibliographic database","examples":["25723615000","35247902700","37083905900","55765581600","7005487412"],"homepage":"https://www.scopus.com/freelookup/form/author.uri","name":"Scopus author ID","pattern":"^[1-9]\\d{9,11}$","prefix":"P1153","uri_format":"https://www.scopus.com/authid/detail.uri?authorId=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"ScopusID","uri_format":"https://www.scopus.com/authid/detail.uri?authorId=$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scopus.affiliation":{"prefix":"scopus.affiliation","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scopus","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1155"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an organisation in author affiliations per Scopus","examples":["60025709","60028651"],"homepage":"http://info.sciencedirect.com/scopus/scopus-in-detail/tools/affiliationidentifier","name":"Scopus affiliation ID","prefix":"P1155","uri_format":"https://www.scopus.com/affil/profile.uri?afid=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scopus.publication":{"prefix":"scopus.publication","name":"Scopus Publication","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.scopus.com/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scopus","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1156"},"synonyms":null,"keywords":null,"domain":"publication","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a source/publication venue (journal, conference, etc) in Scopus","examples":["16129","22380","25283"],"name":"Scopus source ID","pattern":"^[1-9]\\d{0,11}$","prefix":"P1156","uri_format":"https://www.scopus.com/sourceid/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scopus.work":{"prefix":"scopus.work","name":"Scopus Work","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.scopus.com/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"scopus","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1154"},"synonyms":["scopus.eid"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"unique academic work identifier assigned in Scopus bibliographic database","examples":["2-s2.0-0030770923","2-s2.0-41049112855"],"homepage":"https://plu.mx/","name":"Scopus EID","pattern":"^2-s2\\.0-\\d+$","prefix":"P1154","uri_format":"http://www.scopus.com/record/display.url?origin=inward&eid=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scor":{"prefix":"scor","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActiviateOrArchiveContract","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"scor"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/vocol/scor/master/scor.ttl"}],"description":"The Supply Chain Operation Reference (SCOR) is a cross-industry approach to lay the groundwork for more efficient and effective information exchange in supply networks.","homepage":"https://github.com/vocol/scor","keywords":["CoyPu","economics"],"name":"Supply Chain Operation Reference","prefix":"scor","tracker":"https://github.com/vocol/scor/issues","uri_format":"http://purl.org/eis/vocab/scor#$1"}},"scoro":{"prefix":"scoro","name":"Scholarly Contributions and Roles Ontology","description":"An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).","pattern":null,"uri_format":"http://purl.org/spar/scoro/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.sparontologies.net/ontologies/scoro","repository":"https://github.com/sparontologies/scoro","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IntellectualContribution","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.c86b48","lov":"scoro"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.3233/sw-150177","pmc":null,"title":"The Document Components Ontology (DoCO)","year":2016},{"pubmed":null,"doi":"10.3233/sw-150177","pmc":null,"title":"The Document Components Ontology (DoCO)","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"SCoRO","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"silvio.peroni@unibo.it","name":"Silvio Peroni","orcid":"0000-0003-0530-4305"},"description":"The Scholarly Contributions and Roles Ontology (SCoRO) is an ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator)","homepage":"http://www.sparontologies.net/ontologies/scoro","keywords":["Subject Agnostic"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Scholarly Contributions and Roles Ontology ","prefix":"FAIRsharing.c86b48","publications":[{"doi":"10.3233/sw-150177","title":"The Document Components Ontology (DoCO)","url":"https://doi.org/10.3233/SW-150177","year":2016}],"repository":"https://github.com/sparontologies/deo","short_names":["SCoRO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"SCoRO, the Scholarly Contributions and Roles Ontology, is an ontology for use by authors and publishers for describing the contributions that may be made and the roles that may be held by a person with respect to a journal article or other publication, and by research administrators and others for describing contributions and roles with respect to other aspects of scholarly research.","homepage":"https://sparontologies.github.io/scoro/current/scoro.html","keywords":["Academy"],"name":"Scholarly Contributions and Roles Ontology","prefix":"scoro","uri_format":"http://purl.org/spar/scoro/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"scpd":{"prefix":"scpd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"pathguide":"130","prefixcommons":"scpd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Database containing promotor sequences found in Saccharomyces cerevisiae.","examples":["CDC2"],"homepage":"http://rulai.cshl.edu/SCPD/","keywords":["DNA","RNA"],"name":"Saccharomyces cerevisiae promoter database","pattern":"^[A-Z.0-9]+$","prefix":"scpd","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/scpd:$1"}],"uri_format":"http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://rulai.cshl.edu/SCPD/","name":"The Promoter Database of Saccharomyces cerevisiae","prefix":"130","short_names":["SCPD"]},"tib":null},"scr":{"prefix":"scr","name":"SciCrunch Registry","description":"The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.","pattern":"^\\d+$","uri_format":"http://scicrunch.org/resolver/SCR_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://scicrunch.org/browse/resourcedashboard","repository":null,"contact":{"name":"Anita Bandrowski","orcid":"0000-0002-5497-0243","email":"abandrowski@ncmir.ucsd.edu","github":"bandrow"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"022586","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc01937","rrid":"SCR"},"synonyms":["scicrunch"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26599696","doi":"10.1002/cne.23913","pmc":"PMC4684178","title":"The Resource Identification Initiative: A Cultural Shift in Publishing","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":421,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":{"homepage":"https://scicrunch.org/scicrunch/about/sources/nlx_144509-1","keywords":["interactive portal","nih initiative","rrid"],"name":"SciCrunch Registry","prefix":"SCR","publications":[{"pubmed":"22434839"}],"xrefs":{"scr":"005400"}},"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SciCrunch resource registry is the new name of the NIF registry. SciCrunch is a data sharing and display platform. Anyone can create a custom portal where they can select searchable subsets of hundreds of data sources, brand their web pages and create their community. SciCrunch will push data updates automatically to all portals on a weekly basis.","homepage":"https://scicrunch.org/browse/datadashboard","keywords":["Cell/Organelle","Health/Disease","Portal","Repository"],"name":"SciCrunch","prefix":"nbdc01937","publications":[{"pubmed":"26599696"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.kj4pvk"}},"pathguide":null,"tib":null},"scretf":{"prefix":"scretf","name":null,"description":null,"pattern":null,"uri_format":"http://stormo.wustl.edu/ScerTF/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SCRETF","miriam":"scretf","n2t":"scretf"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.","examples":["RSC3"],"extras":{"miriam_id":"00000244","namespaceEmbeddedInLui":false},"homepage":"http://stormo.wustl.edu/ScerTF/","name":"ScerTF","pattern":"^\\w+$","prefix":"scretf","status":"deprecated","uri_format":"http://stormo.wustl.edu/ScerTF/details/$1/"},"n2t":{"description":"ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.","examples":["RSC3"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://stormo.wustl.edu/ScerTF/","name":"ScerTF at Washington University","pattern":"^\\w+$","prefix":"scretf","uri_format":"http://stormo.wustl.edu/ScerTF/details/$1/"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SCRETF","uri_format":"http://identifiers.org/scretf/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sd":{"prefix":"sd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"endpoint","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"sd","zazuko":"sd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"Un vocabulaire pour décrire des services SPARQL publiés via le protocole SPARQL 1.1 pour RDF. Ces descriptions fournissent un mécanisme par lequel un client ou un utilisateur final peuvent obtenir des informations sur le service SPARQL, telles que les extensions de fonctions supportées ou les détails à propos des jeux de données disponibles.","homepage":"http://www.w3.org/TR/sparql11-service-description/","keywords":["W3C Rec"],"name":"SPARQL 1.1 Service Description","prefix":"sd","uri_format":"http://www.w3.org/ns/sparql-service-description#$1"},"zazuko":{"prefix":"sd","uri_format":"http://www.w3.org/ns/sparql-service-description#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdap":{"prefix":"sdap","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"prefixcommons":"sdap"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes.","examples":["610"],"homepage":"http://fermi.utmb.edu/SDAP","keywords":["protein","structure"],"name":"Structural Database of Allergenic Proteins","pattern":"^\\d+$","prefix":"sdap","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sdap:$1"}],"uri_format":"http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdbs":{"prefix":"sdbs","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SDBS","integbio":"nbdc01520","miriam":"sdbs","n2t":"sdbs","wikidata":"P5926"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.","examples":["4544"],"extras":{"miriam_id":"00000319","namespaceEmbeddedInLui":false},"homepage":"https://sdbs.db.aist.go.jp","name":"Spectral Database for Organic Compounds","pattern":"^\\d+$","prefix":"sdbs","status":"active","uri_format":"https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno=$1"},"n2t":{"description":"The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.","examples":["4544"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi","name":"SDBS at AIST","pattern":"\\d+$","prefix":"sdbs","uri_format":"http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1"},"prefixcommons":null,"wikidata":{"examples":["1","1631","40403"],"name":"Spectral Database for Organic Compounds ID","pattern":"^[1-9]\\d*$","prefix":"P5926","uri_format":"https://sdbs.db.aist.go.jp/CompoundView.aspx?sdbsno=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SDBS","uri_format":"http://identifiers.org/sdbs/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"The SDBS database consists of of sensory characteristics of vision, hearing, and touch measured by National Institute of Advanced Industrial Science and Technology. To allow searches for conditions such as age and types of disability, target people with disabilities and/or older people, totaling more than 3,000, were subjected to measurement. Their characteristics data were adopted as Japanese Industrial Standards (JISs) \"Guidelines for older persons and persons with disabilities\".","homepage":"http://sdbs.db.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi","keywords":["Chemical compound","Chemical structure"],"name":"Spectral Database for Organic Compounds","prefix":"nbdc01520","short_names":["SDBS"],"status":"active"},"pathguide":null,"tib":null},"sddo":{"prefix":"sddo","name":"Science Data Discovery Ontology","description":"The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]","pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SDDO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/NASA-IMPACT/sddo","repository":"https://github.com/NASA-IMPACT/sddo","contact":{"name":"Dan Berrios","orcid":"0000-0003-4312-9552","email":"daniel.c.berrios@nasa.gov","github":"DanBerrios"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3000001","example_extras":null,"example_decoys":null,"license":"CC-BY-3.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/NASA-IMPACT/sddo/raw/refs/heads/master/sddo.owl","download_obo":"https://github.com/NASA-IMPACT/sddo/raw/refs/heads/master/sddo.obo","download_json":"https://github.com/NASA-IMPACT/sddo/raw/refs/heads/master/sddo.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1556,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdgio":{"prefix":"sdgio","name":null,"description":null,"pattern":"^\\d{8}$","uri_format":"http://purl.unep.org/sdg/SDGIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/SDG-InterfaceOntology/sdgio","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00020134","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"agroportal":"SDGIO","fairsharing":"FAIRsharing.d5ff6e","ontobee":"SDGIO"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/SDG-InterfaceOntology/sdgio/issues/233"],"publications":[{"pubmed":"27664130","doi":"10.1186/s13326-016-0097-6","pmc":"PMC5035502","title":"The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":{"contact":{"email":"pier.buttigieg@awi.de","name":"Pier Luigi Buttigieg"},"description":"The SDGIO aims to provide a semantic bridge between 1) the Sustainable Development Goals, their targets, and indicators and 2) the large array of entities they refer to. It will import classes from numerous exisitng ontologies and map to vocabularies such as GEMET to promote interoperability. New classes will be minted and defined where no external class exists.","extras":{"example_uri":"http://purl.unep.org/sdg/SDGIO_00010073"},"homepage":"https://github.com/SDG-InterfaceOntology/sdgio","name":"Sustainable Development Goals Interface Ontology","prefix":"SDGIO","publications":[{"url":"http://ceur-ws.org/Vol-1747/IT201_ICBO2016.pdf"}],"repository":"https://github.com/SDG-InterfaceOntology","version":"2018-05-11"},"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["ontology"],"name":"Sustainable Development Goals Interface Ontology","prefix":"SDGIO"},"cheminf":null,"fairsharing":{"contact":{"email":"pier.buttigieg@awi.de","name":"Pier Luigi Buttigieg","orcid":"0000-0002-4366-3088"},"description":"The Sustainable Development Goals Interface Ontology (SDGIO) aims to provide a semantic bridge between 1) the Sustainable Development Goals, their targets, and indicators and 2) the large array of entities they refer to. SDGIO will reuse existing ontologies where appropriate.","homepage":"https://github.com/SDG-InterfaceOntology/sdgio","keywords":["Environmental Science","Sustainability"],"name":"Sustainable Development Goals Interface Ontology","prefix":"FAIRsharing.d5ff6e","publications":[{"doi":"10.1186/s13326-016-0097-6","pubmed":"27664130","title":"The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation","url":"http://doi.org/10.1186/s13326-016-0097-6","year":2016}],"repository":"https://github.com/SDG-InterfaceOntology/sdgio/wiki","short_names":["SDGIO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdis":{"prefix":"sdis","name":"Selventa Diseases","description":"Selventa legacy disease namespace used with the Biological Expression Language","pattern":"^D\\d{4}$","uri_format":"https://biopragmatics.github.io/providers/sdis/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt","repository":null,"contact":{"name":"Natalie L Catlett","orcid":null,"email":null,"github":"ncatlett"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"D0001","example_extras":null,"example_decoys":null,"license":"Apache-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bel","diseases","selventa"],"domain":"disease","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://biological-expression-language.github.io/img/bel300.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdmx":{"prefix":"sdmx","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"EntityRole","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://purl.org/linked-data/sdmx","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"sdmx","zazuko":"sdmx"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This vocabulary extends the data cube vocabulary to support publication of statistical data in RDF, using an information model based on SDMX","homepage":"https://raw.githubusercontent.com/UKGovLD/publishing-statistical-data/master/specs/src/main/vocab/sdmx.ttl","keywords":["Methods"],"name":"SDMX-RDF vocabulary","prefix":"sdmx","uri_format":"http://purl.org/linked-data/sdmx#$1"},"zazuko":{"prefix":"sdmx","uri_format":"http://purl.org/linked-data/sdmx#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sdy":{"prefix":"sdy","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sdy"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ImmPort is a scientific data resource funded by the National Institutes of Health (NIH) to preserve and share immunology research and clinical trials data generated by NIH researchers and external organizations. ImmPort uses FAIR principles to maximize reuse of deposited data for advancement of biomedical sciences.","examples":["sdy998"],"extras":{"miriam_id":"00001122","namespaceEmbeddedInLui":false},"homepage":"https://docs.immport.org/home/team/","name":"Immunology Database and Analysis Portal (ImmPort)","pattern":"^[sS][dD][yY]\\d+$","prefix":"sdy","status":"active","uri_format":"https://immport.org/shared/study/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sedml.format":{"prefix":"sedml.format","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sedml.format"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).","examples":["csv"],"extras":{"miriam_id":"00000841","namespaceEmbeddedInLui":false},"homepage":"http://sed-ml.org/","name":"SED-ML data format","pattern":"^[a-z]+(\\..*?)?$","prefix":"sedml.format","status":"active","uri_format":"https://sed-ml.org/urns.html#format:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sedml.language":{"prefix":"sedml.language","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sedml.language"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).","examples":["sbml.level-3.version-2"],"extras":{"miriam_id":"00000843","namespaceEmbeddedInLui":false},"homepage":"http://sed-ml.org/","name":"SED-ML model format","pattern":"^[a-z]+(\\..*?)?$","prefix":"sedml.language","status":"active","uri_format":"https://sed-ml.org/urns.html#language:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seed.compound":{"prefix":"seed.compound","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/TheSEED","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SEED.COMPOUND","miriam":"seed.compound","n2t":"seed.compound"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.","examples":["cpd15380"],"extras":{"miriam_id":"00000553","namespaceEmbeddedInLui":false},"homepage":"http://modelseed.org/","name":"SEED Compound","pattern":"^cpd\\d+$","prefix":"seed.compound","status":"active","uri_format":"http://modelseed.org/biochem/compounds/$1"},"n2t":{"description":"This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.","examples":["cpd15380"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://modelseed.org/","name":"SEED Compound at Argonne National Laboratory","pattern":"^cpd\\d+$","prefix":"seed.compound","uri_format":"http://modelseed.org/biochem/compounds/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SEED.COMPOUND","uri_format":"http://identifiers.org/seed.compound/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seed.reaction":{"prefix":"seed.reaction","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biolink":"SEED.REACTION","miriam":"seed.reaction","n2t":"seed.reaction"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.","examples":["rxn00001"],"extras":{"miriam_id":"00000692","namespaceEmbeddedInLui":false},"homepage":"http://modelseed.org/biochem/reactions/","name":"SEED Reactions","pattern":"^rxn\\d+$","prefix":"seed.reaction","status":"active","uri_format":"http://modelseed.org/biochem/reactions/$1"},"n2t":{"description":"ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.","examples":["rxn00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://modelseed.org/biochem/reactions/","name":"SEED Reactions","pattern":"^rxn\\d+$","prefix":"seed.reaction","uri_format":"http://modelseed.org/biochem/reactions/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"SEED.REACTION","uri_format":"https://modelseed.org/biochem/reactions/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seed.role":{"prefix":"seed.role","name":"The SEED","description":"With the growing number of available genomes, the need for an environment to support effective comparative analysis increases. The original SEED Project was started in 2003 by the [Fellowship for Interpretation of Genomes (FIG)](http://thefig.info/) as a largely unfunded open source effort. Argonne National Laboratory and the University of Chicago joined the project, and now much of the activity occurs at those two institutions (as well as the University of Illinois at Urbana-Champaign, Hope college, San Diego State University, the Burnham Institute and a number of other institutions). The cooperative effort focuses on the development of the comparative genomics environment called the SEED and, more importantly, on the development of curated genomic data.\nThis prefix provides identifiers for molecular roles that describe the function of one or more proteins in microbes and plants.","pattern":null,"uri_format":"https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://theseed.org/","repository":"https://github.com/orgs/TheSEED","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Histidinol dehydrogenase (EC 1.1.1.23)","example_extras":["Archease","Xylan oligosaccharide ABC transporter, substrate-binding component"],"example_decoys":null,"license":"MIT","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16214803","doi":"10.1093/nar/gki866","pmc":"PMC1251668","title":"The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Sam Seaver","orcid":"0000-0002-7674-5194","email":"seaver@anl.gov","github":"samseaver"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":[{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"}],"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1340,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seed.subsystem":{"prefix":"seed.subsystem","name":"SEED Subsystem","description":null,"pattern":null,"uri_format":"https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/TheSEED","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SEED","go":"SEED","miriam":"seed","n2t":"seed","ncbi":"SEED"},"synonyms":["seed"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16214803","doi":"10.1093/nar/gki866","pmc":"PMC1251668","title":"The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"AJ Ireland","orcid":"0000-0003-1982-9065","email":"aireland@lbl.gov","github":"ialarmedalien"},{"name":"Sam Seaver","orcid":"0000-0002-7674-5194","email":"seaver@anl.gov","github":"samseaver"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.","examples":["Biotin_biosynthesis"],"extras":{"miriam_id":"00000552","namespaceEmbeddedInLui":false},"name":"SEED Subsystem","pattern":"^\\w+$","prefix":"seed","status":"deprecated"},"n2t":{"description":"This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.","examples":["Biotin_biosynthesis"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://seed-viewer.theseed.org/seedviewer.cgi","name":"SEED Subsystem at Argonne National Laboratory","pattern":"^\\w+$","prefix":"seed","uri_format":"http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"description":"Project to annotate the first 1000 sequenced genomes, develop detailed metabolic reconstructions, and construct the corresponding stoichiometric matrices","homepage":"http://www.theseed.org","name":"The SEED;","prefix":"SEED","uri_format":"http://www.theseed.org/linkin.cgi?id=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["fig|83331.1.peg.1"],"homepage":"http://www.theseed.org","name":"The SEED Database","prefix":"SEED"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SEED","uri_format":"http://identifiers.org/seed/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seinet":{"prefix":"seinet","name":"Southwestern Environmental Information Network","description":"A vocabulary about species to support the environmental research community in Arizona and New Mexico","pattern":"^\\d+$","uri_format":"https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://swbiodiversity.org/seinet/index.php","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"762","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P6209"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":{"name":"Tiffany J. Callahan","orcid":"0000-0002-8169-9049","email":null,"github":"callahantiff"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":653,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a species on the SEINet website","examples":["1522","3314","762"],"homepage":"http://swbiodiversity.org/seinet/index.php","name":"SEINet ID","pattern":"^[1-9]\\d*$","prefix":"P6209","uri_format":"https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"semapv":{"prefix":"semapv","name":"Semantic Mapping Vocabulary","description":"The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.","pattern":null,"uri_format":"https://w3id.org/semapv/vocab/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://mapping-commons.github.io/semantic-mapping-vocabulary/","repository":"https://github.com/mapping-commons/semantic-mapping-vocabulary","contact":{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":[{"ror":null,"wikidata":"Q115518213","name":"Semanticly","partnered":true}],"example":"LexicalMatching","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20428","ols":"semapv"},"synonyms":["semapv_voc","sempav_voc"],"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/714"],"publications":[{"pubmed":null,"doi":"10.5281/zenodo.7672103","pmc":null,"title":"A Simple Standard for Ontological Mappings 2022: Updates of data model and outlook","year":2022}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl"}],"description":"The Semantic Mapping Vocabulary (SEMAPV) captures concepts and relations related to semantic matching, including types of matching (e.g. lexical, manually curated), preprocessing methods and specialised mapping relations.","extras":{"version.iri":"http://w3id.org/semapv/vocab/releases/2025-01-06/semapv.owl"},"homepage":"https://mapping-commons.github.io/semantic-mapping-vocabulary/","name":"Semantic Mapping Vocabulary","prefix":"semapv","uri_format":"https://w3id.org/semapv/vocab/$1","version":"2025-01-06"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.","homepage":"https://mapping-commons.github.io/semantic-mapping-vocabulary/","license":{"spdx":"CC0-1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"Semantic Mapping Vocabulary","prefix":"20428","short_names":["semapv"],"uri_format":"https://w3id.org/semapv/vocab/$1"},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"semion":{"prefix":"semion","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"22132778","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P7671"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier of an author or reviewer, in Semion","examples":["1085144","17963667","2975999"],"homepage":"https://www.semion.io","name":"Semion author ID (archived)","pattern":"^\\d+$","prefix":"P7671","uri_format":"https://web.archive.org/web/1/https://www.semion.io/Author/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"senso":{"prefix":"senso","name":null,"description":null,"pattern":"^\\d+$","uri_format":"http://purl.dataone.org/odo/SENSO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/DataONEorg/sem-prov-ontologies/tree/main/senso","repository":null,"contact":{"name":"Bryce Mecum","orcid":"0000-0002-0381-3766","email":"brycemecum@gmail.com","github":"amoeba"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000003","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://ontologies.dataone.org/SENSO.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SENSO","bioportal":"SENSO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jones@nceas.ucsb.edu","name":"Matt Jones"},"description":"The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"Sensitive Data Ontology","prefix":"SENSO","version":"Version 0.1.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SENSO/1/senso.owl"}],"description":"The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.","homepage":"https://github.com/DataONEorg/sem-prov-ontologies","name":"Sensitive Data Ontology","prefix":"SENSO","version":"Version 0.1.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"seo":{"prefix":"seo","name":"Scientific Event Ontology","description":"The Scientific Event Ontology (SEO) is a reference ontology for modeling data about scientific events such as conferences, symposioums, and workshops.","pattern":null,"uri_format":"https://w3id.org/seo#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://w3id.org/seo","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Symposium","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://raw.githubusercontent.com/saidfathalla/SEOontology/master/SEO.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"seo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The vocabulary allows for the description of data about scientific events such as conferences, symposiums and workshops.","homepage":"https://saidfathalla.github.io/SEOontology/Documentation/SEO.html","keywords":["Academy","Events"],"name":"The Scientific Events Ontology","prefix":"seo","uri_format":"https://w3id.org/seo#$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sep":{"prefix":"sep","name":null,"description":null,"pattern":"^\\d{5,6}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://psidev.info/sepcv","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00073","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://raw.githubusercontent.com/HUPO-PSI/gelml/master/CV/sep.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SEP","biocontext":"SEP","bioportal":"SEP","fairsharing":"FAIRsharing.jt4pzr","obofoundry":"sep","ontobee":"SEP","prefixcommons":"sep","wikidata.entity":"Q114677913"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.","examples":["sep_00005"],"homepage":"http://psidev.info/index.php?q=node/312","keywords":["obo","protein"],"name":"Sample processing and separation techniques","pattern":"^sep_\\d+$","prefix":"sep","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sep:$1"}],"xrefs":{"bioportal":"1044"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sep.owl"}],"contact":{"email":"psidev-gps-dev@lists.sourceforge.net","name":"SEP developers via the PSI and MSI mailing lists"},"description":"A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.","domain":"investigations","homepage":"http://psidev.info/index.php?q=node/312","name":"Sample processing and separation techniques","preferred_prefix":"SEP","prefix":"sep","status":"inactive"},"bioportal":{"contact":{"email":"psidev-gps-dev@lists.sourceforge.net","name":"SEP developers"},"description":"A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.","homepage":"http://psidev.info/index.php?q=node/312","name":"Sample Processing and Separation Techniques Ontology","prefix":"SEP","version":"1.070708"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/SEP/4/sep.obo"}],"description":"A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.","homepage":"http://psidev.info/index.php?q=node/312","name":"Sample Processing and Separation Techniques Ontology","prefix":"SEP","version":"1.070708"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Sample processing and separation techniques","prefix":"SEP"},"cheminf":null,"fairsharing":{"description":"A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.","homepage":"http://psidev.info/index.php?q=node/312","keywords":["Life Science","Proteomics","chromatography","electrophoresis"],"name":"Sample Processing and Separation Techniques Ontology","prefix":"FAIRsharing.jt4pzr","short_names":["SEP"]},"biocontext":{"prefix":"SEP","uri_format":"http://purl.obolibrary.org/obo/SEP_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sepio":{"prefix":"sepio","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SEPIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000048","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SEPIO","biocontext":"SEPIO","bioportal":"SEPIO","obofoundry":"sepio","ols":"sepio","ontobee":"SEPIO","tib":"sepio","wikidata.entity":"Q55118599"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sepio.owl"}],"contact":{"email":"mhb120@gmail.com","github":"mbrush","name":"Matthew Brush","orcid":"0000-0002-1048-5019"},"description":"An ontology for representing the provenance of scientific claims and the evidence that supports them.","domain":"investigations","homepage":"https://github.com/monarch-initiative/SEPIO-ontology","license":{"name":"CC BY 3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"logo":"https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/SEPIO-LOGOS/sepio_logo_black-banner.png","name":"Scientific Evidence and Provenance Information Ontology","preferred_prefix":"SEPIO","prefix":"sepio","repository":"https://github.com/monarch-initiative/SEPIO-ontology","status":"active"},"bioportal":{"contact":{"email":"mhb120@gmail.com","name":"Matthew Brush"},"description":"The Scientific Evidence and Provenance Information Ontology (SEPIO) was developed to support description of evidence and provenance information for scientific claims. The core model represents the relationships between claims, their evidence lines, the information items that comprise these lines of evidence, and the methods, tools, and agents involved in the creation of these entities. Use cases driving SEPIO development include integration of scientific claims and their associated evidence/provenance metadata, and support for the discovery, analysis, and evaluation of claims based on this metadata.","homepage":"https://github.com/monarch-initiative/SEPIO-ontology","name":"Scientific Evidence and Provenance Information Ontology","prefix":"SEPIO","version":"2023-06-13"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sepio.owl"}],"description":"An ontology for representing the provenance of scientific claims and the evidence that supports them.","extras":{"version.iri":"http://purl.obolibrary.org/obo/sepio/releases/2023-06-13/sepio.owl"},"homepage":"https://github.com/monarch-initiative/SEPIO-ontology","name":"Ontology for Scientific Evidence and Provenance Information","prefix":"sepio","tracker":"https://github.com/monarch-initiative/SEPIO-ontology/issues","version":"2023-06-13"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SEPIO/4/sepio.owl"}],"description":"An ontology for representing the provenance of scientific claims and the evidence that supports them.","homepage":"https://github.com/monarch-initiative/SEPIO-ontology","name":"Scientific Evidence and Provenance Information Ontology","prefix":"SEPIO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Scientific Evidence and Provenance Information Ontology","prefix":"SEPIO"},"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SEPIO","uri_format":"http://purl.obolibrary.org/obo/SEPIO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sepio.owl"}],"description":"The SEPIO ontology is in its early stages of development, undergoing iterative refinement as new requirements emerge and alignment with existing standards is explored. The SEPIO core file imports two files which can be resolved at the URLs below:\n\nIAO ontology-metadata import: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/imports/ontology-metadata.owl\n\nbfo mireot: https://raw.githubusercontent.com/monarch-initiative/SEPIO-ontology/master/src/ontology/mireots/bfo-mireot.owl","extras":{"version.iri":"http://purl.obolibrary.org/obo/sepio/releases/2023-06-13/sepio.owl"},"homepage":"https://github.com/monarch-initiative/SEPIO-ontology","keywords":["NFDI4ING","NFDI4CHEM","mathematics"],"name":"Ontology for Scientific Evidence and Provenance Information","prefix":"sepio","tracker":"https://github.com/monarch-initiative/SEPIO-ontology/issues"}},"sfam":{"prefix":"sfam","name":"Selventa Families","description":"Selventa legacy protein family namespace used with the Biological Expression Language","pattern":"^F\\d{4}$","uri_format":"https://biopragmatics.github.io/providers/sfam/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt","repository":null,"contact":{"name":"Natalie L Catlett","orcid":null,"email":null,"github":"ncatlett"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"F0001","example_extras":null,"example_decoys":null,"license":"Apache-2.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["bel","protein families","selventa"],"domain":"protein family","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://biological-expression-language.github.io/img/bel300.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sfld":{"prefix":"sfld","name":"Structure Function Linkage Database","description":"The Structure-Function Linkage Database (SFLD) is a hierarchical classification of enzymes that relates specific sequence-structure features to specific chemical capabilities. It was developed by the Babbitt Laboratory in collaboration with the UCSF Resource for Biocomputing, Visualization, and Informatics. As of April 2019, the database is in static format, and will not be updated. [from https://interpro-documentation.readthedocs.io/en/latest/sfld.html, accessed March 18th, 2026]","pattern":"^SFLDS\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.ebi.ac.uk/interpro/entry/sfld","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SFLDS00019","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"uniprot":"DB-0220"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This database is now part of InterPro","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"http://sfld.rbvi.ucsf.edu/archive/django/index.html","keywords":["Family and domain databases"],"name":"Structure-Function Linkage Database","prefix":"DB-0220","publications":[{"doi":"10.1093/nar/gkt1130","pubmed":"24271399"}],"short_names":["SFLD"],"uri_format":"https://www.ebi.ac.uk/interpro/entry/sfld/$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sgd":{"prefix":"sgd","name":"Saccharomyces Genome Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"J. Michael Cherry","orcid":"0000-0001-9163-5180","email":"cherry@genome.stanford.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"S000002493","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":"sgd","provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/sgd/sgd.owl","download_obo":"https://w3id.org/biopragmatics/resources/sgd/sgd.obo","download_json":"https://w3id.org/biopragmatics/resources/sgd/sgd.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SGD","edam":"2632","go":"SGD","integbio":"nbdc00202","miriam":"sgd","n2t":"sgd","ncbi":"SGD","prefixcommons":"sgd","re3data":"r3d100010419","togoid":"Sgd","uniprot":"DB-0095","wikidata":"P3406"},"synonyms":null,"keywords":null,"domain":"gene","references":null,"publications":[{"pubmed":"39345624","doi":"10.1101/2024.09.16.613348","pmc":"PMC11430078","title":"Saccharomyces Genome Database: Advances in Genome Annotation, Expanded Biochemical Pathways, and Other Key Enhancements","year":2024},{"pubmed":"26989152","doi":"10.1093/database/baw020","pmc":"PMC4795930","title":"From one to many: expanding the Saccharomyces cerevisiae reference genome panel","year":2016},{"pubmed":"25781462","doi":"10.1371/journal.pone.0120671","pmc":"PMC4363492","title":"AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae","year":2015},{"pubmed":"25997651","doi":"10.1002/dvg.22862","pmc":"PMC4545726","title":"Biocuration at the Saccharomyces genome database","year":2015},{"pubmed":"26578556","doi":"10.1093/nar/gkv1250","pmc":"PMC4702884","title":"The Saccharomyces Genome Database Variant Viewer","year":2015},{"pubmed":"26631132","doi":"10.1101/pdb.top083840","pmc":"PMC5673599","title":"The Saccharomyces Genome Database: A Tool for Discovery","year":2015},{"pubmed":"26631124","doi":"10.1101/pdb.prot088906","pmc":"PMC5673598","title":"The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining","year":2015},{"pubmed":"26631123","doi":"10.1101/pdb.prot088898","pmc":"PMC5673601","title":"The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant Phenotypes","year":2015},{"pubmed":"26631126","doi":"10.1101/pdb.prot088922","pmc":"PMC5673602","title":"The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations","year":2015},{"pubmed":"26631125","doi":"10.1101/pdb.prot088914","pmc":"PMC5673600","title":"The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component","year":2015},{"pubmed":"25052702","doi":"10.1093/database/bau075","pmc":"PMC4105709","title":"Standardized description of scientific evidence using the Evidence Ontology (ECO)","year":2014},{"pubmed":"25313161","doi":"10.1093/nar/gku975","pmc":"PMC4384031","title":"The complex portal--an encyclopaedia of macromolecular complexes","year":2014},{"pubmed":"24374639","doi":"10.1534/g3.113.008995","pmc":"PMC3962479","title":"The reference genome sequence of Saccharomyces cerevisiae: then and now","year":2014},{"pubmed":"23842463","doi":"10.1093/database/bat054","pmc":"PMC3706743","title":"A guide to best practices for Gene Ontology (GO) manual annotation","year":2013},{"pubmed":"24265222","doi":"10.1093/nar/gkt1158","pmc":"PMC3965049","title":"Saccharomyces genome database provides new regulation data","year":2013},{"pubmed":"23487186","doi":"10.1093/database/bat012","pmc":"PMC3595989","title":"The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database","year":2013},{"pubmed":"23396302","doi":"10.1093/database/bat004","pmc":"PMC3567487","title":"The YeastGenome app: the Saccharomyces Genome Database at your fingertips","year":2013},{"pubmed":"22434826","doi":"10.1093/database/bar057","pmc":"PMC3308148","title":"Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report","year":2012},{"pubmed":"22434836","doi":"10.1093/database/bas001","pmc":"PMC3308158","title":"CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations","year":2012},{"pubmed":"22434830","doi":"10.1093/database/bar062","pmc":"PMC3308152","title":"YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit","year":2012},{"pubmed":"22110037","doi":"10.1093/nar/gkr1029","pmc":"PMC3245034","title":"Saccharomyces Genome Database: the genomics resource of budding yeast","year":2011},{"pubmed":"21411447","doi":"10.1093/database/bar004","pmc":"PMC3067894","title":"Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study","year":2011},{"pubmed":"19577472","doi":"10.1016/j.tim.2009.04.005","pmc":"PMC3057094","title":"Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns","year":2009},{"pubmed":"20157474","doi":"10.1093/database/bap001","pmc":"PMC2790299","title":"New mutant phenotype data curation system in the Saccharomyces Genome Database","year":2009},{"pubmed":"19906697","doi":"10.1093/nar/gkp917","pmc":"PMC2808950","title":"Saccharomyces Genome Database provides mutant phenotype data","year":2009},{"pubmed":null,"doi":"10.1002/9780470089941.et1104s01","pmc":null,"title":"Using Model Organism Databases (MODs)","year":2009},{"pubmed":"17982175","doi":"10.1093/nar/gkm909","pmc":"PMC2238894","title":"Gene Ontology annotations at SGD: new data sources and annotation methods","year":2007},{"pubmed":"17142221","doi":"10.1093/nar/gkl931","pmc":"PMC1669759","title":"Expanded protein information at SGD: new pages and proteome browser","year":2006},{"pubmed":"16381907","doi":"10.1093/nar/gkj117","pmc":"PMC1347479","title":"Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome","year":2006},{"pubmed":"17001629","doi":"10.1002/yea.1400","pmc":"PMC3040122","title":"Saccharomyces cerevisiae S288C genome annotation: a working hypothesis","year":2006},{"pubmed":"15608219","doi":"10.1093/nar/gki023","pmc":"PMC539977","title":"Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)","year":2005},{"pubmed":"14681421","doi":"10.1093/nar/gkh033","pmc":"PMC308767","title":"Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms","year":2004},{"pubmed":"15153302","doi":"10.1093/bib/5.1.9","pmc":"PMC3037832","title":"Saccharomyces genome database: underlying principles and organisation","year":2004},{"pubmed":"12519985","doi":"10.1093/nar/gkg054","pmc":"PMC165501","title":"Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins","year":2003},{"pubmed":"12073322","doi":"10.1016/s0076-6879(02)50972-1","pmc":null,"title":"Saccharomyces Genome Database","year":2002},{"pubmed":"11752257","doi":"10.1093/nar/30.1.69","pmc":"PMC99086","title":"Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)","year":2002},{"pubmed":"11125055","doi":"10.1093/nar/29.1.80","pmc":"PMC29796","title":"Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data","year":2001},{"pubmed":"10592186","doi":"10.1093/nar/28.1.77","pmc":"PMC102447","title":"Integrating functional genomic information into the Saccharomyces genome database","year":2000},{"pubmed":"9847146","doi":"10.1093/nar/27.1.74","pmc":"PMC148101","title":"Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure","year":1999},{"pubmed":"9851918","doi":"10.1126/science.282.5396.2022","pmc":"PMC3057080","title":"Comparison of the complete protein sets of worm and yeast: orthology and divergence","year":1998},{"pubmed":"9885151","doi":"10.1002/(sici)1097-0061(199812)14:16<1453::aid-yea348>3.0.co;2-g","pmc":"PMC3037831","title":"Expanding yeast knowledge online","year":1998},{"pubmed":"9399804","doi":"10.1093/nar/26.1.73","pmc":"PMC147204","title":"SGD: Saccharomyces Genome Database","year":1998},{"pubmed":"9169866","doi":null,"pmc":"PMC3057085","title":"Genetic and physical maps of Saccharomyces cerevisiae","year":1997},{"pubmed":"9159100","doi":"10.1073/pnas.94.11.5506","pmc":"PMC34160","title":"Molecular linguistics: extracting information from gene and protein sequences","year":1997},{"pubmed":"9297238","doi":"10.1126/science.277.5330.1259","pmc":"PMC3039837","title":"Yeast as a model organism","year":1997},{"pubmed":"7660459","doi":null,"pmc":null,"title":"Genetic nomenclature guide. Saccharomyces cerevisiae","year":1995},{"pubmed":"9399804","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22110037","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681421","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"39530598","doi":"10.1093/genetics/iyae185","pmc":null,"title":null,"year":null},{"pubmed":"9399804","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22110037","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"14681421","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"39530598","doi":"10.1093/genetics/iyae185","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://cherrylab.stanford.edu/sites/g/files/sbiybj20496/files/styles/card_1900x950/public/media/image/sgd-banner-higher_res_0.png","miriam":{"description":"The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.","examples":["S000003909"],"extras":{"miriam_id":"00000023","namespaceEmbeddedInLui":false},"homepage":"https://www.yeastgenome.org/","name":"SGD","pattern":"^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$","prefix":"sgd","providers":[{"code":"agr","description":"SGD through the Alliance of Genome Resources","homepage":"https://www.alliancegenome.org","name":"SGD through the Alliance of Genome Resources","uri_format":"https://www.alliancegenome.org/gene/SGD:$1"},{"code":"","description":"Bio2RDF","homepage":"http://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sgd:$1"}],"status":"active","uri_format":"https://www.yeastgenome.org/locus/$1"},"n2t":{"description":"The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.","examples":["S000003909"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.yeastgenome.org/","name":"SGD","pattern":"^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$","prefix":"sgd","uri_format":"https://www.yeastgenome.org/locus/$1"},"prefixcommons":{"description":"The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. SGD contains a variety of biological information and tools with which to search and analyze it.","examples":["S000006169"],"homepage":"http://www.yeastgenome.org/","keywords":["eukaryotic","genome","nucleotide"],"name":"Saccharomyces Genome Database","pattern":"^S\\d+$","prefix":"sgd","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sgd:$1"}],"publications":[{"pubmed":"14681421"}],"uri_format":"http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$1"},"wikidata":{"description":"identifier for a genetic element in the Saccharomyces Genome Database","examples":["S000000944","S000001582","S000007279"],"homepage":"http://www.yeastgenome.org","name":"Saccharomyces Genome Database ID","pattern":"^S\\d{9}$","prefix":"P3406","uri_format":"http://www.yeastgenome.org/locus/$1/overview"},"wikidata_entity":null,"go":{"homepage":"http://www.yeastgenome.org/","name":"Saccharomyces Genome Database","prefix":"SGD","prefix_synonyms":["SGDID"],"uri_format":"https://www.yeastgenome.org/search?q=$1&is_quick=true"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["L0000470"],"homepage":"http://www.yeastgenome.org/","name":"Saccharomyces Genome Database","prefix":"SGD"},"uniprot":{"homepage":"https://www.yeastgenome.org/","keywords":["Organism-specific databases"],"name":"Saccharomyces Genome Database","prefix":"DB-0095","publications":[{"doi":"10.1093/genetics/iyae185","pubmed":"39530598"}],"short_names":["SGD"],"uri_format":"https://www.yeastgenome.org/locus/$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SGD","uri_format":"https://www.yeastgenome.org/locus/$1"},"edam":{"description":"Identifier of an entry from the Saccharomyces genome database (SGD).","name":"SGD","prefix":"2632"},"re3data":{"description":"The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms.","homepage":"https://www.yeastgenome.org","license":{"name":"other"},"name":"Saccharomyces Genome Database","prefix":"r3d100010419","prefix_synonyms":["SGD"],"xrefs":{"doi":"10.17616/R3N313","nif":"0000-03456","omics":"01661"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and analysis tools based on genes, sequences, and functions, as well as information related to citations, and the community. The information is updated and maintained by curators. It enables users to find functional relationships to sequences and gene products of fungi and higher organisms can also be verified. The SGD also maintains all gene names for budding yeast through the gene Name Registry.","examples":["S000003096","S000003789","S000005770","S000028467","S000006377","S000001180","S000003769","S000001459","S000004428","S000006021"],"keywords":["Gene"],"name":"SGD","pattern":"^(?S\\d{9})$","prefix":"Sgd","uri_format":"http://identifiers.org/sgd/$1","xrefs":{"integbio":"nbdc00202"}},"integbio":{"description":"This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and analysis tools based on genes, sequences, and functions, as well as information related to citations, and the community. The information is updated and maintained by curators. It enables users to find functional relationships to sequences and gene products of fungi and higher organisms can also be verified. The SGD also maintains all gene names for budding yeast through the gene Name Registry.","homepage":"http://www.yeastgenome.org/","keywords":["Genome/Gene","RNA","Protein","Organism","Bioresource","Ontology/Terminology/Nomenclature","Sequence","Expression","Interaction/Pathway","Image/Movie","Bibliography/Documents"],"name":"Saccharomyces Genome Database","prefix":"nbdc00202","publications":[{"pubmed":"9399804"},{"pubmed":"22110037"}],"short_names":["SGD"],"status":"active","xrefs":{"fairsharing":"biodbcore-000100"}},"pathguide":null,"tib":null},"sgd.pathways":{"prefix":"sgd.pathways","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Karen R. Christie","orcid":"0000-0001-5501-853X","email":"Karen.Christie@jax.org","github":"krchristie"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"sgd","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SGD.PATHWAYS","miriam":"sgd.pathways","n2t":"sgd.pathways","prefixcommons":"sgd.pathways"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39345624","doi":"10.1101/2024.09.16.613348","pmc":"PMC11430078","title":"Saccharomyces Genome Database: Advances in Genome Annotation, Expanded Biochemical Pathways, and Other Key Enhancements","year":2024},{"pubmed":"14681421","doi":"10.1093/nar/gkh033","pmc":"PMC308767","title":"Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms","year":2004}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).","examples":["PWY3O-214"],"extras":{"miriam_id":"00000057","namespaceEmbeddedInLui":false},"homepage":"http://pathway.yeastgenome.org/","name":"Saccharomyces genome database pathways","pattern":"^PWY\\w{2}\\-\\d{3}$","prefix":"sgd.pathways","status":"active","uri_format":"http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"},"n2t":{"description":"Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).","examples":["PWY3O-214"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://pathway.yeastgenome.org/","name":"Saccharomyces cerevisiae pathways at SGD.","pattern":"^PWY\\w{2}\\-\\d{3}$","prefix":"sgd.pathways","uri_format":"http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"},"prefixcommons":{"description":"Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).","examples":["PWY3O-214"],"homepage":"http://www.yeastgenome.org/","keywords":["genome","pathway","sequence"],"name":"Saccharomyces genome database pathways","pattern":"^PWY\\w{2}\\-\\d{3}$","prefix":"sgd.pathways","prefix_synonyms":["spt"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sgd.pathways:$1"}],"publications":[{"pubmed":"14681421"}],"uri_format":"http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SGD.PATHWAYS","uri_format":"http://identifiers.org/sgd.pathways/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sgn":{"prefix":"sgn","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Lukas A. Mueller","orcid":"0000-0001-8640-1750","email":"lam87@cornell.edu","github":"lukasmueller"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SGN","go":"SGN","integbio":"nbdc02414","miriam":"sgn","n2t":"sgn","ncbi":"SGN","pathguide":"433","prefixcommons":"sgn","re3data":"r3d100012078"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25428362","doi":"10.1093/nar/gku1195","pmc":"PMC4383978","title":"The Sol Genomics Network (SGN)--from genotype to phenotype to breeding","year":2014},{"pubmed":"20935049","doi":"10.1093/nar/gkq866","pmc":"PMC3013765","title":"The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl","year":2010},{"pubmed":"25428362","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20935049","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25428362","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20935049","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://solgenomics.net/documents/img/sgn_transparent_logo.png","miriam":{"description":"The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.","examples":["0001"],"extras":{"miriam_id":"00000185","namespaceEmbeddedInLui":false},"homepage":"http://solgenomics.net/","name":"Sol Genomics Network","pattern":"^\\d+$","prefix":"sgn","status":"active","uri_format":"http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"},"n2t":{"description":"The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.","examples":["0001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://solgenomics.net/","name":"Sol Genomics Network at Boyce Thompson Institute for Plant Research","pattern":"^\\d+$","prefix":"sgn","uri_format":"http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"},"prefixcommons":{"description":"The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.","examples":["1"],"homepage":"http://www.sgn.cornell.edu","keywords":["pathway","small molecule","genome","plant"],"name":"Sol Genomics Network","pattern":"^\\d+$","prefix":"sgn","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sgn:$1"}],"publications":[{"pubmed":"20935049"}],"uri_format":"http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"https://www.sgn.cornell.edu/","name":"Sol Genomics Network","prefix":"SGN","prefix_synonyms":["SGN_gene"],"uri_format":"http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["E553090"],"homepage":"http://www.sgn.cornell.edu","name":"SOL Genomics Network","prefix":"SGN"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SGN","uri_format":"http://identifiers.org/sgn/$1"},"edam":null,"re3data":{"description":"The Sol Genomics Network (SGN) is a clade-oriented database dedicated to the biology of the Solanaceae family which includes a large number of closely related and many agronomically important species such as tomato, potato, tobacco, eggplant, pepper, and the ornamental Petunia hybrida.\nSGN is part of the International Solanaceae Initiative (SOL), which has the long-term goal of creating a network of resources and information to address key questions in plant adaptation and diversification","homepage":"https://solgenomics.net/","name":"SOL Genomics Network","prefix":"r3d100012078","prefix_synonyms":["SGN","Solanaceae Genomics Network"],"xrefs":{"doi":"10.17616/R3FS95"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SGN is a database of genome and phenotype data for species in the Solanaceae and their close relatives. It provides genome maps and sequences, QTLs, RNA-seq, and microarray data. Users can use tools, such as BLAST, Browse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools.","homepage":"https://solgenomics.net","keywords":["Genome/Gene","cDNA/EST","Sequence","Expression","Phenotype","Method","Repository"],"name":"Sol Genomics Network","prefix":"nbdc02414","publications":[{"pubmed":"25428362"}],"short_names":["SGN"],"status":"active","xrefs":{"fairsharing":"biodbcore-000301"}},"pathguide":{"homepage":"http://solgenomics.net/","name":"Sol Genomics Network","prefix":"433","short_names":["SGN"]},"tib":null},"sh":{"prefix":"sh","name":"Shapes Constraint Language","description":"A language for validating RDF graphs against a set of conditions","pattern":null,"uri_format":"http://www.w3.org/ns/shacl#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/TR/shacl/","repository":null,"contact":{"name":"Simon Cox","orcid":"0000-0002-3884-3420","email":"dr.shorthair@pm.me","github":"dr-shorthair"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"NodeShape","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://triplydb.com/w3c/sh/download.trig.gz","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"sh","tib":"sh","zazuko":"sh"},"synonyms":["shacl"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"sh","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This vocabulary defines terms used in SHACL, the W3C Shapes Constraint Language.","homepage":"https://www.w3.org/TR/shacl/","keywords":["Quality","W3C Rec"],"name":"W3C Shapes Constraint Language (SHACL) Vocabulary","prefix":"sh","uri_format":"http://www.w3.org/ns/shacl#$1"},"zazuko":{"prefix":"sh","uri_format":"http://www.w3.org/ns/shacl#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://www.w3.org/ns/shacl.rdf"}],"description":"This vocabulary defines terms used in SHACL, the W3C Shapes Constraint Language.","homepage":"https://www.w3.org/TR/2017/REC-shacl-20170720/","keywords":["NFDI4ING","computer science"],"name":"W3C Shapes Constraint Language (SHACL) Vocabulary","prefix":"sh","tracker":"https://github.com/w3c/data-shapes/issues","uri_format":"http://www.w3.org/ns/shacl#$1"}},"shareloc":{"prefix":"shareloc","name":null,"description":null,"pattern":"^\\d{6}$","uri_format":"https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://shareloc.xyz","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"000004","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"ols":"shareloc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/imodpasteur/ShareLoc.XYZ/ontology/shareloc.owl"}],"description":"ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.","name":"ShareLoc","prefix":"shareloc"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sharkipedia.species":{"prefix":"sharkipedia.species","name":"Sharkipedia Species","description":"Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.","pattern":"^\\d+$","uri_format":"https://www.sharkipedia.org/species/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.sharkipedia.org/","repository":"https://github.com/sharkipedia/sharkipedia","contact":{"name":"Christopher Mull","orcid":"0000-0003-1710-8256","email":"creeas@gmail.com","github":"creeas"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"983","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"sharkipedia","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata.entity":"Q113989515"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"36088355","doi":"10.1038/s41597-022-01655-1","pmc":"PMC9464254","title":"Sharkipedia: a curated open access database of shark and ray life history traits and abundance time-series","year":2022}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":607,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sharkipedia.trait":{"prefix":"sharkipedia.trait","name":"Sharkipedia Trait","description":"Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.","pattern":"^\\d+$","uri_format":"https://www.sharkipedia.org/traits/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.sharkipedia.org/","repository":"https://github.com/sharkipedia/sharkipedia","contact":{"name":"Christopher Mull","orcid":"0000-0003-1710-8256","email":"creeas@gmail.com","github":"creeas"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"13","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"sharkipedia","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata.entity":"Q113989515"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"36088355","doi":"10.1038/s41597-022-01655-1","pmc":"PMC9464254","title":"Sharkipedia: a curated open access database of shark and ray life history traits and abundance time-series","year":2022}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":607,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sharkipedia.trend":{"prefix":"sharkipedia.trend","name":"Sharkipedia Trend","description":"Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.","pattern":"^\\d+$","uri_format":"https://www.sharkipedia.org/trends/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.sharkipedia.org/","repository":"https://github.com/sharkipedia/sharkipedia","contact":{"name":"Christopher Mull","orcid":"0000-0003-1710-8256","email":"creeas@gmail.com","github":"creeas"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3447","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"sharkipedia","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata.entity":"Q113989515"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"36088355","doi":"10.1038/s41597-022-01655-1","pmc":"PMC9464254","title":"Sharkipedia: a curated open access database of shark and ray life history traits and abundance time-series","year":2022}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":607,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sheepqtldb":{"prefix":"sheepqtldb","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":"qtldb","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SHEEPQTLDB","miriam":"sheepqtldb","n2t":"sheepqtldb","prefixcommons":"sheepqtldb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.","examples":["19803"],"extras":{"miriam_id":"00000507","namespaceEmbeddedInLui":false},"homepage":"https://www.animalgenome.org/QTLdb","name":"Animal Genome Sheep QTL","pattern":"^\\d+$","prefix":"sheepqtldb","status":"active","uri_format":"https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"},"n2t":{"description":"The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.","examples":["19803"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.animalgenome.org/cgi-bin/QTLdb/OA/index","name":"Animal QTL Sheep at Iowa State University","pattern":"^\\d+$","prefix":"sheepqtldb","uri_format":"http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$1"},"prefixcommons":{"description":"This Sheep Quantitative Trait Locus (QTL) database (Sheep QTLdb) has gathered all sheep QTL data published during the past 10+ years. The database and its peripheral tools make it possible to compare, confirm and locate on sheep chromosomes the most feasible location for genes responsible for quantitative trait important to sheep production.","examples":["66"],"homepage":"http://www.animalgenome.org/cgi-bin/QTLdb/OA/index","keywords":["DNA","genome"],"name":"Sheep Quantitative Trait Locus database","pattern":"^\\d+$","prefix":"sheepqtldb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sheepqtldb:$1"}],"uri_format":"http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SHEEPQTLDB","uri_format":"http://identifiers.org/sheepqtldb/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"shex":{"prefix":"shex","name":"Shape Expression Vocabulary","description":"The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.","pattern":"^\\w+$","uri_format":"http://www.w3.org/ns/shex#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.w3.org/ns/shex#","repository":"https://github.com/shexspec/shexspec.github.io","contact":{"name":"Gregg Kellogg","orcid":null,"email":"gregg@greggkellogg.net","github":"gkellogg"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"TripleExpression","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://www.w3.org/ns/shex.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"zazuko":"shex"},"synonyms":null,"keywords":["metadata","rdf","semantic web"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"shex","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":{"prefix":"shex","uri_format":"http://www.w3.org/ns/shex#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"shibase":{"prefix":"shibase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"shibase"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format.","examples":["SDY2614"],"homepage":"http://www.mgc.ac.cn/ShiBASE/","keywords":["genome"],"name":"ShiBASE","pattern":"^[A-Z]+\\d+$","prefix":"shibase","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/shibase:$1"}],"uri_format":"http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"shnex":{"prefix":"shnex","name":"SHACL Node Expression","description":"A vocabulary used in tandem with SHACL for representing node shapes","pattern":null,"uri_format":"http://www.w3.org/ns/shacl-node-expr#$1","uri_format_resolvable":null,"rdf_uri_format":"http://www.w3.org/ns/shacl-node-expr#$1","providers":null,"homepage":"https://www.w3.org/TR/shacl12-node-expr/","repository":"https://github.com/w3c/data-shapes","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"instancesOf","example_extras":null,"example_decoys":null,"license":"W3C-20150513","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"shsh":{"prefix":"shsh","name":"SHACL in SHACL","description":"This shapes graph can be used to validate SHACL shapes graphs against a subset of the syntax rules.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.w3.org/ns/shacl-shacl","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ListShape","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://www.w3.org/ns/shacl-shacl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"zazuko":"shsh"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":{"prefix":"shsh","uri_format":"http://www.w3.org/ns/shacl-shacl#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sibo":{"prefix":"sibo","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000509","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SIBO","biocontext":"SIBO","bioportal":"SIBO","ecoportal":"SIBO","fairsharing":"FAIRsharing.q09hck","obofoundry":"sibo","ols":"sibo","ontobee":"SIBO","wikidata.entity":"Q114677952"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sibo.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/sibo.obo"}],"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall","orcid":"0000-0002-6601-2165"},"description":"Social Behavior in insects","domain":"biological systems","homepage":"https://github.com/obophenotype/sibo","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Social Insect Behavior Ontology","preferred_prefix":"SIBO","prefix":"sibo","repository":"https://github.com/obophenotype/sibo","status":"orphaned"},"bioportal":{"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall"},"description":"Social behavior in insects.","homepage":"https://github.com/obophenotype/sibo","name":"Social Insect Behavior Ontology","prefix":"SIBO"},"ecoportal":{"contact":{"email":"cjmungall@lbl.gov","name":"Chris Mungall"},"description":"The Social Insect Behavior Ontology (SIBO) was created by Chris Smith. This ontology will eventually be integrated into the NBO ando contains collected terms for Chemical, Anatomy, Behavior, Species. The most developed use cases are for Pogonomyrmex harvester ant foraging and apis mellifera honeybee colony defense.","homepage":"https://github.com/obophenotype/sibo","license":{"name":"CC-BY-3.0"},"name":"Social Insect Behavior Ontology","prefix":"SIBO","repository":"https://github.com/obophenotype/sibo","version":"1.2"},"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/sibo.owl"}],"description":"Social Behavior in insects","homepage":"https://github.com/obophenotype/sibo","name":"Social Insect Behavior Ontology","prefix":"sibo","tracker":"https://github.com/obophenotype/sibo/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SIBO/3/sibo.owl"}],"description":"Social Behavior in insects","homepage":"https://github.com/obophenotype/sibo","name":"Social Insect Behavior Ontology","prefix":"SIBO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Social Insect Behavior Ontology","prefix":"SIBO"},"cheminf":null,"fairsharing":{"description":"The Social Inset Behavior Ontology mostly contains terms related to Chemical, Anatomy, Behavior, Species. The most developed use cases are for Pogonomyrmex harvester ant foraging and apis mellifera honeybee colony defense.\n","homepage":"https://github.com/obophenotype/sibo","keywords":["Biology"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Social Inset Behavior Ontology","prefix":"FAIRsharing.q09hck","short_names":["SIBO"]},"biocontext":{"prefix":"SIBO","uri_format":"http://purl.obolibrary.org/obo/SIBO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sider.drug":{"prefix":"sider.drug","name":null,"description":null,"pattern":null,"uri_format":"http://sideeffects.embl.de/drugs/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SIDER.DRUG","miriam":"sider.drug","n2t":"sider.drug"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.","examples":["2244"],"extras":{"miriam_id":"00000435","namespaceEmbeddedInLui":false},"homepage":"http://sideeffects.embl.de/","name":"SIDER Drug","pattern":"^\\d+$","prefix":"sider.drug","status":"active","uri_format":"http://sideeffects.embl.de/drugs/$1/"},"n2t":{"description":"SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.","examples":["2244"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sideeffects.embl.de/","name":"SIDER Drug v2 at EMBL (Heidelberg)","pattern":"^\\d+$","prefix":"sider.drug","uri_format":"http://sideeffects.embl.de/drugs/$1/"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SIDER.DRUG","uri_format":"http://identifiers.org/sider.drug/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sider.effect":{"prefix":"sider.effect","name":null,"description":null,"pattern":null,"uri_format":"http://sideeffects.embl.de/se/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"umls","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SIDER.EFFECT","miriam":"sider.effect","n2t":"sider.effect"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.","examples":["C0017565"],"extras":{"miriam_id":"00000436","namespaceEmbeddedInLui":false},"homepage":"http://sideeffects.embl.de/","name":"SIDER Side Effect","pattern":"^C\\d+$","prefix":"sider.effect","status":"active","uri_format":"http://sideeffects.embl.de/se/$1/"},"n2t":{"description":"SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.","examples":["C0017565"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sideeffects.embl.de/","name":"SIDER Side Effect v2 at EMBL (Heidelberg)","pattern":"^C\\d+$","prefix":"sider.effect","uri_format":"http://sideeffects.embl.de/se/$1/"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SIDER.EFFECT","uri_format":"http://identifiers.org/sider.effect/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sigmaaldrich":{"prefix":"sigmaaldrich","name":"Sigma Aldrich","description":"Sigma Aldrich is a life sciences supply vendor.","pattern":null,"uri_format":"https://www.sigmaaldrich.com/US/en/product/sigma/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.sigmaaldrich.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"HPA000698","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"Sigma-Aldrich","pathguide":"236"},"synonyms":null,"keywords":["biology","chemistry","life sciences","vendor"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":216,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line collections (Providers)","homepage":"https://www.sigmaaldrich.com","name":"Sigma-Aldrich cell line products","prefix":"Sigma-Aldrich","uri_format":"https://www.sigmaaldrich.com/catalog/product/sigma/$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.sigmaaldrich.com/Area_of_Interest/Life_Science/Cell_Signaling/Scientific_Resources/Pathway_Slides___Charts.html","name":"Cell Signalling Pathway Slides & Charts","prefix":"236","short_names":["SIGMA-ALDRICH"]},"tib":null},"signaling-gateway":{"prefix":"signaling-gateway","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Kenan Azam","orcid":"0000-0001-7016-8624","email":"kenan@ucsd.edu","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SIGNALING-GATEWAY","miriam":"signaling-gateway","n2t":"signaling-gateway","pathguide":"87","prefixcommons":"signaling-gateway"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"21505029","doi":"10.1093/bioinformatics/btr190","pmc":"PMC3106186","title":"Signaling gateway molecule pages--a data model perspective","year":2011},{"pubmed":"17965093","doi":"10.1093/nar/gkm907","pmc":"PMC2238911","title":"The Molecule Pages database","year":2007},{"pubmed":"12478304","doi":"10.1038/nature01307","pmc":null,"title":"The Molecule Pages database","year":2002},{"pubmed":"17965093","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12478304","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21505029","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17965093","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12478304","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"21505029","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Signaling Gateway provides information on mammalian proteins involved in cellular signaling.","examples":["A001094"],"extras":{"miriam_id":"00000045","namespaceEmbeddedInLui":false},"homepage":"http://www.signaling-gateway.org/molecule","name":"Signaling Gateway","pattern":"^A\\d{6}$","prefix":"signaling-gateway","status":"deprecated","uri_format":"http://www.signaling-gateway.org/molecule/query?afcsid=$1"},"n2t":{"description":"The Signaling Gateway provides information on mammalian proteins involved in cellular signaling.","examples":["A001094"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.signaling-gateway.org/molecule","name":"Signaling Gateway Molecule Pages","pattern":"A\\d{6}$","prefix":"signaling-gateway","uri_format":"http://www.signaling-gateway.org/molecule/query?afcsid=$1"},"prefixcommons":{"description":"The Signaling Gateway provides information on mammalian proteins involved in cellular signaling.","examples":["A001094"],"homepage":"http://www.signaling-gateway.org/molecule/","keywords":["pathway","protein","small molecule"],"license":{"name":"http://www.signaling-gateway.org/copyright/afcs.html","url":"http://www.signaling-gateway.org/copyright/afcs.html"},"name":"The Signaling Gateway","pattern":"^A\\d{6}$","prefix":"signaling-gateway","prefix_synonyms":["afcs","sgmp"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/signaling-gateway:$1"}],"publications":[{"pubmed":"17965093"},{"pubmed":"12478304"},{"pubmed":"21505029"}],"uri_format":"http://www.signaling-gateway.org/molecule/query?afcsid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SIGNALING-GATEWAY","uri_format":"http://identifiers.org/signaling-gateway/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.signaling-gateway.org/molecule/","keywords":["BioPAX","SBML"],"name":"UCSD-Nature Signaling Gateway Molecule Pages","prefix":"87","short_names":["Signaling Gateway"]},"tib":null},"signor":{"prefix":"signor","name":"Signaling Network Open Resource","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SIGNOR-C41","example_extras":null,"example_decoys":null,"license":"CC-BY-NC-4.0","version":null,"part_of":null,"part_of_database":"signor","provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/signor/signor.owl","download_obo":"https://w3id.org/biopragmatics/resources/signor/signor.obo","download_json":"https://w3id.org/biopragmatics/resources/signor/signor.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"signor","pathguide":"599","prefixcommons":"signor","uniprot":"DB-0206"},"synonyms":["SIGNOR"],"keywords":null,"domain":"protein complex","references":null,"publications":[{"pubmed":"36243968","doi":"10.1093/nar/gkac883","pmc":"PMC9825604","title":"SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update","year":2022},{"pubmed":"26467481","doi":"10.1093/nar/gkv1048","pmc":"PMC4702784","title":"SIGNOR: a database of causal relationships between biological entities","year":2015}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://signor.uniroma2.it/img/signor_logo_noWhite.png","miriam":{"description":"SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.","examples":["SIGNOR-C2"],"extras":{"miriam_id":"00000808","namespaceEmbeddedInLui":false},"homepage":"https://signor.uniroma2.it/","name":"SIGNOR","pattern":"^SIGNOR\\-[A-Z]+\\d+$","prefix":"signor","status":"active","uri_format":"https://signor.uniroma2.it/relation_result.php?id=$1"},"n2t":null,"prefixcommons":{"description":"SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature","examples":["SIGNOR-C225"],"homepage":"https://signor.uniroma2.it/","keywords":["protein","interactions"],"name":"The SIGnalling Network Open Resource","prefix":"signor","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/signor:$1"}],"publications":[{"pubmed":"31665520"}],"uri_format":"https://signor.uniroma2.it/relation_result.php?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://signor.uniroma2.it/","keywords":["Enzyme and pathway databases"],"name":"SIGNOR Signaling Network Open Resource","prefix":"DB-0206","publications":[{"doi":"10.1093/nar/gkac883","pubmed":"36243968"}],"short_names":["SIGNOR"],"uri_format":"https://signor.uniroma2.it/relation_result.php?id=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://signor.uniroma2.it/","keywords":["SBML"],"name":"The SIGnaling Network Open Resource","prefix":"599","short_names":["SIGNOR"]},"tib":null},"signor.relation":{"prefix":"signor.relation","name":"SIGNOR Relation","description":"Identifiers for relationships between proteins and complexes, along with their type and provenance","pattern":"^SIGNOR-\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://signor.uniroma2.it","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SIGNOR-252737","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"signor","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["protein-protein interactions"],"domain":"relationship","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Currently, you can put a SIGNOR relation ID into the main page search box and it will resolve, but there is not currently a way to resolve them via a URL pattern","contributor":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"benjamin_gyori@hms.harvard.edu","github":"bgyori"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":604,"logo":"https://signor.uniroma2.it/img/signor_logo_noWhite.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"silva.taxon":{"prefix":"silva.taxon","name":"SILVA Taxon","description":"SILVA is a resource of aligned ribosomal RNA (rRNA) gene sequences for Bacteria, Archaea, and Eukaryotes.\n\nIt assigns internal, auto-incremented integer identifiers to taxa. However, these identifiers are not persistent nor unique - if the label for a taxon is changed, it assigned a new identifier and the old identifier is removed.","pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.arb-silva.de","repository":null,"contact":{"name":"Lorenz Reimer","orcid":"0000-0002-7805-0660","email":"lorenz.reimer@dsmz.de","github":null},"contact_extras":null,"contact_group_email":"contact@arb-silva.de","contact_page":null,"owners":null,"example":"11084","example_extras":null,"example_decoys":null,"license":"CC-BY-SA-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24293649","doi":"10.1093/nar/gkt1209","pmc":"PMC3965112","title":"The SILVA and \"All-species Living Tree Project (LTP)\" taxonomic frameworks","year":2014},{"pubmed":"23193283","doi":"10.1093/nar/gks1219","pmc":"PMC3531112","title":"The SILVA ribosomal RNA gene database project: improved data processing and web-based tools","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Jose P. Faria","orcid":"0000-0001-9302-7250","email":"jplfaria@anl.gov","github":"jplfaria"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1306,"logo":"https://www.arb-silva.de/fileadmin/graphics_general/main/dissemination/silva-sticker-1_2_ext_33.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sio":{"prefix":"sio","name":null,"description":null,"pattern":"^\\d{6}$","uri_format":"https://semanticscience.org/resource/SIO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/micheldumontier/semanticscience","contact":{"name":"Michel Dumontier","orcid":"0000-0003-4727-9435","email":"michel.dumontier@gmail.com","github":"micheldumontier"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"000912","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"SIO","banana_peel":"_","deprecated":null,"mappings":{"aberowl":"SIO","agroportal":"SIO","biocontext":"SIO","biolink":"SIO","bioportal":"SIO","fairsharing":"FAIRsharing.dpkb5f","lov":"sio","miriam":"sio","ols":"sio","ontobee":"SIO","tib":"sio","togoid":"Sio"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24602174","doi":"10.1186/2041-1480-5-14","pmc":"PMC4015691","title":"The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery","year":2014}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"SIO","mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.","examples":["SIO_000276"],"extras":{"miriam_id":"00000851","namespaceEmbeddedInLui":false},"homepage":"https://www.ebi.ac.uk/ols4/ontologies/sio","name":"Semanticscience Integrated Ontology","pattern":"^SIO_\\d{6,6}$","prefix":"sio","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"michel.dumontier@gmail.com","name":"Michel Dumontier"},"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.","homepage":"http://sio.semanticscience.org","name":"Semanticscience Integrated Ontology","prefix":"SIO","publications":[{"url":"http://sio.semanticscience.org"}],"version":"1.59"},"ecoportal":null,"agroportal":{"contact":{"email":"michel.dumontier@gmail.com","name":"Michel Dumontier"},"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes. This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. website: http://semanticscience.org email: sio-ontology@googlegroups.com mailing list: http://groups.google.com/group/sio-ontology , processes and their attributes. This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.","extras":{"example_uri":"http://semanticscience.org/resource/SIO_000837"},"homepage":"http://sio.semanticscience.org/","license":{"name":"CC-BY-4.0"},"name":"Semanticscience Integrated Ontology","prefix":"SIO","publications":[{"url":"http://www.jbiomedsem.com/content/5/1/14"}],"repository":"https://github.com/micheldumontier/semanticscience","version":"1.59"},"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl"}],"contact":{"email":"sio-ontology@googlegroups.com"},"description":"The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.","extras":{"version.iri":"http://semanticscience.org/ontology/sio/v1.59/sio-release.owl"},"homepage":"https://github.com/micheldumontier/semanticscience","name":"Semanticscience Integrated Ontology","prefix":"sio","uri_format":"http://semanticscience.org/resource/SIO_$1","version":"1.59"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SIO/94/sio.owl"}],"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.","homepage":"http://sio.semanticscience.org","name":"Semanticscience Integrated Ontology","prefix":"SIO","version":"1.59"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"SIO","uri_format":"http://semanticscience.org/resource/SIO_$1"},"cellosaurus":null,"ontobee":{"keywords":["ontology"],"name":"Semanticscience Integrated Ontology","prefix":"SIO"},"cheminf":null,"fairsharing":{"contact":{"email":"michel.dumontier@gmail.com","name":"Michel Dumontier","orcid":"0000-0003-4727-9435"},"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.","homepage":"https://github.com/MaastrichtU-IDS/semanticscience","keywords":["Natural Science","Subject Agnostic","Knowledge representation"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Semanticscience Integrated Ontology","prefix":"FAIRsharing.dpkb5f","publications":[{"doi":"10.1186/2041-1480-5-14","pubmed":"24602174","title":"The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery","url":"http://doi.org/10.1186/2041-1480-5-14","year":2014}],"repository":"https://github.com/MaastrichtU-IDS/semanticscience/issues","short_names":["SIO"]},"biocontext":{"prefix":"SIO","uri_format":"http://semanticscience.org/resource/SIO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes. This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.","homepage":"http://semanticscience.org","keywords":["Biology"],"name":"Semanticscience Integrated Ontology","prefix":"sio","uri_format":"http://semanticscience.org/resource/$1"},"zazuko":null,"togoid":{"examples":["SIO:000008","SIO:000095","SIO:000216","SIO:000253","SIO:000628","SIO:000772","SIO:000061","SIO:000223","SIO:000300"],"keywords":["Classification"],"name":"SIO","pattern":"^SIO[:_](?\\d{6})$","prefix":"Sio","uri_format":"http://semanticscience.org/resource/SIO_$1"},"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl"}],"description":"The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.","extras":{"version.iri":"http://semanticscience.org/ontology/sio/v1.59/sio-release.owl"},"homepage":"https://github.com/MaastrichtU-IDS/semanticscience","keywords":["NFDI4ING","NFDI4CHEM","ESS"],"name":"Semanticscience Integrated Ontology (SIO)","prefix":"sio","uri_format":"http://semanticscience.org/resource/SIO_$1"}},"sioc.access":{"prefix":"sioc.access","name":"Semantically-Interlinked Online Communities Access Ontology","description":"Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on permissions and access rights.","pattern":null,"uri_format":"http://rdfs.org/sioc/access#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/access#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Permission","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/access#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.actions":{"prefix":"sioc.actions","name":"Semantically-Interlinked Online Communities Actions Ontology","description":"An ontology of predicates for actions in SIOC","pattern":null,"uri_format":"http://rdfs.org/sioc/actions#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/actions#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"DigitalArtifact","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/actions#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.argument":{"prefix":"sioc.argument","name":"Semantically-Interlinked Online Communities Argumentation Ontology","description":"A vocabulary of argumentation predicates for SIOC","pattern":null,"uri_format":"http://rdfs.org/sioc/argument#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/argument#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"decides","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/argument#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.core":{"prefix":"sioc.core","name":"Semantically-Interlinked Online Communities Core Ontology","description":"Semantically-Interlinked Online Communities, or SIOC, is an attempt to link online community sites, to use Semantic Web technologies to describe the information that communities have about their structure and contents, and to find related information and new connections between content items and other community objects. SIOC is based around the use of machine-readable information provided by these sites.","pattern":null,"uri_format":"http://rdfs.org/sioc/ns#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/ns#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Item","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/ns#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"sioc","zazuko":"sioc"},"synonyms":["sioc"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"SIOC is an ontology for describing the information in online communities.","homepage":"http://rdfs.org/sioc/spec/","keywords":["Society"],"name":"Semantically-Interlinked Online Communities","prefix":"sioc","uri_format":"http://rdfs.org/sioc/ns#$1"},"zazuko":{"prefix":"sioc","uri_format":"http://rdfs.org/sioc/ns#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.quote":{"prefix":"sioc.quote","name":"Semantically-Interlinked Online Communities Services Ontology - Quote Ontology","description":"Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining basic information on community-related web services.","pattern":null,"uri_format":"http://rdfs.org/sioc/services#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/services#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"has_service","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/services#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.swan":{"prefix":"sioc.swan","name":"Semantically-Interlinked Online Communities Services Ontology - SWAN Mapping","description":"Mappings from SIOC to SWAN, with a small number of aux terms","pattern":null,"uri_format":"http://rdfs.org/sioc/swan#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/swan#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"OnlineJournal","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/swan#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sioc.types":{"prefix":"sioc.types","name":"Semantically-Interlinked Online Communities Types Ontology","description":"Extends the SIOC Core Ontology (Semantically-Interlinked Online Communities) by defining subclasses and subproperties of SIOC terms.","pattern":null,"uri_format":"http://rdfs.org/sioc/types#$1","uri_format_resolvable":null,"rdf_uri_format":"http://rdfs.org/sioc/types#$1","providers":null,"homepage":"http://rdfs.org/sioc/spec/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AddressBook","example_extras":null,"example_decoys":null,"license":"CC-BY-1.0","version":null,"part_of":null,"part_of_database":"sioc","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://rdfs.org/sioc/types#","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"siren":{"prefix":"siren","name":"Scientific Information Retrieval and Exchange Network","description":"A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods","pattern":"^F\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.langual.org/langual_indexed_datasets.asp","repository":null,"contact":{"name":"Patrice Buche","orcid":"0000-0002-9134-5404","email":"patrice.buche@inrae.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"F11903","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"agroportal":"SIREN"},"synonyms":["SUBSET_SIREN"],"keywords":null,"domain":null,"references":["https://github.com/FoodOntology/foodon/issues/267","https://www.langual.org/download/IndexedDatasets/FDA/SIREN%20(updated).TXT"],"publications":[{"pubmed":null,"doi":"10.1093/jaoac/65.5.1268","pmc":null,"title":"SIREN: Data Base Approach to Scientific Information Handling in the Bureau of Foods, Food and Drug Administration","year":1982}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"appears in FOODON, there is no website other than the spreadsheet referenced below on langual's site","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":{"contact":{"email":"patrice.buche@inrae.fr","name":"Buche"},"description":"This ontology contains a OWL representation of SIREN food terms using Langual thesaurus. SIREN is the Scientific Information and Retrieval Exchange Network of the US Food and Drug administration.","extras":{"example_uri":"http://purl.obolibrary.org/obo/FOODON_03306963"},"name":"SIREN Food Terms","prefix":"SIREN"},"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sisu":{"prefix":"sisu","name":"Sequencing Initiative Suomi","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SISU","miriam":"sisu","n2t":"sisu"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26030606","doi":"10.1371/journal.pone.0128524","pmc":"PMC4452275","title":"Targeted resequencing of the pericentromere of chromosome 2 linked to constitutional delay of growth and puberty","year":2015},{"pubmed":"25078778","doi":"10.1371/journal.pgen.1004494","pmc":"PMC4117444","title":"Distribution and medical impact of loss-of-function variants in the Finnish founder population","year":2014}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.","examples":["17:41223048"],"extras":{"miriam_id":"00000624","namespaceEmbeddedInLui":false},"homepage":"http://www.sisuproject.fi/","name":"SISu","pattern":"^[0-9]+:[0-9]+$","prefix":"sisu","status":"active","uri_format":"http://search.sisuproject.fi/#/variant/$1"},"n2t":{"description":"The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.","examples":["17:41223048"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.sisuproject.fi/","name":"SISu","pattern":"^[0-9]+:[0-9]+$","prefix":"sisu","uri_format":"http://search.sisuproject.fi/#/variant/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SISU","uri_format":"http://identifiers.org/sisu/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sitex":{"prefix":"sitex","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Irina Medvedeva","orcid":"0000-0003-2802-8198","email":"imedvedeva@celgene.com","github":"imedvedeva-celgene"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SITEX","miriam":"sitex","n2t":"sitex","prefixcommons":"sitex"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"22139920","doi":"10.1093/nar/gkr1187","pmc":"PMC3245165","title":"SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes","year":2011},{"pubmed":"22139920","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.","examples":["1000"],"extras":{"miriam_id":"00000252","namespaceEmbeddedInLui":false},"homepage":"http://www-bionet.sscc.ru/sitex/","name":"SitEx","pattern":"^\\d+$","prefix":"sitex","status":"deprecated","uri_format":"http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"},"n2t":{"description":"SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.","examples":["1000"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www-bionet.sscc.ru/sitex/","name":"SitEx at Novosibirsk State University","pattern":"^\\d+$","prefix":"sitex","uri_format":"http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"},"prefixcommons":{"description":"SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.","examples":["1000"],"homepage":"http://www-bionet.sscc.ru/sitex/","keywords":["domain","eukaryotic","sequence","structure"],"name":"SitEx database of eukaryotic protein functional sites","pattern":"^\\d+$","prefix":"sitex","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sitex:$1"}],"publications":[{"pubmed":"22139920"}],"uri_format":"http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SITEX","uri_format":"http://identifiers.org/sitex/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"skip":{"prefix":"skip","name":"Stemcell Knowledge and Information Portal","description":"SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.","pattern":"^SKIP\\d+$","uri_format":"https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://skip.stemcellinformatics.org/en/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SKIP001214","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"SKIP"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://www.skip.stemcellinformatics.org/en/","name":"Stemcell Knowledge and Information Portal","prefix":"SKIP","uri_format":"https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"skm":{"prefix":"skm","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"skm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. ","examples":["rx00408"],"extras":{"miriam_id":"00000968","namespaceEmbeddedInLui":false},"homepage":"http://www.nib.si/eng/","name":"Stress Knowledge Map","pattern":"^rx[0-9]{5}$","prefix":"skm","status":"active","uri_format":"https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"skos":{"prefix":"skos","name":"Simple Knowledge Organization System","description":"SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web","pattern":null,"uri_format":"http://www.w3.org/2004/02/skos/core#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/2004/02/skos/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"prefLabel","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"skos","bartoc":"18274","biocontext":"skos","lov":"skos","ols":"skos","tib":"skos","zazuko":"skos"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"skos","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"rdf","url":"http://www.w3.org/TR/skos-reference/skos.rdf"}],"prefix":"skos","uri_format":"http://www.w3.org/2004/02/skos/core#$1"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/skos/1/skos.owl"}],"description":"This file is imported by vivo-core-1.5.owl. It contains terms relating to concepts from the http://www.w3.org/2004/02/skos/core# namespace of the SKOS (Simple Knowledge Organization System) ontology that are included in the vivo ontology.","homepage":"http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Ontology","name":"SKOS (concepts)","prefix":"skos","version":"1.5"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"skos","uri_format":"http://www.w3.org/2004/02/skos/core#$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":{"homepage":"http://www.w3.org/2004/02/skos/core","name":"Simple Knowledge Organization System","prefix":"18274","short_names":["skos"],"uri_format":"http://www.w3.org/2004/02/skos/core#$1"},"rrid":null,"lov":{"description":"The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web.","homepage":"http://www.w3.org/2009/08/skos-reference/skos.html","keywords":["W3C Rec"],"name":"Simple Knowledge Organization System","prefix":"skos","uri_format":"http://www.w3.org/2004/02/skos/core#$1"},"zazuko":{"prefix":"skos","uri_format":"http://www.w3.org/2004/02/skos/core#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://www.w3.org/2009/08/skos-reference/skos.rdf"}],"description":"An RDF vocabulary for describing the basic structure and content of concept schemes such as thesauri, classification schemes, subject heading lists, taxonomies, 'folksonomies', other types of controlled vocabulary, and also concept schemes embedded in glossaries and terminologies.","homepage":"https://www.w3.org/TR/skos-reference/","keywords":["Miscellaneous","computer science"],"name":"SKOS Vocabulary","prefix":"skos","uri_format":"http://www.w3.org/2004/02/skos/core#$1"}},"skos.thes":{"prefix":"skos.thes","name":"SKOS Thesaurus Extension","description":"SKOS-Thes: An extension to SKOS based on the ISO 25964 data model. The ISO 25964 standard, published in 2011, covers all aspects of developing thesauri and setting up mappings across vocabularies to encourage high quality information retrieval across networked resources. [from https://www.dublincore.org/specifications/skos-thes/]","pattern":null,"uri_format":"https://www.dublincore.org/specifications/skos-thes/ns/#$1","uri_format_resolvable":null,"rdf_uri_format":"http://purl.org/iso25964/skos-thes#$1","providers":null,"homepage":"https://www.dublincore.org/specifications/skos-thes/ns/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CompoundEquivalence","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://www.dublincore.org/specifications/skos-thes/ns/skos-thes.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["skos-thes","skosthes"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"skosxl":{"prefix":"skosxl","name":"Simple Knowledge Organization System eXtension for Labels","description":"The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary.","pattern":null,"uri_format":"http://www.w3.org/2008/05/skos-xl#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://www.w3.org/2008/05/skos-xl#","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"literalForm","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"skosxl","tib":"skosxl","zazuko":"skosxl"},"synonyms":["skos-xl","skos.xl"],"keywords":["data model","metadata","semantic web","skos"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"skosxl","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.","homepage":"http://www.w3.org/TR/skos-reference/skos-xl.html","keywords":["W3C Rec"],"name":"SKOS eXtension for Labels","prefix":"skosxl","uri_format":"http://www.w3.org/2008/05/skos-xl#$1"},"zazuko":{"prefix":"skosxl","uri_format":"http://www.w3.org/2008/05/skos-xl#$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://www.w3.org/2009/08/skos-reference/skos-xl.rdf"}],"description":"An RDF vocabulary extending SKOS and allowing the description and linking of lexical entities.","homepage":"https://www.w3.org/TR/skos-reference/skos-xl.html","keywords":["Miscellaneous","computer science"],"name":"SKOS XL Vocabulary","prefix":"skosxl","uri_format":"http://www.w3.org/2008/05/skos-xl#$1"}},"slctr":{"prefix":"slctr","name":"Sri Lanka Clinical Trials Registry","description":"The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)","pattern":"^SLCTR/\\d{4}/\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://slctr.lk/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SLCTR/2023/010","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://slctr.lk/trials/slctr-2023-010"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://slctr.lk/images/logo.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"slkbase":{"prefix":"slkbase","name":null,"description":null,"pattern":"^\\d+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"3618","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"cellosaurus":"SLKBase"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":{"description":"Cell line databases/resources","homepage":"https://sumlineknowledgebase.com/","name":"SUM Breast Cancer Cell Line Knowledge Base","prefix":"SLKBase","uri_format":"https://sumlineknowledgebase.com/?page_id=$1"},"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"slm":{"prefix":"slm","name":"SwissLipid","description":null,"pattern":"^\\d+$","uri_format":"https://www.swisslipids.org/#/entity/SLM:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"000000341","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/slm/slm.owl.gz","download_obo":"https://w3id.org/biopragmatics/resources/slm/slm.obo.gz","download_json":"https://w3id.org/biopragmatics/resources/slm/slm.json.gz","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"SLM","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SWISSLIPID","integbio":"nbdc02026","miriam":"slm","n2t":"swisslipid","ols":"slm","pathguide":"687","re3data":"r3d100012603","togoid":"Swisslipids","uniprot":"DB-0197","wikidata":"P8691"},"synonyms":["swisslipid","swisslipids"],"keywords":null,"domain":"chemical","references":null,"publications":[{"pubmed":"25943471","doi":"10.1093/bioinformatics/btv285","pmc":"PMC4547616","title":"The SwissLipids knowledgebase for lipid biology","year":2015},{"pubmed":"25943471","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25943471","doi":"10.1093/bioinformatics/btv285","pmc":null,"title":null,"year":null},{"pubmed":"25943471","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25943471","doi":"10.1093/bioinformatics/btv285","pmc":null,"title":null,"year":null},{"pubmed":"25943471","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25943471","doi":"10.1093/bioinformatics/btv285","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"SLM","mastodon":null,"github_request_issue":null,"logo":"https://www.swisslipids.org/images/SL_title_swiss.png","miriam":{"description":"SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.","examples":["000048885"],"extras":{"miriam_id":"00000550","namespaceEmbeddedInLui":true},"homepage":"http://www.swisslipids.org/#/","name":"SwissLipids","pattern":"^SLM:\\d+$","prefix":"slm","status":"active","uri_format":"http://www.swisslipids.org/#/entity/SLM:$1/"},"n2t":{"description":"SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.","examples":["000048885"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://www.swisslipids.org/#/","name":"SwissLipids at Swiss Institute of Bioinformatics","pattern":"^SLM:\\d+$","prefix":"swisslipid","uri_format":"http://www.swisslipids.org/#/entity/SLM:$1/"},"prefixcommons":null,"wikidata":{"description":"identifier for lipids used by the SwissLipids database","examples":["SLM:000000274","SLM:000000510"],"homepage":"https://www.swisslipids.org/#/","name":"SwissLipids ID","prefix":"P8691","uri_format":"https://www.swisslipids.org/#/entity/$1/","xrefs":{"miriam":"swisslipid","wikidata":"Q41165322"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"description":"SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.","name":"SwissLipids","prefix":"slm","uri_format":"https://swisslipids.org/rdf/SLM_$1"},"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.swisslipids.org","keywords":["Chemistry databases"],"name":"SwissLipids knowledge resource for lipid biology","prefix":"DB-0197","publications":[{"doi":"10.1093/bioinformatics/btv285","pubmed":"25943471"}],"short_names":["SwissLipids"],"uri_format":"https://www.swisslipids.org/#/entity/$1/"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SWISSLIPID","uri_format":"http://identifiers.org/swisslipid/$1"},"edam":null,"re3data":{"description":"SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.","homepage":"https://www.swisslipids.org/#/","name":"SwissLipids","prefix":"r3d100012603","prefix_synonyms":["A knowledge resource for lipids and their biology","Swiss+Lipids"],"xrefs":{"doi":"10.17616/R3TZ18","omics":"08652"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"examples":["SLM:000000002","SLM:000000003","SLM:000000006","SLM:000000007","SLM:000000035","SLM:000000042","SLM:000000043","SLM:000000044","SLM:000000047","SLM:000000048"],"keywords":["Lipid"],"name":"SwissLipids","pattern":"^SLM[:_](?\\d+)$","prefix":"Swisslipids","uri_format":"http://identifiers.org/slm/SLM:$1","xrefs":{"integbio":"nbdc02026"}},"integbio":{"description":"SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models. SwissLipids is updated daily.","homepage":"http://www.swisslipids.org/#/","keywords":["Protein","Lipid","Chemical structure","Interaction/Pathway"],"name":"SwissLipids","prefix":"nbdc02026","publications":[{"pubmed":"25943471"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.pxr7x2"}},"pathguide":{"homepage":"http://www.swisslipids.org/#/","name":"A Knowledge Resource for Lipids and their Biology","prefix":"687","short_names":["SwissLipids"]},"tib":null},"slso":{"prefix":"slso","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000000","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":"https://github.com/nasa/LSDAO/raw/refs/heads/master/slso.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SLSO","bioportal":"SLSO","obofoundry":"slso","ols":"slso","ontobee":"SLSO"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/slso.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/slso.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/slso.json"}],"contact":{"email":"daniel.c.berrios@nasa.gov","github":"DanBerrios","name":"Dan Berrios","orcid":"0000-0003-4312-9552"},"description":"The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.","domain":"investigations","homepage":"https://github.com/nasa/LSDAO","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"name":"Space Life Sciences Ontology","preferred_prefix":"SLSO","prefix":"slso","repository":"https://github.com/nasa/LSDAO","status":"active"},"bioportal":{"contact":{"email":"daniel.c.berrios@nasa.gov","name":"Dan Berrios"},"description":"The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive (located at https://nlsp.nasa.gov) and other systems that contain space life science research data. Many kinds of scientific research in space involve specialized equipment, experimental procedures, specimens and specimen collection apparatus, supporting operational structures, and references to specific space environments and their characteristics. Often such research is extremely costly compared with planetary/terrestrial investigations, and the community supporting space life sciences is accustomed to the use of various specialized concepts and terminologies when dealing with this kind of research and data. However, the underlying conceptual models (and especially the specific labeled relationships in these models) have never been made explicit. The SLSO attempts to provide definition and organization of these models for the space research community. The SLSO was developed ab inicio using the Ontology Development Kit and imports an extends many concepts from the Basic Formal Ontology (BFO), the Ontology of Biomedical Investigations (OBI), the Environmental Ontology (ENVO), and other OBO Foundry ontologies. Projects at NASA such as the Open Science Data Repository (https://osdr.nasa.gov/) are already using many OBO ontologies, including the Radiation Biology Ontology (https://github.com/Radiobiology-Informatics-Consortium/RBO) and OBI, to index space biology investigation data. With the development of the SLSO, this practice can be extended to include all life science research in space or addressing space effects. Furthermore, the SLSO has a component that imports concepts from the Science Data Discovery Ontology, which was developed to support NASA's Science Discovery Engine (https://sciencediscoveryengine.nasa.gov). These links in the imported SDDO to concepts underlying a broad spectrum of space research (astrophysics, heliophysics, etc.) can ultimately be used to provide key capabilities for discovering and analyzing space life science data and how they relate to other kinds of scientific data regarding space environments., The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.","homepage":"https://github.com/nasa/LSDAO/tree/master/src/ontology","license":{"name":"CC-BY-3.0"},"name":"Space Life Sciences Ontology","prefix":"SLSO","version":"2025-12-11"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/slso.owl"}],"description":"The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.","extras":{"version.iri":"http://purl.obolibrary.org/obo/slso/releases/2025-12-11/slso.owl"},"homepage":"https://github.com/nasa/LSDAO","name":"Space Life Sciences Ontology","prefix":"slso","tracker":"https://github.com/nasa/LSDAO/issues","version":"2025-12-11"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SLSO/13/slso.owl"}],"description":"The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.","homepage":"https://github.com/nasa/LSDAO","name":"Space Life Sciences Ontology","prefix":"SLSO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Space Life Sciences Ontology","prefix":"SLSO"},"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"smart":{"prefix":"smart","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Chris P. Ponting","orcid":"0000-0003-0202-7816","email":"chris.ponting@ed.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SMART","go":"SMART","integbio":"nbdc00682","miriam":"smart","n2t":"smart","prefixcommons":"smart","togoid":"Smart","uniprot":"DB-0097","wikidata":"P3524"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"29040681","doi":"10.1093/nar/gkx922","pmc":"PMC5753352","title":"20 years of the SMART protein domain annotation resource","year":2018},{"pubmed":"25300481","doi":"10.1093/nar/gku949","pmc":"PMC4384020","title":"SMART: recent updates, new developments and status in 2015","year":2014},{"pubmed":"22053084","doi":"10.1093/nar/gkr931","pmc":"PMC3245027","title":"SMART 7: recent updates to the protein domain annotation resource","year":2011},{"pubmed":"18978020","doi":"10.1093/nar/gkn808","pmc":"PMC2686533","title":"SMART 6: recent updates and new developments","year":2008},{"pubmed":"16381859","doi":"10.1093/nar/gkj079","pmc":"PMC1347442","title":"SMART 5: domains in the context of genomes and networks","year":2006},{"pubmed":"14681379","doi":"10.1093/nar/gkh088","pmc":"PMC308822","title":"SMART 4.0: towards genomic data integration","year":2004},{"pubmed":"11752305","doi":"10.1093/nar/30.1.242","pmc":"PMC99073","title":"Recent improvements to the SMART domain-based sequence annotation resource","year":2002},{"pubmed":"10592234","doi":"10.1093/nar/28.1.231","pmc":"PMC102444","title":"SMART: a web-based tool for the study of genetically mobile domains","year":2000},{"pubmed":"10361098","doi":"10.1016/s0959-440x(99)80055-4","pmc":null,"title":"Protein families in multicellular organisms","year":1999},{"pubmed":"9847187","doi":"10.1093/nar/27.1.229","pmc":"PMC148142","title":"SMART: identification and annotation of domains from signalling and extracellular protein sequences","year":1999},{"pubmed":"22053084","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18978020","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16381859","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"9600884","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"9847187","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"41062452","doi":"10.1093/nar/gkaf1023","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.","examples":["SM00015"],"extras":{"miriam_id":"00000118","namespaceEmbeddedInLui":false},"homepage":"http://smart.embl-heidelberg.de/","name":"SMART","pattern":"^SM\\d{5}$","prefix":"smart","status":"active","uri_format":"http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"},"n2t":{"description":"The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.","examples":["SM00015"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://smart.embl-heidelberg.de/","name":"SMART (Simple Modular Architecture Research Tool)","pattern":"^SM\\d{5}$","prefix":"smart","uri_format":"http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"},"prefixcommons":{"description":"The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.","examples":["SM00015"],"homepage":"http://smart.embl.de/","keywords":["domain","protein","structure"],"license":{"name":"CC BY-SA 3.0","url":"http://creativecommons.org/licenses/by-sa/3.0/"},"name":"Simple Modular Architecture Research Tool; a protein domain database","pattern":"^SM\\d{5}$","prefix":"smart","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/smart:$1"}],"publications":[{"pubmed":"9847187"}],"uri_format":"http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"},"wikidata":{"description":"identifier for a protein domain in the SMART database","examples":["SM00297","SM00326","SM00339"],"name":"Simple Modular Architecture Research Tool ID","pattern":"^SM\\d{5}$","prefix":"P3524","uri_format":"http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"},"wikidata_entity":null,"go":{"homepage":"http://smart.embl-heidelberg.de/","name":"Simple Modular Architecture Research Tool","prefix":"SMART","uri_format":"http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://smart.embl.de/","keywords":["Family and domain databases"],"name":"Simple Modular Architecture Research Tool; a protein domain database","prefix":"DB-0097","publications":[{"doi":"10.1093/nar/gkaf1023","pubmed":"41062452"}],"short_names":["SMART"],"uri_format":"https://smart.embl.de/smart/do_annotation.pl?DOMAIN=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SMART","uri_format":"http://identifiers.org/smart/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":{"description":"SMART is a database of protein domains found in several different protein classes. The database contains classification information for domains and the proteins they can be found in. Users can search by sequence or domain information. The database can also be requested for local installation.","examples":["SM00130","SM00239","SM00043","SM00091","SM00104","SM01001","SM00135","SM00281","SM00996","SM00015"],"keywords":["Domain"],"name":"SMART","pattern":"^(?SM\\d{5})$","prefix":"Smart","uri_format":"http://identifiers.org/smart/$1","xrefs":{"integbio":"nbdc00682"}},"integbio":{"description":"SMART is a database of protein domains found in several different protein classes. The database contains classification information for domains and the proteins they can be found in. Users can search by sequence or domain information. The database can also be requested for local installation.","homepage":"http://smart.embl-heidelberg.de","keywords":["Protein","3D structure","Chemical structure","Classification"],"name":"Simple Modular Architecture Research Tool","prefix":"nbdc00682","publications":[{"pubmed":"22053084"},{"pubmed":"18978020"},{"pubmed":"16381859"},{"pubmed":"9600884"}],"short_names":["SMART"],"status":"active","xrefs":{"fairsharing":"FAIRsharing.hsbpq3"}},"pathguide":null,"tib":null},"smc.bgc":{"prefix":"smc.bgc","name":"Secondary Metabolism Collaboratory - biosynthetic gene cluster","description":"The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for individual biosynthetic gene clusters (BGCs) linked to their corresponding bacterial or archaeal source.","pattern":"^\\d+$","uri_format":"https://smc.jgi.doe.gov/bgc/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://smc.jgi.doe.gov","repository":null,"contact":{"name":"Daniel W Udwary","orcid":"0000-0002-3491-0198","email":"dwudwary@lbl.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"12039302","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39540430","doi":"10.1093/nar/gkae1060","pmc":null,"title":"The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1301,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"smc.source":{"prefix":"smc.source","name":"Secondary Metabolism Collaboratory - taxon","description":"The secondary metabolism collaboratory is a database for secondary metabolite biosynthetic gene clusters. This prefix represents identifiers for bacteria and archaea sources linked to their associated set of biosynthetic gene clusters (BGCs).","pattern":"^\\d+$","uri_format":"https://smc.jgi.doe.gov/sources/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://smc.jgi.doe.gov","repository":null,"contact":{"name":"Daniel W Udwary","orcid":"0000-0002-3491-0198","email":"dwudwary@lbl.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39540430","doi":"10.1093/nar/gkae1060","pmc":null,"title":"The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1301,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"smid":{"prefix":"smid","name":"C. elegans Small Molecule Identifier Database","description":"SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications.","pattern":"^\\d+$","uri_format":"https://smid-db.org/smid/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://smid-db.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"137","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["SMID-DB"],"keywords":null,"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"smiles":{"prefix":"smiles","name":"Simplified molecular-input line-entry system","description":"Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"cms.descriptor","name":"RDKit Descriptor via the Cheminformatics Microservice","description":"Returns descriptors calculated from the molecule with RDKit","homepage":"https://api.naturalproducts.net/latest/docs#/chem/get_descriptors_chem_descriptors_get","uri_format":"https://api.naturalproducts.net/latest/chem/descriptors?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.depict2d","name":"Depict 2D via the Cheminformatics Microservice","description":"Generates a 2D depiction of a molecule using CDK or RDKit with the given parameters.","homepage":"https://api.naturalproducts.net/latest/docs#/depict/Depict2D_molecule_depict_2D_get","uri_format":"https://api.naturalproducts.net/latest/depict/2D?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.depict3d","name":"Depict 3D via the Cheminformatics Microservice","description":"Generate 3D depictions of molecules using OpenBabel or RDKit.","homepage":"https://api.naturalproducts.net/latest/docs#/depict/Depict3D_Molecule_depict_3D_get","uri_format":"https://api.naturalproducts.net/latest/depict/3D?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.coordinates2d","name":"Generate 2D coordinates via the Cheminformatics Microservice","description":"Generates 2D Coordinates using the CDK Structure diagram generator/RDKit/Open Babel and returns the mol block.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/Create2D_Coordinates_convert_mol2D_get","uri_format":"https://api.naturalproducts.net/latest/convert/mol2D?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.coordinates3d","name":"Generate 3D conformer via the Cheminformatics Microservice","description":"Generates a random 3D conformer from SMILES using the specified molecule toolkit.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/Create3D_Coordinates_convert_mol3D_get","uri_format":"https://api.naturalproducts.net/latest/convert/mol3D?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.canonicalize","name":"Canonicalizes a SMILES via the Cheminformatics Microservice","description":"Canonicalizes a given SMILES string according to the allowed toolkits.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_Canonicalise_convert_canonicalsmiles_get","uri_format":"https://api.naturalproducts.net/latest/convert/canonicalsmiles?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.cxsmiles","name":"Convert SMILES to CXSMILES via the Cheminformatics Microservice","description":"Convert SMILES to CXSMILES. For more informations.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_to_CXSMILES_convert_cxsmiles_get","uri_format":"https://api.naturalproducts.net/latest/convert/cxsmiles?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.inchi","name":"Convert SMILES to InChI via the Cheminformatics Microservice","description":"Convert SMILES to InChI.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_to_InChI_convert_inchi_get","uri_format":"https://api.naturalproducts.net/latest/convert/inchi?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.inchikey","name":"Convert SMILES to InChIKey via the Cheminformatics Microservice","description":"Convert SMILES to InChIKey.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_to_InChIKey_convert_inchikey_get","uri_format":"https://api.naturalproducts.net/latest/convert/inchikey?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.iupac","name":"Generate IUPAC name from SMILES via the Cheminformatics Microservice","description":"Generates IUPAC name for given SMILES using [STOUT](https://jcheminf.biomedcentral.com/articles/10.1186/s13321-021-00512-4) package.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_to_IUPACname_convert_iupac_get","uri_format":"https://api.naturalproducts.net/latest/convert/iupac?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.selfies","name":"Generates SELFIES for a SMILES via the Cheminformatics Microservice","description":"Generates SELFIES string for a given SMILES string.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/encode_SELFIES_convert_selfies_get","uri_format":"https://api.naturalproducts.net/latest/convert/selfies?smiles=$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"cms.convert","name":"Convert SMILES to various molecular formats via the Cheminformatics Microservice","description":"Convert SMILES to various molecular formats using different toolkits.","homepage":"https://api.naturalproducts.net/latest/docs#/convert/SMILES_convert_to_Formats_convert_formats_get","uri_format":"https://api.naturalproducts.net/latest/convert/formats?smiles=$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html","repository":null,"contact":{"name":"Tim Vandermeersch","orcid":null,"email":"tim.vandermeersch@gmail.com","github":"timvdm"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CC2(C)C\\1CCC(C)/C=C/12","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.qv4b3c","wikidata":"P233","wikidata.entity":"Q466769"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/issues/931"],"publications":[{"pubmed":"23031664","doi":"10.1186/1758-2946-4-24","pmc":"PMC3551648","title":"mol2chemfig, a tool for rendering chemical structures from molfile or SMILES format to LATE X code","year":2012},{"pubmed":null,"doi":"10.1021/ci00067a005","pmc":null,"title":"SMILES. 3. DEPICT. Graphical depiction of chemical structures","year":1990},{"pubmed":null,"doi":"10.1021/ci00062a008","pmc":null,"title":"SMILES. 2. Algorithm for generation of unique SMILES notation","year":1989},{"pubmed":null,"doi":"10.1021/ci00057a005","pmc":null,"title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","year":1988},{"pubmed":null,"doi":"10.1021/ci00062a008","pmc":null,"title":"SMILES. 2. Algorithm for generation of unique SMILES notation","year":1989},{"pubmed":"23031664","doi":"10.1186/1758-2946-4-24","pmc":null,"title":"mol2chemfig, a tool for rendering chemical structures from molfile or SMILES format to LATE X code","year":2012},{"pubmed":null,"doi":"10.1021/ci00057a005","pmc":null,"title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","year":1988},{"pubmed":null,"doi":"10.1021/ci00067a005","pmc":null,"title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","year":1990},{"pubmed":null,"doi":"10.1021/ci00062a008","pmc":null,"title":"SMILES. 2. Algorithm for generation of unique SMILES notation","year":1989},{"pubmed":"23031664","doi":"10.1186/1758-2946-4-24","pmc":null,"title":"mol2chemfig, a tool for rendering chemical structures from molfile or SMILES format to LATE X code","year":2012},{"pubmed":null,"doi":"10.1021/ci00057a005","pmc":null,"title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","year":1988},{"pubmed":null,"doi":"10.1021/ci00067a005","pmc":null,"title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","year":1990}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Nisha Sharma","orcid":"0009-0006-4755-1039","email":null,"github":"NishaSharma14"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"Simplified Molecular Input Line Entry Specification (canonical format)","examples":["CC2(C)C\\1CCC(C)/C=C/12","CCO","[Au]"],"name":"canonical SMILES","pattern":"^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$","prefix":"P233","uri_format":"https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip","xrefs":{"wikidata":"Q466769"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"egon.willighagen@maastrichtuniversity.nl","name":"Egon Willighagen","orcid":"0000-0001-7542-0286"},"description":"This format is an open specification version of the SMILES language, a typographical line notation for specifying chemical structure. It is hosted under the banner of the Blue Obelisk project, with the intent to solicit contributions and comments from the entire computational chemistry community.","homepage":"http://opensmiles.org/opensmiles.html","keywords":["Life Science","Lipidomics","Metabolomics","Chemistry","Bioinformatics","Structure","Data analysis","molecular entity"],"license":{"url":"https://www.gnu.org/licenses/old-licenses/fdl-1.2.en.html"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBazRFIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--047d6c77b3abf77702d511a7e6a66acd8eb554b8/19335777.jpg?disposition=inline","name":"Simplified Molecular Input Line Entry Specification Format","prefix":"FAIRsharing.qv4b3c","publications":[{"doi":"10.1021/ci00062a008","title":"SMILES. 2. Algorithm for generation of unique SMILES notation","url":"http://doi.org/10.1021/ci00062a008","year":1989},{"doi":"10.1186/1758-2946-4-24","pubmed":"23031664","title":"mol2chemfig, a tool for rendering chemical structures from molfile or SMILES format to LATE X code","url":"http://doi.org/10.1186/1758-2946-4-24","year":2012},{"doi":"10.1021/ci00057a005","title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","url":"http://doi.org/10.1021/ci00057a005","year":1988},{"doi":"10.1021/ci00067a005","title":"SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules","url":"http://doi.org/10.1021/ci00067a005","year":1990}],"repository":"https://github.com/opensmiles","short_names":["SMILES"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"smpdb":{"prefix":"smpdb","name":"Small Molecule Pathway Database","description":null,"pattern":"^SMP\\d+$","uri_format":"https://smpdb.ca/view/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"David S. Wishart","orcid":"0000-0002-3207-2434","email":"david.wishart@ualberta.ca","github":"DavidWishartLab"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SMP0000219","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SMPDB","biolink":"PathWhiz","edam":"2659","integbio":"nbdc00908","miriam":"smpdb","n2t":"smpdb","pathguide":"311","prefixcommons":"smpdb"},"synonyms":["SMP"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24203708","doi":"10.1093/nar/gkt1067","pmc":"PMC3965088","title":"SMPDB 2.0: big improvements to the Small Molecule Pathway Database","year":2013},{"pubmed":"19948758","doi":"10.1093/nar/gkp1002","pmc":"PMC2808928","title":"SMPDB: The Small Molecule Pathway Database","year":2009},{"pubmed":"19948758","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"19948758","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.","examples":["SMP00001"],"extras":{"miriam_id":"00000104","namespaceEmbeddedInLui":false},"homepage":"https://smpdb.ca/","name":"Small Molecule Pathway Database","pattern":"^SMP\\d+$","prefix":"smpdb","status":"active","uri_format":"http://smpdb.ca/view/$1"},"n2t":{"description":"The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.","examples":["SMP00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.smpdb.ca/pathways","name":"Small Molecule Pathway Database","pattern":"^SMP\\d+$","prefix":"smpdb","uri_format":"http://smpdb.ca/view/$1"},"prefixcommons":{"description":"The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.","examples":["SMP00001"],"homepage":"http://www.smpdb.ca/","keywords":["chemical","human","metabolite","pathway"],"license":{"name":"http://www.smpdb.ca/about#cite","url":"http://www.smpdb.ca/about#cite"},"name":"Small Molecule Pathway Database","pattern":"^SMP\\d{5}$","prefix":"smpdb","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/smpdb:$1"}],"uri_format":"http://pathman.smpdb.ca/pathways/$1/pathway"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":{"prefix":"PathWhiz","uri_format":"http://smpdb.ca/pathways/#$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SMPDB","uri_format":"http://smpdb.ca/view/$1"},"edam":{"description":"Identifier of a pathway from the Small Molecule Pathway Database (SMPDB).","name":"Pathway ID (SMPDB)","prefix":"2659"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SMPDB is a database of the biological pathways of small molecules. The database contains pathway information on hundreds of small molecules, many unique to SMPDB. Users can browse pathways by category, search the database, or use structure, sequence, and small molecule tools to explore pathways.","homepage":"http://www.smpdb.ca/","keywords":["Protein","Metabolite","Interaction/Pathway","Image/Movie"],"name":"Small Molecule Pathway Database","prefix":"nbdc00908","publications":[{"pubmed":"19948758"}],"short_names":["SMPDB"],"status":"active","xrefs":{"fairsharing":"biodbcore-000352"}},"pathguide":{"homepage":"http://www.smpdb.ca/","keywords":["BioPAX","SBML"],"name":"Small Molecule Pathway Database","prefix":"311","short_names":["SMPDB"]},"tib":null},"snap":{"prefix":"snap","name":"Snapshot","description":"Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.","pattern":null,"uri_format":"http://www.ifomis.org/bfo/1.1/snap#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Quality","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["bfo11snap"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"snctp":{"prefix":"snctp","name":"Swiss National Clinical Trials Portal","description":"The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://kofam.ch/en/snctp-portal","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SNCTP000005580","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"it appears they cede information into WHO","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"snodb":{"prefix":"snodb","name":"snoDB","description":"Contains identifiers for human small nucleolar RNAs (snoRNAs) from snoDB, an interactive database of human small nucleolar RNAs (snoRNAs) that includes up-to-date information on snoRNA features, genomic location, conservation, host gene, snoRNA–RNA targets and snoRNA abundance and provides links to other resources.","pattern":"^snoDB\\d{4}$","uri_format":"https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/detailed_view/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB","repository":null,"contact":{"name":"Michelle S Scott","orcid":"0000-0001-6231-7714","email":"michelle.scott@usherbrooke.ca","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"snoDB0001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc02602"},"synonyms":null,"keywords":["human nucleolar rna","rna","snorna-protein"],"domain":null,"references":null,"publications":[{"pubmed":"36165892","doi":"10.1093/nar/gkac835","pmc":"PMC9825428","title":"snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs","year":2023},{"pubmed":"31598696","doi":"10.1093/nar/gkz884","pmc":"PMC6943035","title":"snoDB: an interactive database of human snoRNA sequences, abundance and interactions","year":2020},{"pubmed":"31598696","doi":"10.1093/nar/gkz884","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Maaya Manoj","orcid":"0009-0000-6974-6386","email":"maaya.m466@gmail.com","github":"maayamanoj466"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1655,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"snoDB is a database of human snoRNA, which data are collected from other established databases, publications and experimental data generated by the group. Each entry contains information about synonym, box type, location, conservation, genomic sequence and expression data.","homepage":"https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/","keywords":["Genome/Gene","RNA","Health/Disease","Sequence","Expression","Localization","Interaction/Pathway"],"name":"snoDB","prefix":"nbdc02602","publications":[{"doi":"10.1093/nar/gkz884","pubmed":"31598696"}],"status":"active"},"pathguide":null,"tib":null},"snomedct":{"prefix":"snomedct","name":null,"description":null,"pattern":null,"uri_format":"http://purl.bioontology.org/ontology/SNOMEDCT/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"snomed.info","name":null,"description":"Stopped working sometime in 2020's","homepage":null,"uri_format":"http://snomed.info/id/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"https://uts.nlm.nih.gov/uts/assets/LicenseAgreement.pdf","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SNOMEDCT","bartoc":"20686","biocontext":"SNOMEDCT","biolink":"SNOMEDCT","bioportal":"SNOMEDCT","fairsharing":"FAIRsharing.d88s6e","hl7":"2.16.840.1.113883.6.96","miriam":"snomedct","n2t":"snomedct","ols":"snomed","prefixcommons":"snomedct","wikidata":"P5806"},"synonyms":["SCTID","SCTID_2010_1_31","SNOMECT","SNOMED","SNOMEDCT","SNOMEDCTCT","SNOMEDCTCT_2018_03_01","SNOMEDCTCT_2019_03_01","SNOMEDCT_2005_07_31","SNOMEDCT_2010_1_31","SNOMEDCT_2020_03_01","SNOMEDCT_US","SNOMEDCT_US_2015_03_01","SNOMEDCT_US_2016_03_01","SNOMEDCT_US_2018_03_01","SNOMEDCT_US_2018_09_01","SNOMEDCT_US_2019_03_01","SNOMEDCT_US_2019_09_01","SNOMEDCT_US_2020_03_01","SNOMEDCT_US_2020_09_01","SNOMEDCT_US_2021_03_01","SNOMEDCT_US_2021_07_31","SNOMEDCT_US_2021_09_01","SNOMEDCT_US_2022_07_31","SNOMEDCT_US_2022_09_01","SNOMEDCT_US_2022_12_31","SNOMEDCT_US_2023_02_28","SNOMEDCT_US_2023_03_01","SNOMEDCT_US_2023_09_01","SNOMEDCT_US_2023_10_01","SNOMEDCT_US_2023_11_01","SNOMEDCT_US_2024_03_01","SNOMEDCT_US_2025_09_01","SNOMED_CT","SNOMED_CT_US_2018_03_01","SNOWMEDCT","SNOWMEDCT_US","SNOWMEDCT_US_2018_03_01"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"16980782","doi":"10.1097/00024665-200609000-00011","pmc":null,"title":"Standardized nursing language in the systematized nomenclature of medicine clinical terms: A cross-mapping validation method","year":2006},{"pubmed":"16980782","doi":"10.1097/00024665-200609000-00011","pmc":null,"title":"Standardized nursing language in the systematized nomenclature of medicine clinical terms: A cross-mapping validation method","year":2006},{"pubmed":"16980782","doi":"10.1097/00024665-200609000-00011","pmc":null,"title":"Standardized nursing language in the systematized nomenclature of medicine clinical terms: A cross-mapping validation method","year":2006}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.","examples":["284196006"],"extras":{"miriam_id":"00000269","namespaceEmbeddedInLui":false},"homepage":"https://browser.ihtsdotools.org/","name":"SNOMED CT","pattern":"^(\\w+)?\\d+$","prefix":"snomedct","status":"active","uri_format":"https://browser.ihtsdotools.org/?perspective=full&conceptId1=$1"},"n2t":{"description":"SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.","examples":["284196006"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.snomedbrowser.com/","name":"SNOMED-CT at The National Pathology Exchange","pattern":"^(\\w+)?\\d+$","prefix":"snomedct","uri_format":"http://www.snomedbrowser.com/Codes/Details/$1"},"prefixcommons":{"description":"SNOMED Clinical Terms","examples":["284196006"],"homepage":"http://ihtsdo.org","name":"Systematized Nomenclature of Medicine - Clinical Terms","pattern":"^(\\w+)?\\d+$","prefix":"snomedct","prefix_synonyms":["snomed","snomedct_2010_1_31","snomedct_2013_01_31"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/snomedct:$1"}],"xrefs":{"bioportal":"1353"}},"wikidata":{"description":"identifier in the SNOMED CT catalogue codes for diseases, symptoms and procedures","examples":["267718000","464035001","64859006"],"homepage":"https://browser.ihtsdotools.org/","name":"SNOMED CT ID","pattern":"^[0-9]*$","prefix":"P5806","uri_format":"https://browser.ihtsdotools.org/?perspective=full&conceptId1=$1&languages=en","uri_format_rdf":"http://snomed.info/id/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"custserv@nlm.nih.gov","name":"NLM Customer Service"},"description":"The US Edition of SNOMED CT combines the International Release of SNOMED CT and the US Extension of SNOMED CT
SNOMED CT provides the core general terminology for the electronic health record (EHR). The concepts have unique meanings and formal logic-based definitions organized into hierarchies. Each International Release includes the core of the terminology (concepts, descriptions, and relationships), together with works to support the implementation and use of SNOMED CT, including subsets, cross maps to existing classifications and coding schemes, and an extensive set of guidelines.
The US Extension to SNOMED CT included the concepts, descriptions, and relationships accepted by NLM as a formal extension to the SNOMED CT International Release. NLM no longer releases the standalone US Extension.
The US Edition of SNOMED CT includes more than 300,000 unique concepts. There are over 1,000,000 descriptions in SNOMED CT, including synonyms that can be used to refer to a concept. In addition, there are approximately 903,000 links or semantic relationships between the SNOMED CT concepts.","homepage":"http://www.snomed.org","name":"SNOMED CT, US Edition","prefix":"SNOMEDCT","publications":[{"url":"http://www.snomed.org"}],"version":"2025_09_01"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"description":"SNOMED CT or SNOMED Clinical Terms is a systematically organized computer processable collection of medical terms providing codes, terms, synonyms and definitions used in clinical documentation and reporting.\n","extras":{"version.iri":"http://snomed.info/sct/900000000000207008/version/20251017"},"name":"SNOMED CT (International Edition)","prefix":"snomed","uri_format":"http://snomed.info/id/$1","version":"20251017"},"aberowl":{"description":"SNOMED Clinical Terms","homepage":"http://www.snomed.org","name":"SNOMED CT","prefix":"SNOMEDCT","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"SNOMEDCT","uri_format":"http://snomed.info/id/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Systematized Nomenclature of Medicine Clinical Terms is a reference terminology that can be used to cross-map standardized healthcare languages across healthcare disciplines.","homepage":"https://www.snomed.org/what-is-snomed-ct","keywords":["Preclinical Studies","Biomedical Science","Health Science","Medicine"],"license":{"url":"https://www.snomed.org/snomed-ct/get-snomed"},"name":"Systematized Nomenclature of Medicine-Clinical Terms","prefix":"FAIRsharing.d88s6e","publications":[{"doi":"10.1097/00024665-200609000-00011","pubmed":"16980782","title":"Standardized nursing language in the systematized nomenclature of medicine clinical terms: A cross-mapping validation method","url":"http://doi.org/10.1097/00024665-200609000-00011","year":2006}],"short_names":["SNOMED CT"]},"biocontext":{"prefix":"SNOMEDCT","uri_format":"http://identifiers.org/snomedct/$1"},"edam":null,"re3data":null,"hl7":{"description":"SNOMED CT is a concept-based, scientifically validated terminology that provides a unique and permanent concept identifier that can be included in multiple HL7 data types including CD and CE. The concepts are managed to avoid \"semantic drift\" so the meaning remains constant. If the concept is found to be ambiguous or the meaning changes, the concept is inactivated but still retained and the identifier is never reused. SNOMED CT's concepts are interrelated hierarchically and using description logic. SNOMED CT concepts have a unique \"fully-specified name\", a preferred term, and, optionally, synonyms. The description languages include English and Spanish. ","extras":{"organization":"International Health Terminology Standards Development Organisation "},"homepage":"http://www.ihtsdo.org","name":"SNOMED Clinical Terms","preferred_prefix":"snomed-CT","prefix":"2.16.840.1.113883.6.96","status":"active"},"bartoc":{"homepage":"https://www.snomed.org/","name":"Systematized Nomenclature of Human and Veterinary Medicine Clinical Termns","prefix":"20686","short_names":["SNOMED CT"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"snornabase":{"prefix":"snornabase","name":"snoRNABase","description":"A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www-snorna.biotoul.fr/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SR0000178","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc00323","prefixcommons":"snornalbmedb"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"This is a database of human C/D box and H/ACA modification guide RNAs","examples":["HBII-240"],"homepage":"http://www-snorna.biotoul.fr/","keywords":["RNA"],"name":"snoRNA-LBME-db","pattern":"^[A-Z,0-9]+$","prefix":"snornalbmedb","prefix_synonyms":["snornabase"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/snornalbmedb:$1"}],"uri_format":"http://www-snorna.biotoul.fr/plus.php?id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SnoRNABase is an extensive database of human small nucleolar RNAs (snoRNAs) constructed with the invaluable assistance of Laboratoire de Biologie Mol?culaire Eucaryote (LBME) and Jean-Pierre Bachellerie in particular. \nThis repository provides the sequences of both snoRNA classes, namely C/D box snoRNAs and H/ACA box snoRNAs.\nIn version 2 of the database each class contains information on a set of four proteins.\nIn the updated version 3 of the database different sequences are used and the nucleotides are numbered differently.\nKeyword search and Blast search options are available.","homepage":"http://www-snorna.biotoul.fr/","keywords":["RNA","Sequence","Bibliography/Documents"],"name":"snoRNABase","prefix":"nbdc00323","publications":[{"pubmed":"16381836"}],"status":"active"},"pathguide":null,"tib":null},"snp2tfbs":{"prefix":"snp2tfbs","name":"SNP to Transcription Factor Binding Sites","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"dbsnp","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"snp2tfbs"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.","examples":["rs11603840"],"extras":{"miriam_id":"00000766","namespaceEmbeddedInLui":false},"homepage":"https://ccg.epfl.ch/snp2tfbs/","name":"SNP2TFBS","pattern":"^rs[0-9]+$","prefix":"snp2tfbs","status":"active","uri_format":"https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"snp500cancer":{"prefix":"snp500cancer","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"snp500cancer"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer.","examples":["TP53-47"],"homepage":"http://snp500cancer.nci.nih.gov","keywords":["DNA"],"name":"SNP500Cancer","pattern":"^TP\\d+-\\d+$","prefix":"snp500cancer","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/snp500cancer:$1"}],"uri_format":"http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"so":{"prefix":"so","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0001157","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SO","agroportal":"SO","biocontext":"SO","bioportal":"SO","fairsharing":"FAIRsharing.6bc7h9","go":"SO","miriam":"so","n2t":"so","obofoundry":"so","ols":"so","ontobee":"SO","prefixcommons":"so","wikidata.entity":"Q81661803"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20796305","doi":"10.1186/gb-2010-11-8-r88","pmc":"PMC2945790","title":"A standard variation file format for human genome sequences","year":2010},{"pubmed":"20226267","doi":"10.1016/j.jbi.2010.03.002","pmc":"PMC3052763","title":"Evolution of the Sequence Ontology terms and relationships","year":2010},{"pubmed":"15892872","doi":"10.1186/gb-2005-6-5-r44","pmc":"PMC1175956","title":"The Sequence Ontology: a tool for the unification of genome annotations","year":2005}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.","examples":["0000704"],"extras":{"miriam_id":"00000081","namespaceEmbeddedInLui":true},"homepage":"http://bioportal.bioontology.org/ontologies/SO","name":"Sequence Ontology","pattern":"^SO:\\d{7}$","prefix":"so","providers":[{"code":"","description":"Sequence Ontology","homepage":"http://www.sequenceontology.org/","name":"Sequence Ontology","uri_format":"http://www.sequenceontology.org/miso/current_release/term/SO:$1"}],"status":"active","uri_format":"http://purl.bioontology.org/ontology/SO/SO:$1"},"n2t":{"description":"The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.","examples":["0000704"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"http://bioportal.bioontology.org/ontologies/SO","name":"Sequence Ontology through BioPortal","pattern":"^SO:\\d{7}$","prefix":"so","uri_format":"http://purl.bioontology.org/ontology/SO/SO:$1"},"prefixcommons":{"description":"The Sequence Ontology is a set of terms and relationships used to describe the features and attributes of biological sequence. SO includes different kinds of features which can be located on the sequence.","examples":["SO:0000704"],"extras":{"alt_uri_formats":["http://purl.org/obo/owl/SO#$1"]},"homepage":"http://www.sequenceontology.org/","keywords":["obo","ontology","DNA","RNA","structure"],"license":{"name":"http://www.sequenceontology.org/about/citing.html","url":"http://www.sequenceontology.org/about/citing.html"},"name":"Sequence Ontology","pattern":"^SO:\\d{7}$","prefix":"so","prefix_synonyms":["obo.so"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/so:$1"}],"publications":[{"pubmed":"15892872"}],"uri_format":"http://www.sequenceontology.org/miso/current_release/term/$1","xrefs":{"bioportal":"1109"}},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.sequenceontology.org/","name":"Sequence Ontology","prefix":"SO"},"obofoundry":{"appears_in":["pcl"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/so.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/so.obo"}],"contact":{"email":"keilbeck@genetics.utah.edu","github":"keilbeck","name":"Karen Eilbeck","orcid":"0000-0002-0831-6427"},"description":"A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.","domain":"chemistry and biochemistry","homepage":"http://www.sequenceontology.org/","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"logo":"https://obofoundry.org/images/so_logo.png","name":"Sequence types and features ontology","preferred_prefix":"SO","prefix":"so","publications":[{"pubmed":"15892872","title":"The Sequence Ontology: a tool for the unification of genome annotations."},{"pubmed":"20226267","title":"Evolution of the Sequence Ontology terms and relationships."}],"repository":"https://github.com/The-Sequence-Ontology/SO-Ontologies","status":"active"},"bioportal":{"contact":{"email":"song-devel@lists.sourceforge.net","name":"SO Administrators"},"description":"SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. SO was initially developed by the Gene Ontology Consortium. Contributors to SO include the GMOD community, model organism database groups such as WormBase, FlyBase, Mouse Genome Informatics group, and institutes such as the Sanger Institute and the EBI. Input to SO is welcomed from the sequence annotation community. The OBO revision is available here: http://sourceforge.net/p/song/svn/HEAD/tree/","homepage":"http://www.sequenceontology.org","name":"Sequence Types and Features Ontology","prefix":"SO","version":"unknown"},"ecoportal":null,"agroportal":{"contact":{"email":"karen.eilbeck@genetics.utah.edu","name":"Karen Eilbeck (PI)"},"description":"A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.","extras":{"example_uri":"http://purl.obolibrary.org/obo/SO_0001673"},"homepage":"http://www.sequenceontology.org/","name":"Sequence Types and Features Ontology","prefix":"SO","publications":[{"url":"http://www.sequenceontology.org/?page_id=296"}],"repository":"https://github.com/The-Sequence-Ontology/SO-Ontologies"},"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/so.owl"}],"description":"A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.","extras":{"version.iri":"http://purl.obolibrary.org/obo/so/2024-11-18/so.owl"},"homepage":"http://www.sequenceontology.org/","name":"Sequence types and features ontology","prefix":"so","tracker":"https://github.com/The-Sequence-Ontology/SO-Ontologies/issues","version":"2024-11-18"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SO/292/so.owl"}],"description":"A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases.","homepage":"http://www.sequenceontology.org/","name":"Sequence types and features ontology","prefix":"SO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Sequence types and features ontology","prefix":"SO"},"cheminf":null,"fairsharing":{"contact":{"email":"keilbeck@fruitfly.org","name":"Karen Eilbeck","orcid":"0000-0002-0831-6427"},"description":"SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. The Sequence Ontology is a set of terms and relationships used to describe the features and attributes of biological sequence. SO includes different kinds of features which can be located on the sequence.","homepage":"http://www.sequenceontology.org/","keywords":["Life Science","Transcriptomics","Biology","Bioinformatics","Genomics","Sequence annotation","deoxyribonucleic acid","ribonucleic acid","region","sequence feature","gene","genome"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Sequence Ontology","prefix":"FAIRsharing.6bc7h9","publications":[{"doi":"10.1186/gb-2010-11-8-r88","pubmed":"20796305","title":"A standard variation file format for human genome sequences","url":"http://doi.org/10.1186/gb-2010-11-8-r88","year":2010},{"doi":"10.1186/gb-2005-6-5-r44","pubmed":"15892872","title":"The Sequence Ontology: a tool for the unification of genome annotations","url":"http://doi.org/10.1186/gb-2005-6-5-r44","year":2005},{"doi":"10.1016/j.jbi.2010.03.002","pubmed":"20226267","title":"Evolution of the Sequence Ontology terms and relationships","url":"http://doi.org/10.1016/j.jbi.2010.03.002","year":2010}],"repository":"https://github.com/The-Sequence-Ontology/SO-Ontologies","short_names":["SO"]},"biocontext":{"prefix":"SO","uri_format":"http://purl.obolibrary.org/obo/SO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sopharm":{"prefix":"sopharm","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Adrien Coulet","orcid":"0000-0002-1466-062X","email":"adrien.coulet@loria.fr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SOPHARM","biocontext":"SOPHARM","bioportal":"SOPHARM","fairsharing":"FAIRsharing.nttge3","obofoundry":"sopharm"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"Adrien.Coulet@loria.fr","name":"Adrien Coulet"},"domain":"chemistry and biochemistry","homepage":"http://www.loria.fr/~coulet/sopharm2.0_description.php","name":"Suggested Ontology for Pharmacogenomics","preferred_prefix":"SOPHARM","prefix":"sopharm","status":"inactive","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"adrien.coulet@loria.fr","name":"Adrien Coulet"},"description":"SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.","name":"Suggested Ontology for Pharmacogenomics","prefix":"SOPHARM","version":"Version: SO-Pharm 2.2\nRelease: 02 Mar 2017"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SOPHARM/18/sopharm.owl"}],"description":"SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.","homepage":"https://members.loria.fr/ACoulet/files/sopharm2.0_description.php","name":"Suggested Ontology for Pharmacogenomics","prefix":"SOPHARM","version":"The new release (March 02, 2017) 2.2 includes concept and properties labels in French.\nImports have been abandoned in favor of simple references to distant URI"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"Adrien.Coulet@loria.fr","name":"Adrien Coulet","orcid":"0000-0002-1466-062X"},"description":"SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal, SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics.","homepage":"https://obofoundry.org/ontology/sopharm.html","keywords":["Life Science","Pharmacogenomics","Preclinical Studies","Biomedical Science","drug","chemical entity","phenotype","genotype"],"name":"Suggested Ontology for PHARMacogenomics","prefix":"FAIRsharing.nttge3","publications":[{"doi":"10.1007/978-1-4419-7046-6_36","pubmed":"21431576","title":"Ontology-based knowledge discovery in pharmacogenomics","url":"http://doi.org/10.1007/978-1-4419-7046-6_36","year":2011}],"short_names":["SOPHARM"]},"biocontext":{"prefix":"SOPHARM","uri_format":"http://purl.obolibrary.org/obo/SOPHARM_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sosa":{"prefix":"sosa","name":"Sensor, Observation, Sample, and Actuator Ontology","description":"This ontology is based on the SSN Ontology by the W3C Semantic Sensor Networks Incubator Group (SSN-XG), together with considerations from the W3C/OGC Spatial Data on the Web Working Group.","pattern":null,"uri_format":"http://www.w3.org/ns/sosa/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/TR/vocab-ssn/","repository":"https://github.com/w3c/sdw","contact":{"name":"Simon Cox","orcid":"0000-0002-3884-3420","email":"dr.shorthair@pm.me","github":"dr-shorthair"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"FeatureOfInterest","example_extras":null,"example_decoys":null,"license":"http://www.w3.org/Consortium/Legal/2015/copyright-software-and-document","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://www.w3.org/ns/sosa/","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"agroportal":"SOSA","lov":"sosa","tib":"sosa","zazuko":"sosa"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.1016/j.websem.2018.06.003","pmc":null,"title":"SOSA: A lightweight ontology for sensors, observations, samples, and actuators","year":2019},{"pubmed":null,"doi":"10.1016/j.websem.2018.06.003","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Philip Strömert","orcid":"0000-0002-1595-3213","email":"philip.stroemert@tib.eu","github":"StroemPhi"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1274,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":{"contact":{"email":"simon.cox@csiro.au","name":"Simon Cox"},"description":"This ontology is based on the SSN Ontology by the W3C Semantic Sensor Networks Incubator Group (SSN-XG), together with considerations from the W3C/OGC Spatial Data on the Web Working Group.","extras":{"example_uri":"http://www.w3.org/ns/sosa/Observation"},"homepage":"https://www.w3.org/TR/vocab-ssn/","license":{"name":"http://www.w3.org/Consortium/Legal/2015/copyright-software-and-document"},"name":"Sensor, Observation, Sample, and Actuator Ontology","prefix":"SOSA","publications":[{"url":"http://www.semantic-web-journal.net/system/files/swj1804.pdf"},{"doi":"10.1016/j.websem.2018.06.003"}],"repository":"https://github.com/w3c/sdw","version":"V-2017"},"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology is based on the SSN Ontology by the W3C Semantic Sensor Networks Incubator Group (SSN-XG), together with considerations from the W3C/OGC Spatial Data on the Web Working Group.","homepage":"http://www.w3.org/ns/sosa/","keywords":["Environment","IoT"],"name":"Sensor, Observation, Sample, and Actuator (SOSA) Ontology","prefix":"sosa","uri_format":"http://www.w3.org/ns/sosa/$1"},"zazuko":{"prefix":"sosa","uri_format":"http://www.w3.org/ns/sosa/$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"contact":{"email":"public-sdw-comments@w3.org"},"description":"This ontology is based on the SSN Ontology by the W3C Semantic Sensor Networks Incubator Group (SSN-XG), together with considerations from the W3C/OGC Spatial Data on the Web Working Group.","homepage":"https://www.w3.org/TR/vocab-ssn/","keywords":["NFDI4ING","NFDI4CHEM","ESS","engineering"],"name":"Sensor, Observation, Sample, and Actuator (SOSA) Ontology","prefix":"sosa","tracker":"https://github.com/w3c/sdw/issues","uri_format":"http://www.w3.org/ns/sosa/$1"}},"soybase":{"prefix":"soybase","name":"SoyBase","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SOYBASE","integbio":"nbdc01817","miriam":"soybase","n2t":"soybase","ncbi":"SoyBase","pathguide":"44","prefixcommons":"soy","re3data":"r3d100010846"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20008513","doi":"10.1093/nar/gkp798","pmc":"PMC2808871","title":"SoyBase, the USDA-ARS soybean genetics and genomics database","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SoyBase is a repository for curated genetics, genomics and related data resources for soybean.","examples":["BARC-013845-01256"],"extras":{"miriam_id":"00000291","namespaceEmbeddedInLui":false},"homepage":"http://soybase.org/","name":"SoyBase","pattern":"^\\w+(\\-)?\\w+(\\-)?\\w+$","prefix":"soybase","status":"active","uri_format":"https://legacy.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"},"n2t":{"description":"SoyBase is a repository for curated genetics, genomics and related data resources for soybean.","examples":["BARC-013845-01256"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://soybase.org/","name":"SoyBase at Iowa State University","pattern":"^\\w+(\\-)?\\w+(\\-)?\\w+$","prefix":"soybase","uri_format":"http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"},"prefixcommons":{"description":"Growth, trait and development ontology for soybean","examples":["SOY_0001650"],"homepage":"http://soybase.org","keywords":["obo","development","phenotype","spider"],"name":"SoyOntology","pattern":"^SOY_\\d{7}$","prefix":"soy","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/soy:$1"}],"xrefs":{"bioportal":"3028"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["Satt005"],"homepage":"http://soybase.org","name":"Glycine max Genome Database","prefix":"SoyBase"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SOYBASE","uri_format":"http://identifiers.org/soybase/$1"},"edam":null,"re3data":{"description":"SoyBase is a professionally curated repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. SoyBase includes annotated \"Williams 82\" genomic sequence and associated data mining tools. The repository maintains controlled vocabularies for soybean growth, development, and traits that are linked to more general plant ontologies.","homepage":"https://www.soybase.org/","name":"SoyBase","prefix":"r3d100010846","prefix_synonyms":["SoyBase and the Soybean Breeder's Toolbox"],"xrefs":{"doi":"10.17616/R3S032","nif":"0000-03483"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.","homepage":"https://soybase.org/","keywords":["Organism","Genome/Gene","Genetic variation","DNA","Protein","Phenotype","Ontology/Terminology/Nomenclature","Expression","Image/Movie","Interaction/Pathway","Sequence","Method"],"name":"SoyBase","prefix":"nbdc01817","publications":[{"pubmed":"20008513"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.z4agsr"}},"pathguide":{"homepage":"http://soybase.org/","name":"USDA-ARS Soybean Genetics and Genome Database","prefix":"44","short_names":["SoyBase"]},"tib":null},"span":{"prefix":"span","name":"Span","description":"Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["bfo11span"],"keywords":["ontology","upper-level ontology"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"see also snap. This ontology only exists in description in the paper and does not have an associated web resource","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sparcdrs":{"prefix":"sparcdrs","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"sparc.drs"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The SPARC Data Repository Service (DRS) is an implementation of the Global Alliance for Genomics and Health (GA4GH) DRS specification that provides a standardized API that enables researchers and other data consumers to access and retrieve data objects from various data repositories in a consistent and cloud-agnostic way. This implementation provides information for data objects in the SPARC repository (sparc.science).","examples":["package/8ca67504-3167-4cc8-ba74-98137bb7cd0a"],"extras":{"miriam_id":"00001102","namespaceEmbeddedInLui":false},"homepage":"https://www.fdilab.org","name":"SPARC DRS","pattern":"(?:[a-zA-Z]+\\/)?[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}","prefix":"sparc.drs","status":"active","uri_format":"https://services.scicrunch.io/sparc/drs/v1/package/$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sparql":{"prefix":"sparql","name":"SPARQL Operation","description":"Used for operations in SPARQL, such as ceil() and bound().","pattern":null,"uri_format":"http://www.w3.org/ns/sparql#$1","uri_format_resolvable":null,"rdf_uri_format":"http://www.w3.org/ns/sparql#$1","providers":null,"homepage":"https://www.w3.org/ns/sparql","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ceil","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"spbase":{"prefix":"spbase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"integbio":"nbdc00686","prefixcommons":"spbase"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.","examples":["SPU_000001"],"homepage":"http://spbase.org","keywords":["genome","DNA","RNA"],"name":"SpBase","pattern":"^SPU_\\d+$","prefix":"spbase","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/spbase:$1"}],"uri_format":"http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SpBase is a database of the sea urchin genome. In addition to a genome browser, the database contains several types of sequence and gene expression information as well as links to external resources. Bulk data is available for download.","homepage":"http://www.spbase.org/SpBase/","keywords":["Genome/Gene","cDNA/EST","Sequence","Expression"],"name":"Strongylocentrotus purpuratus database","prefix":"nbdc00686","publications":[{"pubmed":"19010966"}],"short_names":["SpBase"]},"pathguide":null,"tib":null},"spd":{"prefix":"spd","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SPD_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/spd.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SPD","biocontext":"SPD","bioportal":"SPD","fairsharing":"FAIRsharing.yecp83","obofoundry":"spd","ols":"spd","ontobee":"SPD","prefixcommons":"spdo","wikidata":"P4537","wikidata.entity":"Q42404539"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.3390/d11100202","pmc":null,"title":"The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).","examples":["SPD_0000464"],"homepage":"http://research.amnh.org/atol/files/","keywords":["obo","anatomy","spider"],"name":"Spider Ontology","pattern":"^SPD_\\d{7}$","prefix":"spdo","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/spdo:$1"}],"xrefs":{"bioportal":"1091"}},"wikidata":{"description":"identifier for the Spider Ontology which provides a controlled vocabulary for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)","examples":["0000200","0000623"],"name":"Spider Ontology ID","pattern":"^[0-9]{7}$","prefix":"P4537","uri_format":"http://purl.obolibrary.org/obo/SPD_$1","uri_format_rdf":"http://purl.obolibrary.org/obo/SPD_$1","xrefs":{"miriam":"SPD"}},"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/spd.owl"}],"contact":{"email":"ramirez@macn.gov.ar","github":"martinjramirez","name":"Martin Ramirez","orcid":"0000-0002-0358-0130"},"description":"An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).","domain":"anatomy and development","homepage":"http://research.amnh.org/atol/files/","license":{"name":"CC BY 3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Spider Ontology","preferred_prefix":"SPD","prefix":"spd","publications":[{"doi":"10.3390/d11100202","title":"The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data"}],"repository":"https://github.com/obophenotype/spider-ontology","status":"active","taxon":{"identifier":"6893","name":"spiders","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"michalik@uni-greifswald.de","name":"Peter Michalik"},"description":"An ontology for spider anatomy.","name":"Spider Anatomy Ontology","prefix":"SPD","version":"1.1"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/spd.owl"}],"description":"An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).","homepage":"http://research.amnh.org/atol/files/","name":"Spider Ontology","prefix":"spd","tracker":"https://github.com/obophenotype/spider-ontology/issues"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SPD/26/spd.owl"}],"description":"An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).","homepage":"http://research.amnh.org/atol/files/","name":"Spider Ontology","prefix":"SPD"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Spider Ontology","prefix":"SPD"},"cheminf":null,"fairsharing":{"contact":{"email":"ramirez@macn.gov.ar","name":"Martin Ramirez","orcid":"0000-0002-0358-0130"},"description":"An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).","homepage":"https://github.com/obophenotype/spider-ontology","keywords":["Life Science","Anatomy","behavior"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Spider Anatomy Ontology","prefix":"FAIRsharing.yecp83","publications":[{"doi":"10.3390/d11100202","title":"The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data","url":"http://dx.doi.org/10.3390/d11100202","year":2019}],"short_names":["SPD"]},"biocontext":{"prefix":"SPD","uri_format":"http://purl.obolibrary.org/obo/SPD_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"spdx":{"prefix":"spdx","name":"Software Package Data Exchange License","description":null,"pattern":"^[0-9A-Za-z\\-.\\+]+$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://spdx.org/licenses","repository":"https://github.com/spdx/license-list-data","contact":{"name":"Gary O'Neall","orcid":null,"email":"gary@sourceauditor.com","github":"goneall"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":["GPL-1.0+"],"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/spdx/spdx.owl","download_obo":"https://w3id.org/biopragmatics/resources/spdx/spdx.obo","download_json":"https://w3id.org/biopragmatics/resources/spdx/spdx.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"bartoc":"20514","miriam":"spdx","n2t":"spdx"},"synonyms":["spdx.license","spdx.licenses"],"keywords":["license"],"domain":"license","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://spdx.dev/wp-content/uploads/sites/31/2023/08/logo-color.svg","miriam":{"description":"The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.","examples":["CC-BY-1.0"],"extras":{"miriam_id":"00000687","namespaceEmbeddedInLui":false},"homepage":"https://spdx.org","name":"SPDX License List","pattern":"^[0-9A-Za-z\\-.]+$","prefix":"spdx","status":"active","uri_format":"https://spdx.org/licenses/$1"},"n2t":{"description":"The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.","examples":["CC-BY-1.0"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://spdx.org","name":"SPDX License List","pattern":"^[0-9A-Za-z\\-.]+$","prefix":"spdx","uri_format":"https://spdx.org/licenses/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The SPDX License List is an integral part of the SPDX Specification. The SPDX License List itself is a list of commonly found licenses and exceptions used in free and open or collaborative software, data, hardware, or documentation. The SPDX License List includes a standardized short identifier, the full name, the license text, and a canonical permanent URL for each license and exception.\n\nThe purpose of the SPDX License List is to enable efficient and reliable identification of such licenses and exceptions in an SPDX document, in source files or elsewhere.","homepage":"https://spdx.org/licenses/","license":{"spdx":"CC0-1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"SPDX License List","pattern":"^.+$","prefix":"20514","uri_format":"https://spdx.org/licenses/$1"},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"spdx.term":{"prefix":"spdx.term","name":"Software Package Data Exchange RDF Vocabulary","description":"A dictionary of named properties and classes for Software Package Data Exchange (SPDX) - an open standard for communicating software bill of material information, including components, licenses, copyrights, and security references. SPDX reduces redundant work by providing a common format for companies and communities to share important data, thereby streamlining and improving compliance. [from homepage]","pattern":null,"uri_format":"http://spdx.org/rdf/terms#$1","uri_format_resolvable":null,"rdf_uri_format":"http://spdx.org/rdf/terms#$1","providers":null,"homepage":"https://spdx.org/rdf/terms/","repository":null,"contact":{"name":"Gary O'Neall","orcid":null,"email":"gary@sourceauditor.com","github":"goneall"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"annotation","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["spdx.terms"],"keywords":null,"domain":"schema","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1598,"logo":"https://spdx.dev/wp-content/uploads/sites/31/2023/08/logo-color.svg","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sphn":{"prefix":"sphn","name":"Swiss Personalized Health Network Schema","description":"The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/).","pattern":"^\\S+$","uri_format":"https://biomedit.ch/rdf/sphn-ontology/sphn#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.sphn.ch","repository":"https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology","contact":{"name":"Sabine Oesterle","orcid":"0000-0003-3248-7899","email":"Sabine.Oesterle@sib.swiss","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Allergy","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/raw/master/rdf_schema/sphn_rdf_schema.owl","download_obo":null,"download_json":null,"download_rdf":"https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/raw/master/rdf_schema/sphn_rdf_schema.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"schema","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Deepak Unni","orcid":"0000-0002-3583-7340","email":"deepak.unni3@gmail.com","github":"deepakunni3"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":535,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"spike.map":{"prefix":"spike.map","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Yosef Shiloh","orcid":"0000-0002-1538-6060","email":"Yossih@tauex.tau.ac.il","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SPIKE.MAP","miriam":"spike.map","n2t":"spike.map","prefixcommons":"spike"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"21097778","doi":"10.1093/nar/gkq1167","pmc":"PMC3014840","title":"SPIKE: a database of highly curated human signaling pathways","year":2010},{"pubmed":"18289391","doi":"10.1186/1471-2105-9-110","pmc":"PMC2263022","title":"SPIKE--a database, visualization and analysis tool of cellular signaling pathways","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.","examples":["spike00001"],"extras":{"miriam_id":"00000321","namespaceEmbeddedInLui":false},"homepage":"http://www.cs.tau.ac.il/~spike/","name":"SPIKE Map","pattern":"^spike\\d{5}$","prefix":"spike.map","status":"active","uri_format":"http://www.cs.tau.ac.il/~spike/maps/$1.html"},"n2t":{"description":"SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.","examples":["spike00001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.cs.tau.ac.il/~spike/","name":"SPIKE database at Tel Aviv University","pattern":"^spike\\d{5}$","prefix":"spike.map","uri_format":"http://www.cs.tau.ac.il/~spike/maps/$1.html"},"prefixcommons":{"description":"SPIKE (Signaling Pathway Integrated Knowledge Engine) is an interactive software environment that graphically displays biological signaling networks, allows dynamic layout and navigation through these networks, and enables the superposition of DNA microarray and other functional genomics data on interaction maps.","examples":["spike00001"],"homepage":"http://www.cs.tau.ac.il/~spike/","keywords":["pathway","DNA","gene expression"],"name":"Signaling Pathway Integrated Knowledge Engine","pattern":"^spike\\d{5}$","prefix":"spike","prefix_synonyms":["spike.map"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/spike:$1"}],"publications":[{"pubmed":"18289391"},{"pubmed":"21097778"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SPIKE.MAP","uri_format":"http://identifiers.org/spike.map/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"splash":{"prefix":"splash","name":"Spectra Hash Code","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SPLASH","fairsharing":"FAIRsharing.f31b8f","miriam":"splash","n2t":"splash"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance.","examples":["splash10-0zq2000000-77302b0326a418630a84"],"extras":{"miriam_id":"00000566","namespaceEmbeddedInLui":false},"homepage":"http://mona.fiehnlab.ucdavis.edu/","name":"SPLASH","pattern":"^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$","prefix":"splash","status":"active","uri_format":"http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"},"n2t":{"description":"The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance.","examples":["splash10-0zq2000000-77302b0326a418630a84"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://mona.fiehnlab.ucdavis.edu/","name":"Mass Bank of North America (MoNA)","pattern":"^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$","prefix":"splash","uri_format":"http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"ofiehn@ucdavis.edu","name":"Oliver Fiehn","orcid":"0000-0002-6261-8928"},"description":"The SPLASH (SPectraL hASH) identifier is a unique and unambiguous database-independent spectral identifier for chemical structures. It contains four separate blocks that define different layers of information, separated by dashes. The first block is the SPLASH identifier, the second and third are spectral summary blocks, and the fourth is the full spectrum hash block. The first block (splash10) encodes the SPLASH identifier, starting with letters for semantic web compatibility, followed by a number representing the measurement type (1 for MS, 2 and above for other data types to be included in the future) and the SPLASH version number, starting at 0, to allow future specification updates. The the second and third blocks are , intensities are summed over fixed (but different) bin sizes and wrapped over ten bins. The second block (0002) is formed using a reduced spectrum (the top ten or fewer ions greater than 10% of the base peak). This reduced spectrum is summed over bins of 5 Da. Each bin is then scaled to a single-digit integral value in base 3 (0–2), and the resulting 10 digit histogram is converted to a base 36 number, resulting in a 4-digit block. In the third block (0900000000) the intensities are summed over 100-Da bin sizes, each bin is then scaled to a single-digit, integral base-10 digit (0–9). The fourth block (full spectrum hash) is represented by a Secure Hash Algorithm SHA256 (numbers and lowercase letters only), calculated in hexadecimal notation and truncated to 20 characters. The full spectrum string of m/z and relative intensity pairs are sorted by ascending m/z and then by descending intensity. The m/z value is multiplied by 10^6, cast to a long (64-bit) integer and joined with the normalized intensity as strings separated by a colon. The resulting ion pairs are then joined, delimited by a single space.","homepage":"https://splash.fiehnlab.ucdavis.edu/","keywords":["Lipidomics","Metabolomics","Proteomics","Mass spectrum"],"license":{"url":"https://opensource.org/licenses/BSD-3-Clause"},"name":"The Spectral Hash Identifier","prefix":"FAIRsharing.f31b8f","publications":[{"doi":"10.1038/nbt.3689","pubmed":"27824832","title":"SPLASH, a hashed identifier for mass spectra","url":"https://doi.org/10.1038/nbt.3689","year":2016}],"repository":"https://github.com/berlinguyinca/spectra-hash","short_names":["SPLASH"]},"biocontext":{"prefix":"SPLASH","uri_format":"http://identifiers.org/splash/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"splicenest":{"prefix":"splicenest","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"splicenest"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome.","examples":["Hs635"],"homepage":"http://splicenest.molgen.mpg.de/","keywords":["gene","DNA","genome"],"name":"SpliceNest","pattern":"^[a-z]+\\d+$","prefix":"splicenest","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/splicenest:$1"}],"uri_format":"http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"spp":{"prefix":"spp","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"miriam":"spp","re3data":"r3d100013650"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"31672983","doi":"10.1038/s41597-019-0193-4","pmc":"PMC6823428","title":"The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways","year":2019}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.","examples":["10.1621/vwN2g2HaX3"],"extras":{"miriam_id":"00000726","namespaceEmbeddedInLui":false},"homepage":"https://www.signalingpathways.org/index.jsf","name":"Signaling Pathways Project","pattern":"^10.\\w{4}/\\w{10}$","prefix":"spp","status":"active","uri_format":"https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"The goal of the Signaling Pathways Project knowledgebase is to allow bench researchers to routinely ask sophisticated questions of the universe of multi-omics data points generated by the cellular signaling community.\nSPP is dedicated to helping researchers to make sense of the often overwhelming volume of multi-omics information in the field of cellular signaling.","homepage":"https://www.signalingpathways.org/datasets/index.jsf","name":"Signaling Pathways Project","prefix":"r3d100013650","prefix_synonyms":["SSP"],"xrefs":{"doi":"10.17616/R31NJN0Y"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"srao":{"prefix":"srao","name":"FAIRsharing Subject Ontology","description":null,"pattern":"^\\d{7}$","uri_format":"http://www.fairsharing.org/ontology/subject/SRAO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/FAIRsharing/subject-ontology","contact":{"name":"Allyson Lister","orcid":"0000-0002-7702-4495","email":"allyson.lister@oerc.ox.ac.uk","github":"allysonlister"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000400","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"fairsharing","provides":null,"download_owl":"https://github.com/FAIRsharing/subject-ontology/raw/refs/heads/master/SRAO.owl","download_obo":"https://github.com/FAIRsharing/subject-ontology/raw/refs/heads/master/SRAO.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.b1xD9f","ols":"srao"},"synonyms":null,"keywords":["metascience","topics"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"https://github.com/FAIRsharing/subject-ontology/raw/master/SRAO.owl"}],"contact":{"email":"contact@fairsharing.org"},"description":"The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.","extras":{"version.iri":"http://www.fairsharing.org/ontology/subject/SRAO/releases/2025-06-01/SRAO.owl"},"homepage":"https://github.com/FAIRsharing/subject-ontology","name":"FAIRsharing Subject Ontology (SRAO)","prefix":"srao","uri_format":"http://www.fairsharing.org/ontology/subject$1","version":"2025-06-01"},"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Subject Resource Application Ontology (SRAO) is an application ontology describing subject areas / academic disciplines used within FAIRsharing records by curators and the user community. It is built in conjunction with the Domain Resource Application Ontology (DRAO), which contains more specific domain terms and other descriptors. All classes within SRAO come from publicly-available ontologies and controlled vocabularies.","homepage":"https://github.com/FAIRsharing/subject-ontology","keywords":["Agriculture","Environmental Science","Life Science","Computer Science","Biomedical Science","Humanities","Natural Science","Earth Science","Metadata standardization","Resource metadata","Classification","FAIR"],"license":{"name":"CC BY-SA 4.0","url":"https://creativecommons.org/licenses/by-sa/4.0/"},"name":"Subject Resource Application Ontology","prefix":"FAIRsharing.b1xD9f","repository":"https://github.com/FAIRsharing/subject-ontology/issues","short_names":["SRAO"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ssbd.dataset":{"prefix":"ssbd.dataset","name":"System Science of Biological Dynamics dataset","description":"Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.","pattern":"^\\d+$","uri_format":"https://ssbd.riken.jp/database/dataset/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ssbd.riken.jp","repository":null,"contact":{"name":"Shuichi Onami","orcid":"0000-0002-8255-1724","email":"sonami@riken.jp","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27412095","doi":"10.1093/bioinformatics/btw417","pmc":"PMC5181557","title":"SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena","year":2016}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ssbd.project":{"prefix":"ssbd.project","name":"System Science of Biological Dynamics project","description":"Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.","pattern":"^\\d+$","uri_format":"https://ssbd.riken.jp/database/project/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ssbd.riken.jp","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":"project","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ssn":{"prefix":"ssn","name":"Semantic Sensor Network Ontology","description":"This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","pattern":null,"uri_format":"http://www.w3.org/ns/ssn/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/TR/vocab-ssn","repository":"https://github.com/w3c/sdw-sosa-ssn","contact":{"name":"Simon Cox","orcid":"0000-0002-3884-3420","email":"dr.shorthair@pm.me","github":"dr-shorthair"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"hasProperty","example_extras":null,"example_decoys":null,"license":"http://www.w3.org/Consortium/Legal/2015/copyright-software-and-document","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://www.w3.org/ns/ssn/","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SSN","agroportal":"SSN","bioportal":"SSN","fairsharing":"FAIRsharing.c0bvcy","lov":"ssn","tib":"ssn","zazuko":"ssn"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Philip Strömert","orcid":"0000-0002-1595-3213","email":"philip.stroemert@tib.eu","github":"StroemPhi"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1272,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"jgraybeal@stanford.edu","name":"John Graybeal"},"description":"This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","name":"Semantic Sensor Network Ontology","prefix":"SSN","version":"New modular version of the SSN ontology. \n\nThis ontology was originally developed in 2009-2011 by the W3C Semantic Sensor Networks Incubator Group (SSN-XG). For more information on the group's activities see: http://www.w3.org/2005/Incubator/ssn/. The ontology was revised and modularized in 2015-2017 by the W3C/OGC Spatial Data on the Web Working Group, see: https://www.w3.org/2015/spatial/wiki/Semantic_Sensor_Network_Ontology. \n\nIn particular, (a) the scope is extended to include actuation and sampling; (b) the core concepts and properties are factored out into the SOSA ontology. The SSN ontology imports SOSA and adds formal axiomatization consistent with the text definitions in SOSA, and adds classes and properties to accommodate the scope of the original SSN ontology."},"ecoportal":null,"agroportal":{"contact":{"email":"simon.cox@csiro.au","name":"Simon Cox"},"description":"This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","extras":{"example_uri":"http://www.w3.org/ns/ssn/Stimulus"},"homepage":"https://www.w3.org/TR/vocab-ssn/","license":{"name":"http://www.w3.org/Consortium/Legal/2015/copyright-software-and-document"},"name":"Semantic Sensor Network Ontology","prefix":"SSN","publications":[{"doi":"10.3233/SW-180320"}],"repository":"https://github.com/w3c/sdw","version":"New modular version of the SSN ontology. \n\nThis ontology was originally developed in 2009-2011 by the W3C Semantic Sensor Networks Incubator Group (SSN-XG). For more information on the group's activities see: http://www.w3.org/2005/Incubator/ssn/. The ontology was revised and modularized in 2015-2017 by the W3C/OGC Spatial Data on the Web Working Group, see: https://www.w3.org/2015/spatial/wiki/Semantic_Sensor_Network_Ontology. \n\nIn particular, (a) the scope is extended to include actuation and sampling; (b) the core concepts and properties are factored out into the SOSA ontology. The SSN ontology imports SOSA and adds formal axiomatization consistent with the text definitions in SOSA, and adds classes and properties to accommodate the scope of the original SSN ontology."},"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SSN/2/ssn.owl"}],"description":"This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","homepage":"https://www.w3.org/TR/vocab-ssn/","name":"Semantic Sensor Network Ontology","prefix":"SSN","version":"New modular version of the SSN ontology. \n\nThis ontology was originally developed in 2009-2011 by the W3C Semantic Sensor Networks Incubator Group (SSN-XG). For more information on the group's activities see: http://www.w3.org/2005/Incubator/ssn/. The ontology was revised and modularized in 2015-2017 by the W3C/OGC Spatial Data on the Web Working Group, see: https://www.w3.org/2015/spatial/wiki/Semantic_Sensor_Network_Ontology. \n\nIn particular, (a) the scope is extended to include actuation and sampling; (b) the core concepts and properties are factored out into the SOSA ontology. The SSN ontology imports SOSA and adds formal axiomatization consistent with the text definitions in SOSA, and adds classes and properties to accommodate the scope of the original SSN ontology."},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Semantic Sensor Network (SSN) ontology is an ontology for describing sensors and their observations, the involved procedures, the studied features of interest, the samples used to do so, and the observed properties, as well as actuators. SSN follows a horizontal and vertical modularization architecture by including a lightweight but self-contained core ontology called SOSA (Sensor, Observation, Sample, and Actuator) for its elementary classes and properties. With their different scope and different degrees of axiomatization, SSN (http://www.w3.org/ns/ssn/) and SOSA (http://www.w3.org/ns/sosa/) are able to support a wide range of applications and use cases, including satellite imagery, large-scale scientific monitoring, industrial and household infrastructures, social sensing, citizen science, observation-driven ontology engineering, and the Web of Things. ","homepage":"https://www.w3.org/TR/vocab-ssn/","keywords":["Remote Sensing","Sensor data","Web of Things","Resource metadata","Imaging","Monitoring"],"license":{"url":"https://www.w3.org/Consortium/Legal/2015/doc-license"},"name":"Semantic Sensor Network Ontology","prefix":"FAIRsharing.c0bvcy","publications":[{"doi":"10.1016/j.websem.2012.05.003","title":"The SSN ontology of the W3C semantic sensor network incubator group","url":"http://dx.doi.org/10.1016/j.websem.2012.05.003","year":2012},{"doi":"10.3233/sw-180320","title":"The Modular SSN Ontology: A Joint W3C and OGC Standard Specifying the Semantics of Sensors, Observations, Sampling, and Actuation","url":"http://www.semantic-web-journal.net/content/modular-ssn-ontology-joint-w3c-and-ogc-standard-specifying-semantics-sensors-observations","year":2019},{"doi":"10.1016/j.websem.2018.06.003","title":"SOSA: A lightweight ontology for sensors, observations, samples, and actuators","url":"https://www.sciencedirect.com/science/article/pii/S1570826818300295?via%3Dihub","year":2018}],"repository":"https://github.com/w3c/sdw/issues","short_names":["SSN"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"This ontology describes sensors and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","homepage":"http://www.w3.org/ns/ssn/","keywords":["IoT","Methods","W3C Rec"],"name":"Semantic Sensor Network Ontology","prefix":"ssn","uri_format":"http://www.w3.org/ns/ssn/$1"},"zazuko":{"prefix":"ssn","uri_format":"http://www.w3.org/ns/ssn/$1"},"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://www.w3.org/ns/ssn/ssn.ttl"}],"description":"This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports.","homepage":"https://www.w3.org/TR/vocab-ssn/","keywords":["NFDI4ING","NFDI4CHEM","ESS","engineering"],"name":"Semantic Sensor Network Ontology","prefix":"ssn","tracker":"https://github.com/w3c/sdw/issues","uri_format":"http://www.w3.org/ns/ssn/$1"}},"ssn.system":{"prefix":"ssn.system","name":"System capabilities, operating ranges, and survival ranges ontology","description":"This ontology describes system capabilities, operating ranges, and survival ranges. Please report any errors to the W3C Spatial Data on the Web Working Group via the SDW WG Public List public-sdw-wg@w3.org","pattern":null,"uri_format":"http://www.w3.org/ns/ssn/systems/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/TR/vocab-ssn/","repository":null,"contact":{"name":"Simon Cox","orcid":"0000-0002-3884-3420","email":"dr.shorthair@pm.me","github":"dr-shorthair"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"qualityOfObservation","example_extras":null,"example_decoys":null,"license":"http://www.w3.org/Consortium/Legal/2015/copyright-software-and-document","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"http://www.w3.org/ns/ssn/systems","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"ssnsystem"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Philip Strömert","orcid":"0000-0002-1595-3213","email":"philip.stroemert@tib.eu","github":"StroemPhi"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1270,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://www.w3.org/ns/ssn/systems/ssn-system.rdf"}],"contact":{"email":"public-sdw-comments@w3.org"},"description":"This ontology describes system capabilities, operating ranges, and survival ranges.","homepage":"https://www.w3.org/TR/vocab-ssn/#System-capabilities","keywords":["NFDI4ING","NFDI4CHEM","engineering"],"name":"System capabilities, operating ranges, and survival ranges ontology","prefix":"ssnsystem","tracker":"https://github.com/w3c/sdw/issues","uri_format":"http://www.w3.org/ns/ssn/systems/$1"}},"ssrn.article":{"prefix":"ssrn.article","name":"Social Science Research Network Article","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ssrn.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P893"},"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an article/paper at the SSRN","examples":["1667659","3345366","956170"],"name":"SSRN article ID","prefix":"P893","uri_format":"https://ssrn.com/abstract=$1","xrefs":{"wikidata":"Q7550801"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"ssrn.author":{"prefix":"ssrn.author","name":"Social Science Research Network Author","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ssrn.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P3747"},"synonyms":null,"keywords":["person","researcher"],"domain":null,"references":["https://github.com/biopragmatics/bioregistry/pull/1171"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for an author at the Social Science Research Network","examples":["112517","1585413","9"],"name":"SSRN author ID","pattern":"^[1-9]\\d{0,7}$","prefix":"P3747","uri_format":"https://ssrn.com/author=$1","xrefs":{"wikidata":"Q7550801"}},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sssom":{"prefix":"sssom","name":"Simple Standard for Sharing Ontological Mappings","description":"SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace.","pattern":"^[A-Za-z_]+$","uri_format":"https://w3id.org/sssom/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://w3id.org/sssom","repository":"https://github.com/mapping-commons/sssom","contact":{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"mapping_justification","example_extras":["superClassOf"],"example_decoys":null,"license":"BSD-3-Clause","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Nicolas Matentzoglu","orcid":"0000-0002-7356-1779","email":"nicolas.matentzoglu@gmail.com","github":"matentzn"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":759,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sstoss":{"prefix":"sstoss","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"sstoss"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies.","examples":["01.01.005"],"homepage":"http://caps.ncbs.res.in/SSTOSS/index.htm","keywords":["protein","structure"],"name":"Sequence-Structural Templates of Single-member Superfamilies","pattern":"^\\d+.\\d+.\\d+$","prefix":"sstoss","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/sstoss:$1"}],"uri_format":"http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"stap":{"prefix":"stap","name":"Statistical Torsional Angles Potentials","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Bong Hyun Sung","orcid":"0000-0002-8992-1118","email":"bhsung@kribb.re.kr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"STAP","miriam":"stap","n2t":"stap"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26504145","doi":"10.1093/bioinformatics/btv595","pmc":null,"title":"NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores","year":2015},{"pubmed":"25279564","doi":"10.1371/journal.pone.0108888","pmc":"PMC4184813","title":"Protein NMR structures refined without NOE data","year":2014},{"pubmed":"23408564","doi":"10.1002/prot.24265","pmc":null,"title":"Statistical torsion angle potential energy functions for protein structure modeling: a bicubic interpolation approach","year":2013},{"pubmed":"22102572","doi":"10.1093/nar/gkr1021","pmc":"PMC3245188","title":"STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures","year":2011}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).","examples":["1a24"],"extras":{"miriam_id":"00000399","namespaceEmbeddedInLui":false},"homepage":"http://psb.kobic.re.kr/STAP/refinement/","name":"STAP","pattern":"^[0-9][A-Za-z0-9]{3}$","prefix":"stap","status":"deprecated","uri_format":"http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"},"n2t":{"description":"STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).","examples":["1a24"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://psb.kobic.re.kr/STAP/refinement/","name":"STAP at Korean Bioinformation Center","pattern":"^[0-9][A-Za-z0-9]{3}$","prefix":"stap","uri_format":"http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"STAP","uri_format":"http://identifiers.org/stap/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"stato":{"prefix":"stato","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/STATO_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000288","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"STATO","biocontext":"STATO","bioportal":"STATO","fairsharing":"FAIRsharing.na5xp","miriam":"stato","obofoundry":"stato","ols":"stato","ontobee":"STATO","tib":"stato","wikidata.entity":"Q83428681"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.","examples":["0000138"],"extras":{"miriam_id":"00001051","namespaceEmbeddedInLui":true},"homepage":"https://www.ebi.ac.uk","name":"Statistical Ontology","pattern":"^STATO:\\d+$","prefix":"stato","status":"active","uri_format":"https://www.ebi.ac.uk/ols4/ontologies/stato/classes?obo_id=STATO:$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["ontoavida","psdo","scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/stato.owl"}],"contact":{"email":"proccaserra@gmail.com","github":"proccaserra","name":"Philippe Rocca-Serra","orcid":"0000-0001-9853-5668"},"description":"STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.","domain":"information technology","homepage":"http://stato-ontology.org/","license":{"name":"CC BY 3.0","url":"http://creativecommons.org/licenses/by/3.0/"},"logo":"https://raw.githubusercontent.com/ISA-tools/stato/dev/images/stato-logo-3.png","name":"The Statistical Methods Ontology","preferred_prefix":"STATO","prefix":"stato","publications":[{"pubmed":"31831744","title":"Experiment design driven FAIRification of omics data matrices, an exemplar"},{"pubmed":"32109232","title":"Semantic concept schema of the linear mixed model of experimental observations"}],"repository":"https://github.com/ISA-tools/stato","status":"active"},"bioportal":{"contact":{"email":"alejandra.gonzalez.beltran@gmail.com","name":"Alejandra Gonzalez-Beltran"},"description":"STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.","homepage":"http://stato-ontology.org/","name":"Statistics Ontology","prefix":"STATO","publications":[{"url":"http://stato-ontology.org/"}],"version":"2025-02-23"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/stato.owl"}],"description":"STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.","extras":{"version.iri":"http://purl.obolibrary.org/obo/stato/releases/2025-02-23/stato.owl"},"homepage":"http://stato-ontology.org/","name":"STATO: the statistical methods ontology","prefix":"stato","tracker":"https://github.com/ISA-tools/stato/issues","version":"2025-02-23"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/STATO/16/stato.owl"}],"description":"STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.","homepage":"http://stato-ontology.org/","name":"The Statistical Methods Ontology","prefix":"STATO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"The Statistical Methods Ontology","prefix":"STATO"},"cheminf":null,"fairsharing":{"contact":{"email":"philippe.rocca-serra@oerc.ox.ac.uk","name":"Philippe Rocca-Serra","orcid":"0000-0001-9853-5668"},"description":"STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.","homepage":"http://stato-ontology.org/","keywords":["Omics","Statistics","data visualization","Experimental measurement","Data analysis","graph","study design"],"license":{"name":"CC-BY-3.0","url":"https://creativecommons.org/licenses/by/3.0/"},"name":"Statistics Ontology","prefix":"FAIRsharing.na5xp","repository":"https://github.com/ISA-tools/stato","short_names":["STATO"]},"biocontext":{"prefix":"STATO","uri_format":"http://purl.obolibrary.org/obo/STATO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/stato.owl"}],"contact":{"email":"stat-ontology@googlegroups.com"},"description":"STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.","extras":{"version.iri":"http://purl.obolibrary.org/obo/stato/releases/2025-02-23/stato.owl"},"homepage":"https://stato-ontology.org/","keywords":["ESS","DataPLANT"],"name":"STATO: the statistical methods ontology","prefix":"stato","tracker":"https://github.com/ISA-tools/stato/issues/"}},"stitch":{"prefix":"stitch","name":"Search Tool for Interactions of Chemicals","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Peer Bork","orcid":"0000-0002-2627-833X","email":"bork@embl.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"STITCH","miriam":"stitch","n2t":"stitch","pathguide":"313","prefixcommons":"stitch","re3data":"r3d100012165"},"synonyms":null,"keywords":null,"domain":"chemical","references":null,"publications":[{"pubmed":"24293645","doi":"10.1093/nar/gkt1207","pmc":"PMC3964996","title":"STITCH 4: integration of protein-chemical interactions with user data","year":2013},{"pubmed":"22075997","doi":"10.1093/nar/gkr1011","pmc":"PMC3245073","title":"STITCH 3: zooming in on protein-chemical interactions","year":2011},{"pubmed":"19897548","doi":"10.1093/nar/gkp937","pmc":"PMC2808890","title":"STITCH 2: an interaction network database for small molecules and proteins","year":2009},{"pubmed":"18084021","doi":"10.1093/nar/gkm795","pmc":"PMC2238848","title":"STITCH: interaction networks of chemicals and proteins","year":2007},{"pubmed":"18084021","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.","examples":["BQJCRHHNABKAKU"],"extras":{"miriam_id":"00000266","namespaceEmbeddedInLui":false},"homepage":"http://stitch.embl.de/","name":"STITCH","pattern":"^\\w{14}$","prefix":"stitch","status":"active","uri_format":"http://stitch.embl.de/interactions/$1"},"n2t":{"description":"STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.","examples":["BQJCRHHNABKAKU"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://stitch.embl.de/","name":"STITCH","pattern":"^\\w{14}$","prefix":"stitch","uri_format":"http://stitch.embl.de/interactions/$1"},"prefixcommons":{"description":"STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.","examples":["ICXJVZHDZFXYQC"],"homepage":"http://stitch.embl.de","keywords":["interaction","protein","small molecule"],"name":"STITCH: Chemical-Protein Interactions","pattern":"^\\w{14}$","prefix":"stitch","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/stitch:$1"}],"publications":[{"pubmed":"18084021"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"STITCH","uri_format":"http://identifiers.org/stitch/$1"},"edam":null,"re3data":{"description":"The Database explores the interactions of chemicals and proteins. It integrates information about interactions from metabolic pathways, crystal structures, binding experiments and drug-target relationships. Inferred information from phenotypic effects, text mining and chemical structure similarity is used to predict relations between chemicals. STITCH further allows exploring the network of chemical relations, also in the context of associated binding proteins.","homepage":"http://stitch.embl.de/","name":"STITCH","prefix":"r3d100012165","prefix_synonyms":["Search Tool for Interactions of Chemicals"],"xrefs":{"doi":"10.17616/R3606X","nif":"0000-03499"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://stitch.embl.de/","name":"Chemical-Protein Interaction Networks","prefix":"313","short_names":["STITCH"]},"tib":null},"stn":{"prefix":"stn","name":"FDA Submission Tracking Number","description":"The pre-IND tracking number for submissions to the FDA","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.fda.gov/media/128698/download","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"125768","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"storedb":{"prefix":"storedb","name":"Store DB","description":null,"pattern":"^(STUDY|FILE|DATASET)\\d+$","uri_format":"https://www.storedb.org/?$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"STUDY1040","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"STOREDB","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"STOREDB","integbio":"nbdc02191","miriam":"storedb","n2t":"storedb","re3data":"r3d100011049"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":true,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.","examples":["STOREDB:STUDY1040"],"extras":{"miriam_id":"00000577","namespaceEmbeddedInLui":false},"homepage":"https://www.storedb.org/","name":"STOREDB","pattern":"^STOREDB:(STUDY|FILE|DATASET)\\d+$","prefix":"storedb","status":"active","uri_format":"https://www.storedb.org/?$1"},"n2t":{"description":"STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.","examples":["STOREDB:STUDY1040"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://www.storedb.org/","name":"STOREDB at University of Cambridge","pattern":"^STOREDB:(STUDY|FILE|DATASET)\\d+$","prefix":"storedb","uri_format":"https://www.storedb.org/?$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"STOREDB","uri_format":"http://identifiers.org/storedb/$1"},"edam":null,"re3data":{"description":"STOREDB is a platform for the archiving and sharing of primary data and outputs of all kinds, including epidemiological and experimental data, from research on the effects of radiation. It also provides a directory of bioresources and databases containing information and materials that investigators are willing to share. STORE supports the creation of a radiation research commons.","homepage":"https://www.storedb.org/store_v3/","license":{"name":"CC"},"name":"STOREDB","prefix":"r3d100011049","prefix_synonyms":["STORE","Sustaining access to Tissues and data frOm Radiobiological Experiments"],"xrefs":{"doi":"10.17616/R3732R"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"STOREDB provides infrastructure for sharing data and resources in radiation biology and epidemiology. It is a platform for the archiving and sharing of primary data and outputs of all kinds, including epidemiological and experimental data, from research on the effects of radiation. It also provides a directory of bioresources and databases containing information and materials that investigators are willing to share. STORE supports the creation of a radiation research commons.","homepage":"https://www.storedb.org/store_v3/","keywords":["Genome/Gene","Genetic variation","Health/Disease","Organism","Expression","Method","Bibliography/Documents","Repository"],"name":"STOREDB","prefix":"nbdc02191","status":"active","xrefs":{"fairsharing":"FAIRsharing.6h8d2r"}},"pathguide":null,"tib":null},"storedb.dataset":{"prefix":"storedb.dataset","name":"StoreDB Dataset","description":"Datasets inside StoreDB at University of Cambridge","pattern":"^\\d+$","uri_format":"https://www.storedb.org/?STOREDB:DATASET$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.storedb.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1251","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"storedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"Unfortunately, the resolver itself doesn't work since datasets are actually hierarchically assigned within studies.","contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"storedb.file":{"prefix":"storedb.file","name":"StoreDB File","description":"File inside StoreDB at University of Cambridge","pattern":"^\\d+$","uri_format":"https://www.storedb.org/store_v3/download.jsp?fileId=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.storedb.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"12929","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"storedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"storedb.study":{"prefix":"storedb.study","name":"StoreDB Study","description":"Study inside StoreDB at University of Cambridge","pattern":"^\\d+$","uri_format":"https://www.storedb.org/store_v3/study.jsp?studyId=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"doi","name":"StoreDB DOI","description":"DOIs for studies","homepage":"https://www.storedb.org/","uri_format":"http://dx.doi.org/doi:10.20348/STOREDB/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://www.storedb.org/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1174","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"storedb","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"strenda":{"prefix":"strenda","name":"Standards for Reporting Enzymology Data","description":"STRENDA stands for “Standards for Reporting Enzymology Data”. For researchers it is essential to be able to compare, evaluate, interpret and reproduce experimental research results published in the literature and databases. Thus, for enzyme research, the STRENDA Commission has established standards for data reporting with the aim to improve the quality of data published in the scientific literature. [from homepage]","pattern":null,"uri_format":"https://beilstein-strenda-db.org/strenda/public/doiQuery.xhtml?doi=10.22011/strenda_db.$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.beilstein-institut.de/en/projects/strenda/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"KTRCXF","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc02138","re3data":"r3d100012329","uniprot":"DB-0278"},"synonyms":["strendadb"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.beilstein-strenda-db.org/strenda/index.xhtml","keywords":["Enzyme and pathway databases"],"name":"STRENDA database of Standards for Reporting Enzymology Data","prefix":"DB-0278","publications":[{"doi":"10.1111/febs.14427","pubmed":"29498804"}],"short_names":["STRENDA-DB"],"uri_format":"https://beilstein-strenda-db.org/strenda/public/doiQuery.xhtml?doi=10.22011/strenda_db.$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates the STRENDA Guidelines in a user-friendly, web-based system. If you are an author who is preparing a manuscript containing functional enzymology data, STRENDA DB provides you the means to ensure that your data sets are complete and valid before you submit them as part of a publication to a journal. \n Data entered in the STRENDA DB submission form are automatically checked for compliance with the STRENDA Guidelines; users receive warnings informing them when necessary information is missing.","homepage":"https://www.beilstein-strenda-db.org/strenda/","name":"STRENDA DB","prefix":"r3d100012329","prefix_synonyms":["Standards for Reporting Enzymology Data"],"xrefs":{"doi":"10.17616/R3536N"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates the STRENDA Guidelines in a user-friendly, web-based system. If you are an author who is preparing a manuscript containing functional enzymology data, STRENDA DB provides you the means to ensure that your data sets are complete and valid before you submit them as part of a publication to a journal. Data entered in the STRENDA DB submission form are automatically checked for compliance with the STRENDA Guidelines; users receive warnings informing them when necessary information is missing. A successful formal compliance is confirmed by the awarding of a STRENDA Registry Number (SRN) and documented in a fact sheet (PDF) containing all input data that can be submitted with the manuscript to the journal. In addition, each dataset is assigned a DOI that allows reference and tracking of the data. The data become publicly available in the database only after the corresponding article has been peer-reviewed and published in a journal.","homepage":"https://www.beilstein-strenda-db.org/strenda/","keywords":["Protein","Method","Bibliography/Documents"],"name":"Standards for Reporting Enzymology Data Database","prefix":"nbdc02138","short_names":["STRENDA DB"],"status":"active","xrefs":{"fairsharing":"FAIRsharing.ekj9zx"}},"pathguide":null,"tib":null},"streptomedb":{"prefix":"streptomedb","name":"StreptomeDB","description":"Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces.","pattern":"^\\d+$","uri_format":"http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://streptomedb.vm.uni-freiburg.de/streptomedb","repository":null,"contact":{"name":"Stefan Günther","orcid":"0000-0003-3744-189X","email":"stefan.guenther@pharmazie.uni-freiburg.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"15753","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39498494","doi":"10.1093/nar/gkae1030","pmc":null,"title":"StreptomeDB 4.0: a comprehensive database of streptomycetes natural products enriched with protein interactions and interactive spectral visualization","year":2024},{"pubmed":"33051671","doi":"10.1093/nar/gkaa868","pmc":"PMC7779017","title":"StreptomeDB 3.0: an updated compendium of streptomycetes natural products","year":2020},{"pubmed":"26615197","doi":"10.1093/nar/gkv1319","pmc":"PMC4702922","title":"StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes","year":2015},{"pubmed":"23193280","doi":"10.1093/nar/gks1253","pmc":"PMC3531085","title":"StreptomeDB: a resource for natural compounds isolated from Streptomyces species","year":2012}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1287,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"string":{"prefix":"string","name":"Search Tool for Retrieval of Interacting Genes/Proteins","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"uniprot","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"STRING","edam":"2302","integbio":"nbdc00690","miriam":"string","n2t":"string","pathguide":"93","prefixcommons":"string","re3data":"r3d100010604","uniprot":"DB-0141"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39558183","doi":"10.1093/nar/gkae1113","pmc":null,"title":"The STRING database in 2025: protein networks with directionality of regulation","year":2024},{"pubmed":"30476243","doi":"10.1093/nar/gky1131","pmc":"PMC6323986","title":"STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets","year":2019},{"pubmed":"27924014","doi":"10.1093/nar/gkw937","pmc":"PMC5210637","title":"The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible","year":2016},{"pubmed":"26614125","doi":"10.1093/bioinformatics/btv696","pmc":"PMC4896368","title":"SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles","year":2015},{"pubmed":"25352553","doi":"10.1093/nar/gku1003","pmc":"PMC4383874","title":"STRING v10: protein-protein interaction networks, integrated over the tree of life","year":2014},{"pubmed":"23203871","doi":"10.1093/nar/gks1094","pmc":"PMC3531103","title":"STRING v9.1: protein-protein interaction networks, with increased coverage and integration","year":2012},{"pubmed":"18940858","doi":"10.1093/nar/gkn760","pmc":"PMC2686466","title":"STRING 8--a global view on proteins and their functional interactions in 630 organisms","year":2008},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17098935","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608232","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12519996","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"10982861","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36370105","doi":"10.1093/nar/gkac1000","pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17098935","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608232","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12519996","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"10982861","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36370105","doi":"10.1093/nar/gkac1000","pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17098935","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608232","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12519996","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"10982861","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36370105","doi":"10.1093/nar/gkac1000","pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"17098935","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"15608232","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"12519996","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"10982861","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18940858","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"36370105","doi":"10.1093/nar/gkac1000","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.","examples":["P53350"],"extras":{"miriam_id":"00000265","namespaceEmbeddedInLui":false},"homepage":"http://string-db.org/","name":"STRING","pattern":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$","prefix":"string","providers":[{"code":"","description":"STRING at Heidelberg","homepage":"http://string.embl.de/","name":"STRING at Heidelberg","uri_format":"https://string.embl.de/cgi/network?identifier=$1"}],"status":"active","uri_format":"https://string-db.org/cgi/network?identifier=$1"},"n2t":{"description":"STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.","examples":["P53350"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://string-db.org/","name":"STRING Mirror at Heidelberg","pattern":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$","prefix":"string","uri_format":"http://string-db.org/interactions/$1"},"prefixcommons":{"description":"STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations","examples":["P53350"],"homepage":"http://string-db.org","keywords":["protein","interaction"],"name":"STRING: functional protein association networks","pattern":"^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$","prefix":"string","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/string:$1"}],"publications":[{"pubmed":"18940858"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://string-db.org/","keywords":["Protein-protein interaction databases"],"name":"STRING","prefix":"DB-0141","publications":[{"doi":"10.1093/nar/gkac1000","pubmed":"36370105"}],"short_names":["STRING"],"uri_format":"https://string-db.org/network/$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"STRING","uri_format":"http://identifiers.org/string/$1"},"edam":{"description":"Unique identifier of an entry from the STRING database of protein-protein interactions.","name":"STRING","prefix":"2302"},"re3data":{"description":"STRING is a database of known and predicted protein interactions.\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:\n- Genomic Context\n- High-throughput Experiments\n- (Conserved) Coexpression\n- Previous Knowledge\nSTRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.","homepage":"https://string-db.org/","name":"STRING","prefix":"r3d100010604","prefix_synonyms":["Known and Predicted Protein-Protein Interactions"],"xrefs":{"doi":"10.17616/R3VS40","nif":"0000-03503","omics":"29032"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"STRING is a database of known and predicted protein interactions, including both physical and functional interactions. It contains data which derived from four sources: genomic context, high-throughput experiments, coexpression and previous knowledge. This database quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. It performs iterative searches and visualizes the results in their genomic context. Many data including protein sequences, protein network, interaction types for protein links, orthologous groups or full database dumps (license required) are downloadable.","homepage":"http://string-db.org/","keywords":["Protein","Sequence","Interaction/Pathway","Classification"],"name":"Search Tool for the Retrieval of Interacting Genes/Proteins","prefix":"nbdc00690","publications":[{"pubmed":"18940858"},{"pubmed":"17098935"},{"pubmed":"15608232"},{"pubmed":"12519996"},{"pubmed":"10982861"}],"short_names":["STRING"],"status":"active","xrefs":{"fairsharing":"biodbcore-000340"}},"pathguide":{"homepage":"http://string-db.org","name":"Search Tool for the Retrieval of Interacting Genes/Proteins","prefix":"93","short_names":["STRING"]},"tib":null},"sty":{"prefix":"sty","name":"UMLS Semantic Types Ontology","description":"UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.","pattern":"^T\\d{3}$","uri_format":"https://uts.nlm.nih.gov/uts/umls/semantic-network/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"bioportal.purl","name":"BioPortal PURL","description":"BioPortal PURL","homepage":"http://purl.bioontology.org/ontology/STY","uri_format":"http://purl.bioontology.org/ontology/STY/$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://lhncbc.nlm.nih.gov/semanticnetwork/","repository":null,"contact":{"name":"Olivier Bodenreider","orcid":"0000-0003-4769-4217","email":"olivier@nlm.nih.gov","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"T039","example_extras":null,"example_decoys":null,"license":"https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/license_agreement.html","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://w3id.org/biopragmatics/resources/sty/sty.owl","download_obo":"https://w3id.org/biopragmatics/resources/sty/sty.obo","download_json":"https://w3id.org/biopragmatics/resources/sty/sty.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"STY","agroportal":"STY","bartoc":"21017","biolink":"STY","bioportal":"STY","ecoportal":"STY","wikidata":"P11955"},"synonyms":["UMLSSG","umls.st","umls.sty"],"keywords":null,"domain":"classification","references":null,"publications":[{"pubmed":"14681409","doi":"10.1093/nar/gkh061","pmc":"PMC308795","title":"The Unified Medical Language System (UMLS): integrating biomedical terminology","year":2004},{"pubmed":null,"doi":"10.1002/cfg.255","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":[{"name":"Tiago Lubiana","orcid":"0000-0003-2473-2313","email":"tiago.lubiana.alves@usp.br","github":"lubianat"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":"https://www.nlm.nih.gov/research/umls/knowledge_sources/semantic_network/semantic-network.png","miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"identifier for a concept in the Semantic Network vocabulary of the Unified Medical Language System","examples":["T005","T015"],"homepage":"https://uts.nlm.nih.gov/uts/umls/semantic-network/root","name":"UMLS Semantic Network ID","prefix":"P11955","uri_format":"https://uts.nlm.nih.gov/uts/umls/semantic-network/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"support@bioontology.org","name":"bioportal"},"description":"UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. This section of the documentation provides an overview of the Semantic Network, and describes the files of the Semantic Network. Sample records illustrate structure and content of these files. The Semantic Network is distributed as one of the UMLS Knowledge Sources and as an open source resource available on the Semantic Network Web site, subject to these terms and conditions.","homepage":"https://semanticnetwork.nlm.nih.gov/","name":"Semantic Types Ontology","prefix":"STY","version":"2025AB"},"ecoportal":{"contact":{"email":"gs_bouazzoun@esi.dz","name":"Syphax Bouazzouni"},"description":"The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. This section of the documentation provides an overview of the Semantic Network, and describes the files of the Semantic Network. Sample records illustrate structure and content of these files.","extras":{"example_uri":"http://purl.bioontology.org/ontology/STY/T057"},"homepage":"https://lhncbc.nlm.nih.gov/semanticnetwork/","license":{"name":"CC0-1.0"},"name":"UMLS Semantic Network","prefix":"STY","publications":[{"doi":"10.1002/cfg.255"}]},"agroportal":{"contact":{"email":"olivier@nlm.nih.gov","name":"Olivier Bodenreider"},"description":"The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. This section of the documentation provides an overview of the Semantic Network, and describes the files of the Semantic Network. Sample records illustrate structure and content of these files.","extras":{"example_uri":"http://purl.bioontology.org/ontology/STY/T057"},"homepage":"https://lhncbc.nlm.nih.gov/semanticnetwork/","license":{"name":"CC0-1.0"},"name":"UMLS Semantic Network","prefix":"STY","version":"12 (2022AA)"},"cropoct":null,"ols":null,"aberowl":{"description":"UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. This section of the documentation provides an overview of the Semantic Network, and describes the files of the Semantic Network. Sample records illustrate structure and content of these files. The Semantic Network is distributed as one of the UMLS Knowledge Sources and as an open source resource available on the Semantic Network Web site, subject to these terms and conditions.","homepage":"https://semanticnetwork.nlm.nih.gov/","name":"Semantic Types Ontology","prefix":"STY","version":"2016AB"},"ncbi":null,"uniprot":null,"biolink":{"prefix":"STY","uri_format":"http://purl.bioontology.org/ontology/STY/$1"},"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The UMLS Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types. The Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project.","homepage":"https://www.nlm.nih.gov/research/umls/knowledge_sources/semantic_network/index.html","license":{"spdx":"CC0-1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"UMLS Semantic Network","prefix":"21017","short_names":["STY"]},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"subtilist":{"prefix":"subtilist","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Antoine Danchin","orcid":"0000-0002-6350-5001","email":"antoine.danchin@normalesup.org","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SUBTILIST","miriam":"subtilist","n2t":"subtilist","ncbi":"SubtiList","prefixcommons":"subtilist"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"11752255","doi":"10.1093/nar/30.1.62","pmc":"PMC99059","title":"SubtiList: the reference database for the Bacillus subtilis genome","year":2002}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.","examples":["BG11523"],"extras":{"miriam_id":"00000433","namespaceEmbeddedInLui":false},"homepage":"http://genolist.pasteur.fr/SubtiList/","name":"SubtiList","pattern":"^BG\\d+$","prefix":"subtilist","status":"deprecated","uri_format":"http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"},"n2t":{"description":"SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.","examples":["BG11523"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://genolist.pasteur.fr/SubtiList/","name":"SubtiList at Pasteur Institute","pattern":"^BG\\d+$","prefix":"subtilist","uri_format":"http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"},"prefixcommons":{"description":"Its purpose is to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments","examples":["BG11523"],"homepage":"http://genolist.pasteur.fr/SubtiList/","keywords":["genome","DNA","protein"],"name":"Bacillus subtilis strain 168 genome database","pattern":"^BG\\d+$","prefix":"subtilist","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/subtilist:$1"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["BG10001"],"homepage":"http://genolist.pasteur.fr/SubtiList/","name":"Bacillus subtilis genome sequencing project","prefix":"SubtiList"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SUBTILIST","uri_format":"http://identifiers.org/subtilist/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"subtiwiki":{"prefix":"subtiwiki","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Jörg Stülke","orcid":"0000-0001-5881-5390","email":"jstuelk@gwdg.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SUBTIWIKI","integbio":"nbdc00693","miriam":"subtiwiki","n2t":"subtiwiki","prefixcommons":"subtiwiki"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"26433225","doi":"10.1093/nar/gkv1006","pmc":"PMC4702770","title":"SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis","year":2015},{"pubmed":"20157485","doi":"10.1093/database/bap012","pmc":"PMC2790307","title":"A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki","year":2009},{"pubmed":"19959575","doi":"10.1099/mic.0.035790-0","pmc":null,"title":"Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis","year":2009},{"pubmed":"26433225","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20157485","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"19959575","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"22096228","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"19959575","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"20157485","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.","examples":["BSU29180"],"extras":{"miriam_id":"00000132","namespaceEmbeddedInLui":false},"homepage":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page","name":"SubtiWiki","pattern":"^BSU\\d{5}$","prefix":"subtiwiki","status":"active","uri_format":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"},"n2t":{"description":"SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.","examples":["BSU29180"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page","name":"SubtiWiki website","pattern":"^BSU\\d{5}$","prefix":"subtiwiki","uri_format":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"},"prefixcommons":{"description":"SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.","examples":["BSU29180"],"homepage":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page","keywords":["gene","protein","RNA","DNA"],"name":"SubtiWiki","pattern":"^BSU\\d{5}$","prefix":"subtiwiki","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/subtiwiki:$1"}],"publications":[{"pubmed":"19959575"},{"pubmed":"20157485"}],"uri_format":"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SUBTIWIKI","uri_format":"http://identifiers.org/subtiwiki/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"SubtiWiki is a collaborative user database for the bacterium Bacillus subtilis. The database contains user annotations of genes, annotations, pathways, and interactions. Users can contribute and download several different summary information tables.","homepage":"http://subtiwiki.uni-goettingen.de/","keywords":["Genome/Gene","Protein","Metabolite","Bibliography/Documents","Method","Expression","Interaction/Pathway"],"name":"SubtiWiki","prefix":"nbdc00693","publications":[{"pubmed":"26433225"},{"pubmed":"20157485"},{"pubmed":"19959575"},{"pubmed":"22096228"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000146"}},"pathguide":null,"tib":null},"sugarbind":{"prefix":"sugarbind","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SUGARBIND","biocontext":"SUGARBIND","bioportal":"SUGARBIND","integbio":"nbdc02224","miriam":"sugarbind","n2t":"sugarbind"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.1007/978-4-431-56454-6_13","pmc":null,"title":"SugarBindDB","year":2016},{"pubmed":"26578555","doi":"10.1093/nar/gkv1247","pmc":"PMC4702881","title":"SugarBindDB, a resource of glycan-mediated host-pathogen interactions","year":2015},{"pubmed":"26578555","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"26578555","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.","examples":["lectins/172"],"extras":{"miriam_id":"00000629","namespaceEmbeddedInLui":false},"homepage":"http://sugarbind.expasy.org/","name":"SugarBind","pattern":"^[A-Za-z]+\\/[0-9]+$","prefix":"sugarbind","status":"active","uri_format":"http://sugarbind.expasy.org/$1"},"n2t":{"description":"The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.","examples":["lectins/172"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://sugarbind.expasy.org/","name":"SugarBind","pattern":"^[A-Za-z]+\\/[0-9]+$","prefix":"sugarbind","uri_format":"http://sugarbind.expasy.org/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"contact":{"email":"bdkouiti5013@gmail.com","name":"Koichi Arakawa"},"description":"Ontology for representing glycan and pathogen binding interaction data in RDF. Many of the terms are based on the data originally contained in the SugarBind database.","name":"SugarBind","prefix":"SUGARBIND","version":"2023-06-20"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SUGARBIND/1/sugarbind.owl"}],"description":"Ontology for representing glycan and pathogen binding interaction data in RDF. Many of the terms are based on the data originally contained in the SugarBind database.","name":"SugarBind","prefix":"SUGARBIND","version":"1.0.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SUGARBIND","uri_format":"http://identifiers.org/sugarbind/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"The SugarBind Database (SugarBindDB) was created in 2002 as part of an effort by the MITRE Corporation (http://www.mitre.org) to develop a pathogen-capture technology based on the binding of viral, bacterial and biotoxin lectins to specific glycans (aka, sugars, carbohydrates) displayed on glycoprotein films. The database content results from compiling publicly available information. In 2010, the 2008 version of the database was migrated from MITRE Corporation to the SIB Swiss Institute of Bioinformatics in Geneva, Switzerland. From then, substantial changes in the database design and usage were undertaken and previous content was significantly extended.","homepage":"http://sugarbind.expasy.org/","keywords":["Carbohydrate","Health/Disease","Chemical structure","Interaction/Pathway","Bibliography/Documents"],"name":"SugarBind","prefix":"nbdc02224","publications":[{"pubmed":"26578555"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.d064y6"}},"pathguide":null,"tib":null},"sulo":{"prefix":"sulo","name":"Simplified Upper Level Ontology","description":"The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph. [from homepage]","pattern":null,"uri_format":"https://w3id.org/sulo/$1","uri_format_resolvable":null,"rdf_uri_format":"https://w3id.org/sulo/$1","providers":null,"homepage":"https://aidava-dev.github.io/sulo/","repository":"https://github.com/aidava-dev/sulo","contact":{"name":"Michel Dumontier","orcid":"0000-0003-4727-9435","email":"michel.dumontier@gmail.com","github":"micheldumontier"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Capability","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://w3id.org/sulo/sulo.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"sulo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1446,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph.","homepage":"https://w3id.org/sulo/sulo/","keywords":["Health"],"name":"Simplified Upper Level Ontology","prefix":"sulo","uri_format":"https://w3id.org/sulo/$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"supfam":{"prefix":"supfam","name":"SUPERFAMILY","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Arun Prasad Pandurangan","orcid":"0000-0001-7168-7143","email":"pandura@mrc-lmb.cam.ac.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SUPFAM","miriam":"supfam","n2t":"supfam","prefixcommons":"superfamily","uniprot":"DB-0155"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"11697912","doi":"10.1006/jmbi.2001.5080","pmc":null,"title":"Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure","year":2001}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.","examples":["SSF57615"],"extras":{"miriam_id":"00000357","namespaceEmbeddedInLui":false},"homepage":"http://supfam.org/SUPERFAMILY/","name":"SUPFAM","pattern":"^\\w+$","prefix":"supfam","status":"active","uri_format":"http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"},"n2t":{"description":"SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.","examples":["SSF57615"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://supfam.org/SUPERFAMILY/","name":"SUPFAM at MRC and University of Bristol","pattern":"^\\w+$","prefix":"supfam","uri_format":"http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"},"prefixcommons":{"description":"SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes.","examples":["46556"],"homepage":"http://supfam.org","keywords":["protein","genome","structure","classification"],"name":"SUPERFAMILY database of structural and functional annotation","pattern":"^\\d+$","prefix":"superfamily","prefix_synonyms":["supfam"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/superfamily:$1"}],"uri_format":"http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://supfam.org","keywords":["Family and domain databases"],"name":"Superfamily database of structural and functional annotation","prefix":"DB-0155","publications":[{"doi":"10.1093/nar/gky1130","pubmed":"30445555"}],"short_names":["SUPFAM"],"uri_format":"https://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SUPFAM","uri_format":"http://identifiers.org/supfam/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"suprabank.additive":{"prefix":"suprabank.additive","name":"SupraBank Additive","description":"Identifiers for chemicals used as additives","pattern":null,"uri_format":"https://suprabank.org/additives/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://suprabank.org/additives","repository":null,"contact":{"name":"Stephan Sinn","orcid":"0000-0002-9676-9839","email":null,"github":"StephanSinn"},"contact_extras":null,"contact_group_email":"contact@suprabank.org","contact_page":null,"owners":null,"example":"10","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"suprabank","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","molecule"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1685,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"suprabank.buffer":{"prefix":"suprabank.buffer","name":"SupraBank Buffer","description":"Identifiers for chemicals used as buffers","pattern":"^\\d+$","uri_format":"https://suprabank.org/buffers/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://suprabank.org/buffers","repository":null,"contact":{"name":"Stephan Sinn","orcid":"0000-0002-9676-9839","email":null,"github":"StephanSinn"},"contact_extras":null,"contact_group_email":"contact@suprabank.org","contact_page":null,"owners":null,"example":"189","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"suprabank","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","molecule"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1685,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"suprabank.interaction":{"prefix":"suprabank.interaction","name":"SupraBank Interaction","description":"Interactions are SupraBank's way to collect information about experiments that describe the binding interaction between molecules. The form for creating an interaction enables you to list all experimental conditions. An interaction is similar to an entry in a table in your scientific publication, but providing machine readable comprehensive information. (from homepage)","pattern":"^\\d+$","uri_format":"https://suprabank.org/interactions/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://suprabank.org/interactions","repository":null,"contact":{"name":"Stephan Sinn","orcid":"0000-0002-9676-9839","email":null,"github":"StephanSinn"},"contact_extras":null,"contact_group_email":"contact@suprabank.org","contact_page":null,"owners":null,"example":"2329","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"suprabank","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","interaction","relationship"],"domain":"relationship","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1685,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"suprabank.molecule":{"prefix":"suprabank.molecule","name":"SupraBank Molecule","description":"Identifiers for molecules in SupraBank","pattern":"^\\d+$","uri_format":"https://suprabank.org/molecules/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://suprabank.org/molecules","repository":null,"contact":{"name":"Stephan Sinn","orcid":"0000-0002-9676-9839","email":null,"github":"StephanSinn"},"contact_extras":null,"contact_group_email":"contact@suprabank.org","contact_page":null,"owners":null,"example":"2196","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"suprabank","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","molecule"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1685,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"suprabank.solvent":{"prefix":"suprabank.solvent","name":"SupraBank Solvent","description":"Identifiers for chemicals used as solvents in SupraBank","pattern":"^\\d+$","uri_format":"https://suprabank.org/solvents/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://suprabank.org/solvents","repository":null,"contact":{"name":"Stephan Sinn","orcid":"0000-0002-9676-9839","email":null,"github":"StephanSinn"},"contact_extras":null,"contact_group_email":"contact@suprabank.org","contact_page":null,"owners":null,"example":"57","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"suprabank","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["chemical","molecule"],"domain":"chemical","references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1685,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"surechembl":{"prefix":"surechembl","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"re3data":"r3d100011037","wikidata":"P2877"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"the chemical compound identifier for the EBI SureChEMBL 'chemical compounds in patents' database","examples":["17951640","181779","298931"],"homepage":"https://www.surechembl.org/","name":"SureChEMBL ID","pattern":"^\\d+$","prefix":"P2877","uri_format":"https://www.surechembl.org/chemical/$1"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"SureChemOpen is a free resource for researchers who want to search, view and link to patent chemistry. For end-users with professional search and analysis needs, we offer the fully-featured SureChemPro. For enterprise users, SureChemDirect provides all our patent chemistry via an API or a data feed. The SureChem family of products is built upon the Claims® Global Patent Database, a comprehensive international patent collection provided by IFI Claims®. This state of the art database is normalized and curated to provide unprecedented consistency and quality.","homepage":"https://www.surechembl.org/","name":"SureChEMBL","prefix":"r3d100011037","prefix_synonyms":["Open Patent Data","SureCHEM"],"xrefs":{"doi":"10.17616/R3HK8B"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sustaingraph":{"prefix":"sustaingraph","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"6T","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"sustaingraph"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://netmode.gitlab.io/sustaingraph-ontology/ontology.ttl"}],"description":"The SustainGraph ontology is developed to track the United Nations Sustainable Development Goals(SDGs) at national and regional level, their evolution accross time and inter-connectedness with existing and emerging policies and directives at European Union (EU) and global level. It is described using W3C RDF Schema and the Web Ontology Language.","homepage":"https://netmode.gitlab.io/sustaingraph-ontology/","keywords":["Miscellaneous"],"name":"SustainGraph Ontology","prefix":"sustaingraph","uri_format":"https://netmode.gitlab.io/sustaingraph/$1"}},"swan":{"prefix":"swan","name":"Semantic Web Applications in Neuromedicine","description":"SWAN ontology consists in a collection of ontologies used to create, manage and share scientific knowledge bases.","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://code.google.com/archive/p/swan-ontology","repository":"https://github.com/pav-ontology/swan-ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":"CC-BY-3.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://rawcdn.githack.com/pav-ontology/swan-ontology/2.0.1/swan.owl","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://www.hcklab.org/swan-project.html"],"publications":[{"pubmed":"18583197","doi":"10.1016/j.jbi.2008.04.010","pmc":"PMC4536833","title":"The SWAN biomedical discourse ontology","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet":{"prefix":"sweet","name":"Semantic Web for Earth and Environment Technology Ontology","description":"The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).","pattern":null,"uri_format":"http://sweetontology.net/human/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"obo.incorrect","name":"OBO PURL (incorrect)","description":"Incorrectly encoded URL with an OBO PURL prefix","homepage":"http://purl.obolibrary.org","uri_format":"http://purl.obolibrary.org/obo/http://sweet.jpl.nasa.gov/2.3/realm.owl#$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"http://sweetontology.net/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"realmGeol/GeologicFeature","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/sources/sweetrealm.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SWEET","bartoc":"20510","bioportal":"SWEET","fairsharing":"FAIRsharing.jh4xht","tib":"sweet"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":{"description":"The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Originally developed by NASA Jet Propulsion Labs under Rob Raskin, SWEET is now officially under the governance of the ESIP foundation.","homepage":"https://github.com/ESIPFed/sweet/blob/master/README.md","name":"Semantic Web for Earth and Environment Technology Ontology","prefix":"SWEET","version":"3.6.0"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SWEET/2/sweet.owl"}],"description":"The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Originally developed by NASA Jet Propulsion Labs under Rob Raskin, SWEET is now officially under the governance of the ESIP foundation.","homepage":"https://github.com/ESIPFed/sweet/blob/master/README.md","name":"Semantic Web for Earth and Environment Technology Ontology","prefix":"SWEET","version":"3.1.0"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"The Semantic Web for Earth and Environmental Terminology is a mature foundation ontology originally developed at the NASA Jet Propulsion Laboratory. Containing over 11000 concepts organized into ~200 ontologies, its top-level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), and Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Since 2017, SWEET has been under the governance of the ESIP foundation.","homepage":"http://sweetontology.net/","keywords":["Environmental Science","Geography","Geology","Earth Science"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Semantic Web for Earth and Environmental Terminology Ontology","prefix":"FAIRsharing.jh4xht","repository":"https://github.com/ESIPFed/sweet/wiki/SWEET-IRI-Patterns-for-Ontologies-and-their-Terms","short_names":["SWEET"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":{"description":"The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). Originally developed by NASA Jet Propulsion Labs under Rob Raskin, SWEET is now officially under the governance of the ESIP foundation.","homepage":"http://sweetontology.net/sweetAll","license":{"spdx":"CC_MARK","url":"https://creativecommons.org/publicdomain/mark/1.0/"},"name":"Semantic Web for Earth and Environment Technology Ontology","prefix":"20510","short_names":["SWEET"],"uri_format":"http://sweetontology.net/sweetAll$1"},"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/ESIPFed/sweet/master/src/sweetAll.ttl"}],"description":"The Semantic Web for Earth and Environmental Terminology (SWEET) is a framework to enhance Earth science data discovery and usability by enabling software to understand the semantics of web resources. SWEET includes ontologies that define a knowledge space for Earth system science using OWL. It covers key concepts like space, time, and Earth systems, as well as scientific phenomena. SWEET is modularized into 224 files, each representing a namespace, with dependencies managed through OWL imports.","homepage":"http://sweetontology.net/sweetAll","keywords":["ESS","NFDI4ING","earth sciences"],"name":"Semantic Web for Earth and Environmental Terminology (SWEET) Ontologies.","prefix":"sweet","tracker":"https://github.com/ESIPFed/sweet/issues"}},"sweet.hu":{"prefix":"sweet.hu","name":"SWEET Ontology Human","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human","pattern":null,"uri_format":"http://sweetontology.net/human/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/human/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Behavior","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/human.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohu"],"keywords":["human"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hua":{"prefix":"sweet.hua","name":"SWEET Ontology Human Agriculture","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Agriculture","pattern":null,"uri_format":"http://sweetontology.net/humanAgriculture/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanAgriculture/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnimalProduction","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanAgriculture.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohua"],"keywords":["agriculture"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.huc":{"prefix":"sweet.huc","name":"SWEET Ontology Human Commerce","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Commerce","pattern":null,"uri_format":"http://sweetontology.net/humanCommerce/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanCommerce/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Assembly","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanCommerce.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohuc"],"keywords":["commerce"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hud":{"prefix":"sweet.hud","name":"SWEET Ontology Human Decision","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Decision","pattern":null,"uri_format":"http://sweetontology.net/humanDecision/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanDecision/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Allocation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanDecision.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohud"],"keywords":["decision"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.huea":{"prefix":"sweet.huea","name":"SWEET Ontology Human Environmental Assessment","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Assessment","pattern":null,"uri_format":"http://sweetontology.net/humanEnvirAssessment/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanEnvirAssessment/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CEMS","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanEnvirAssessment.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohuea"],"keywords":["environmental assessment"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hueccont":{"prefix":"sweet.hueccont","name":"SWEET Ontology Human Environmental Control","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Control","pattern":null,"uri_format":"http://sweetontology.net/humanEnvirControl/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanEnvirControl/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Abatement","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanEnvirControl.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohueccont"],"keywords":["environmental control"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.huecons":{"prefix":"sweet.huecons","name":"SWEET Ontology Human Environmental Conservation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Conservation","pattern":null,"uri_format":"http://sweetontology.net/humanEnvirConservation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanEnvirConservation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Conservation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanEnvirConservation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohuecons"],"keywords":["environmental conservation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hues":{"prefix":"sweet.hues","name":"SWEET Ontology Human Environmental Standards","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Environmental Standards","pattern":null,"uri_format":"http://sweetontology.net/humanEnvirStandards/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanEnvirStandards/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AAQS","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanEnvirStandards.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohues"],"keywords":["environmental standards"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.huj":{"prefix":"sweet.huj","name":"SWEET Ontology Human Jurisdiction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Jurisdiction","pattern":null,"uri_format":"http://sweetontology.net/humanJurisdiction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanJurisdiction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AdministrativeRegion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanJurisdiction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohuj"],"keywords":["jurisdiction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hukd":{"prefix":"sweet.hukd","name":"SWEET Ontology Human Knowledge Domain","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Knowledge Domain","pattern":null,"uri_format":"http://sweetontology.net/humanKnowledgeDomain/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanKnowledgeDomain/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anatomy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanKnowledgeDomain.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohukd"],"keywords":["knowledge domain"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hur":{"prefix":"sweet.hur","name":"SWEET Ontology Human Research","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Research","pattern":null,"uri_format":"http://sweetontology.net/humanResearch/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanResearch/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Analysis","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanResearch.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohur"],"keywords":["research"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hut":{"prefix":"sweet.hut","name":"SWEET Ontology Human Transportation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Transportation","pattern":null,"uri_format":"http://sweetontology.net/humanTransportation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanTransportation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirTraffic","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanTransportation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohut"],"keywords":["transportation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.hutr":{"prefix":"sweet.hutr","name":"SWEET Ontology Human Technology Readiness","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Human Technology Readiness","pattern":null,"uri_format":"http://sweetontology.net/humanTechReadiness/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/humanTechReadiness/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"TRL","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/humanTechReadiness.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sohutr"],"keywords":["technology readiness"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.ma":{"prefix":"sweet.ma","name":"SWEET Ontology Materials","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Materials","pattern":null,"uri_format":"http://sweetontology.net/matr/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matr/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Air","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matr.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soma"],"keywords":["materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maae":{"prefix":"sweet.maae","name":"SWEET Ontology Material Aerosol","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Aerosol","pattern":null,"uri_format":"http://sweetontology.net/matrAerosol/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrAerosol/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aerosol","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrAerosol.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaae"],"keywords":["aerosol","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mab":{"prefix":"sweet.mab","name":"SWEET Ontology Material Biomass","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Biomass","pattern":null,"uri_format":"http://sweetontology.net/matrBiomass/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrBiomass/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnimalWaste","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrBiomass.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somab"],"keywords":["biomass","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mac":{"prefix":"sweet.mac","name":"SWEET Ontology Material Compound","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Compound","pattern":null,"uri_format":"http://sweetontology.net/matrCompound/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrCompound/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ChemicalCompound","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrCompound.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somac"],"keywords":["compound","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mael":{"prefix":"sweet.mael","name":"SWEET Ontology Material Element","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Element","pattern":null,"uri_format":"http://sweetontology.net/matrElement/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrElement/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Actinoid","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrElement.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somael"],"keywords":["element","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maem":{"prefix":"sweet.maem","name":"SWEET Ontology Material Elemental Molecule","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Elemental Molecule","pattern":null,"uri_format":"http://sweetontology.net/matrElementalMolecule/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrElementalMolecule/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Allotrope","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrElementalMolecule.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaem"],"keywords":["elemental molecule","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maen":{"prefix":"sweet.maen","name":"SWEET Ontology Material Energy","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Energy","pattern":null,"uri_format":"http://sweetontology.net/matrEnergy/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrEnergy/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Battery","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrEnergy.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaen"],"keywords":["energy","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maeq":{"prefix":"sweet.maeq","name":"SWEET Ontology Material Equipment","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Equipment","pattern":null,"uri_format":"http://sweetontology.net/matrEquipment/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrEquipment/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aircraft","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrEquipment.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaeq"],"keywords":["equipment","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maf":{"prefix":"sweet.maf","name":"SWEET Ontology Material Facility","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Facility","pattern":null,"uri_format":"http://sweetontology.net/matrFacility/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrFacility/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AgriculturalProductionFacility","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrFacility.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaf"],"keywords":["facility","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maind":{"prefix":"sweet.maind","name":"SWEET Ontology Material Industrial","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Industrial","pattern":null,"uri_format":"http://sweetontology.net/matrIndustrial/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrIndustrial/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Alloy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrIndustrial.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaind"],"keywords":["industrial","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mains":{"prefix":"sweet.mains","name":"SWEET Ontology Material Instrument","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Instrument","pattern":null,"uri_format":"http://sweetontology.net/matrInstrument/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrInstrument/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anemometer","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrInstrument.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somains"],"keywords":["instrument","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maio":{"prefix":"sweet.maio","name":"SWEET Ontology Material Ion","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Ion","pattern":null,"uri_format":"http://sweetontology.net/matrIon/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrIon/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrIon.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaio"],"keywords":["ion","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mais":{"prefix":"sweet.mais","name":"SWEET Ontology Material Isotope","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Isotope","pattern":null,"uri_format":"http://sweetontology.net/matrIsotope/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrIsotope/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AlphaParticle","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrIsotope.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somais"],"keywords":["isotope","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mamic":{"prefix":"sweet.mamic","name":"SWEET Ontology Material Microbiota","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Microbiota","pattern":null,"uri_format":"http://sweetontology.net/matrMicrobiota/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrMicrobiota/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Algae","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrMicrobiota.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somamic"],"keywords":["materials","microbiota"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mamin":{"prefix":"sweet.mamin","name":"SWEET Ontology Material Mineral","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Mineral","pattern":null,"uri_format":"http://sweetontology.net/matrMineral/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrMineral/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Calcite","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrMineral.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somamin"],"keywords":["materials","mineral"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.man":{"prefix":"sweet.man","name":"SWEET Ontology Material Animal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Animal","pattern":null,"uri_format":"http://sweetontology.net/matrAnimal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrAnimal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AcornWorm","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrAnimal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soman"],"keywords":["animal","materials"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.manr":{"prefix":"sweet.manr","name":"SWEET Ontology Material Natural Resource","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Natural Resource","pattern":null,"uri_format":"http://sweetontology.net/matrNaturalResource/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrNaturalResource/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anthracite","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrNaturalResource.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somanr"],"keywords":["materials","natural resource"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maoc":{"prefix":"sweet.maoc","name":"SWEET Ontology Material Organic Compound","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Organic Compound","pattern":null,"uri_format":"http://sweetontology.net/matrOrganicCompound/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrOrganicCompound/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Alkane","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrOrganicCompound.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaoc"],"keywords":["materials","organic compound"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mapa":{"prefix":"sweet.mapa","name":"SWEET Ontology Material Particle","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Particle","pattern":null,"uri_format":"http://sweetontology.net/matrParticle/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrParticle/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnomalousEnergeticParticle","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrParticle.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somapa"],"keywords":["materials","particle"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mapl":{"prefix":"sweet.mapl","name":"SWEET Ontology Material Plant","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Plant","pattern":null,"uri_format":"http://sweetontology.net/matrPlant/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrPlant/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Branch","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrPlant.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somapl"],"keywords":["materials","plant"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.marock":{"prefix":"sweet.marock","name":"SWEET Ontology Material Rock","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock","pattern":null,"uri_format":"http://sweetontology.net/matrRock/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrRock/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Breccia","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrRock.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somarock"],"keywords":["materials","rock"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.marocki":{"prefix":"sweet.marocki","name":"SWEET Ontology Material Rock Igneous","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Rock Igneous","pattern":null,"uri_format":"http://sweetontology.net/matrRockIgneous/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrRockIgneous/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aa","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrRockIgneous.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somarocki"],"keywords":["materials","rock igneous"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.mas":{"prefix":"sweet.mas","name":"SWEET Ontology Material Sediment","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Sediment","pattern":null,"uri_format":"http://sweetontology.net/matrSediment/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrSediment/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Alluvium","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrSediment.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somas"],"keywords":["materials","sediment"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.maw":{"prefix":"sweet.maw","name":"SWEET Ontology Material Water","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Material Water","pattern":null,"uri_format":"http://sweetontology.net/matrWater/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/matrWater/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BlackWater","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/matrWater.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["somaw"],"keywords":["materials","water"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.ph":{"prefix":"sweet.ph","name":"SWEET Ontology Phenomena","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena","pattern":null,"uri_format":"http://sweetontology.net/phen/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phen/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirSeaExchange","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phen.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soph"],"keywords":["phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmo":{"prefix":"sweet.phatmo","name":"SWEET Ontology Phenomena Atmosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere","pattern":null,"uri_format":"http://sweetontology.net/phenAtmo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmo/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirMass","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmo.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmo"],"keywords":["atmosphere","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmoc":{"prefix":"sweet.phatmoc","name":"SWEET Ontology Phenomena Atmosphere Cloud","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Cloud","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoCloud/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoCloud/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Altostratus","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoCloud.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmoc"],"keywords":["atmosphere cloud","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmofo":{"prefix":"sweet.phatmofo","name":"SWEET Ontology Phenomena Atmosphere Fog","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Fog","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoFog/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoFog/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AdvectionFog","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoFog.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmofo"],"keywords":["atmosphere fog","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmofr":{"prefix":"sweet.phatmofr","name":"SWEET Ontology Phenomena Atmosphere Front","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Front","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoFront/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoFront/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ColdFront","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoFront.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmofr"],"keywords":["atmosphere front","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmol":{"prefix":"sweet.phatmol","name":"SWEET Ontology Phenomena Atmosphere Lightning","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Lightning","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoLightning/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoLightning/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BallLightning","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoLightning.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmol"],"keywords":["atmosphere lightning","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmopc":{"prefix":"sweet.phatmopc","name":"SWEET Ontology Phenomena Atmosphere Precipitation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Precipitation","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoPrecipitation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoPrecipitation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AtmosphericPrecipitation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoPrecipitation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmopc"],"keywords":["atmosphere precipitation","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmops":{"prefix":"sweet.phatmops","name":"SWEET Ontology Phenomena Atmosphere Pressure","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Pressure","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoPressure/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoPressure/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AtmosphericAnticyclone","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoPressure.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmops"],"keywords":["atmosphere pressure","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmos":{"prefix":"sweet.phatmos","name":"SWEET Ontology Phenomena Atmosphere Sky","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Sky","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoSky/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoSky/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirPollution","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoSky.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmos"],"keywords":["atmosphere sky","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmot":{"prefix":"sweet.phatmot","name":"SWEET Ontology Phenomena Atmosphere Transport","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Transport","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoTransport/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoTransport/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AcidFog","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoTransport.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmot"],"keywords":["atmosphere transport","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmow":{"prefix":"sweet.phatmow","name":"SWEET Ontology Phenomena Atmosphere Wind","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoWind/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoWind/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AgeostrophicWind","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoWind.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmow"],"keywords":["atmosphere wind","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phatmowm":{"prefix":"sweet.phatmowm","name":"SWEET Ontology Phenomena Atmosphere Wind Mesoscale","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Atmosphere Wind Mesoscale","pattern":null,"uri_format":"http://sweetontology.net/phenAtmoWindMesoscale/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenAtmoWindMesoscale/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnabaticWind","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenAtmoWindMesoscale.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophatmowm"],"keywords":["atmosphere wind mesoscale","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phb":{"prefix":"sweet.phb","name":"SWEET Ontology Phenomena Biology","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Biology","pattern":null,"uri_format":"http://sweetontology.net/phenBiol/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenBiol/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Assimilation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenBiol.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophb"],"keywords":["biology","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phcm":{"prefix":"sweet.phcm","name":"SWEET Ontology Phenomena Cycle Material","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle Material","pattern":null,"uri_format":"http://sweetontology.net/phenCycleMaterial/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenCycleMaterial/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BiogeochemicalCycle","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenCycleMaterial.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophcm"],"keywords":["cycle material","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phcr":{"prefix":"sweet.phcr","name":"SWEET Ontology Phenomena Cryosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cryosphere","pattern":null,"uri_format":"http://sweetontology.net/phenCryo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenCryo/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accumulation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenCryo.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophcr"],"keywords":["cryosphere","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phcy":{"prefix":"sweet.phcy","name":"SWEET Ontology Phenomena Cycle","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Cycle","pattern":null,"uri_format":"http://sweetontology.net/phenCycle/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenCycle/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnnualCycle","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenCycle.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophcy"],"keywords":["cycle","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phec":{"prefix":"sweet.phec","name":"SWEET Ontology Phenomena Ecology","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ecology","pattern":null,"uri_format":"http://sweetontology.net/phenEcology/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenEcology/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Adaptation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenEcology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophec"],"keywords":["ecology","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phei":{"prefix":"sweet.phei","name":"SWEET Ontology Phenomena Environmental Impact","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Environmental Impact","pattern":null,"uri_format":"http://sweetontology.net/phenEnvirImpact/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenEnvirImpact/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirPollution","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenEnvirImpact.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophei"],"keywords":["environmental impact","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phel":{"prefix":"sweet.phel","name":"SWEET Ontology Phenomena ElectroMagnetic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena ElectroMagnetic","pattern":null,"uri_format":"http://sweetontology.net/phenElecMag/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenElecMag/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CurrentSheet","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenElecMag.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophel"],"keywords":["electromagnetic","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phen":{"prefix":"sweet.phen","name":"SWEET Ontology Phenomena Energy","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Energy","pattern":null,"uri_format":"http://sweetontology.net/phenEnergy/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenEnergy/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActiveSolarEnergy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenEnergy.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophen"],"keywords":["energy","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phfd":{"prefix":"sweet.phfd","name":"SWEET Ontology Phenomena Fluid Dynamics","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Dynamics","pattern":null,"uri_format":"http://sweetontology.net/phenFluidDynamics/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenFluidDynamics/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anticyclone","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenFluidDynamics.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophfd"],"keywords":["fluid dynamics","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phfi":{"prefix":"sweet.phfi","name":"SWEET Ontology Phenomena Fluid Instability","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Instability","pattern":null,"uri_format":"http://sweetontology.net/phenFluidInstability/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenFluidInstability/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbsoluteInstability","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenFluidInstability.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophfi"],"keywords":["fluid instability","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phft":{"prefix":"sweet.phft","name":"SWEET Ontology Phenomena Fluid Transport","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Fluid Transport","pattern":null,"uri_format":"http://sweetontology.net/phenFluidTransport/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenFluidTransport/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Advection","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenFluidTransport.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophft"],"keywords":["fluid transport","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phg":{"prefix":"sweet.phg","name":"SWEET Ontology Phenomena Geologic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic","pattern":null,"uri_format":"http://sweetontology.net/phenGeol/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeol/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CompositeProcess","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeol.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophg"],"keywords":["geologic","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phgf":{"prefix":"sweet.phgf","name":"SWEET Ontology Phenomena Geologic Fault","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Fault","pattern":null,"uri_format":"http://sweetontology.net/phenGeolFault/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeolFault/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Detachment","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeolFault.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophgf"],"keywords":["geologic fault","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phgg":{"prefix":"sweet.phgg","name":"SWEET Ontology Phenomena Geologic Geomorphology","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Geomorphology","pattern":null,"uri_format":"http://sweetontology.net/phenGeolGeomorphology/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeolGeomorphology/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Abrasion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeolGeomorphology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophgg"],"keywords":["geologic geomorphology","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phgs":{"prefix":"sweet.phgs","name":"SWEET Ontology Phenomena Geologic Seismicity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Seismicity","pattern":null,"uri_format":"http://sweetontology.net/phenGeolSeismicity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeolSeismicity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aftershock","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeolSeismicity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophgs"],"keywords":["geologic seismicity","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phgt":{"prefix":"sweet.phgt","name":"SWEET Ontology Phenomena Geologic Tectonic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Tectonic","pattern":null,"uri_format":"http://sweetontology.net/phenGeolTectonic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeolTectonic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AsymmetricHeatFlow","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeolTectonic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophgt"],"keywords":["geologic tectonic","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phgv":{"prefix":"sweet.phgv","name":"SWEET Ontology Phenomena Geologic Volcano","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Geologic Volcano","pattern":null,"uri_format":"http://sweetontology.net/phenGeolVolcano/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenGeolVolcano/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"EruptionCloud","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenGeolVolcano.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophgv"],"keywords":["geologic volcano","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phhe":{"prefix":"sweet.phhe","name":"SWEET Ontology Phenomena Heliosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Heliosphere","pattern":null,"uri_format":"http://sweetontology.net/phenHelio/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenHelio/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Airglow","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenHelio.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophhe"],"keywords":["heliosphere","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phhy":{"prefix":"sweet.phhy","name":"SWEET Ontology Phenomena Hydrosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Hydrosphere","pattern":null,"uri_format":"http://sweetontology.net/phenHydro/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenHydro/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BaseFlow","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenHydro.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophhy"],"keywords":["hydrosphere","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phm":{"prefix":"sweet.phm","name":"SWEET Ontology Phenomena Mixing","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Mixing","pattern":null,"uri_format":"http://sweetontology.net/phenMixing/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenMixing/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aeration","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenMixing.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophm"],"keywords":["mixing","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.pho":{"prefix":"sweet.pho","name":"SWEET Ontology Phenomena Ocean","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean","pattern":null,"uri_format":"http://sweetontology.net/phenOcean/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenOcean/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"OceanPhenomena","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenOcean.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopho"],"keywords":["ocean","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phoc":{"prefix":"sweet.phoc","name":"SWEET Ontology Phenomena Ocean Coastal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Coastal","pattern":null,"uri_format":"http://sweetontology.net/phenOceanCoastal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenOceanCoastal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Attrition","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenOceanCoastal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophoc"],"keywords":["ocean coastal","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phod":{"prefix":"sweet.phod","name":"SWEET Ontology Phenomena Ocean Dynamics","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Ocean Dynamics","pattern":null,"uri_format":"http://sweetontology.net/phenOceanDynamics/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenOceanDynamics/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BoundaryCurrent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenOceanDynamics.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophod"],"keywords":["ocean dynamics","phenomena"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phpc":{"prefix":"sweet.phpc","name":"SWEET Ontology Phenomena Planetary Climate","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Planetary Climate","pattern":null,"uri_format":"http://sweetontology.net/phenPlanetClimate/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenPlanetClimate/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Climate","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenPlanetClimate.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophpc"],"keywords":["phenomena","planetary climate"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phr":{"prefix":"sweet.phr","name":"SWEET Ontology Phenomena Reaction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Reaction","pattern":null,"uri_format":"http://sweetontology.net/phenReaction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenReaction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Activation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenReaction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophr"],"keywords":["phenomena","reaction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phso":{"prefix":"sweet.phso","name":"SWEET Ontology Phenomena Solid","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Solid","pattern":null,"uri_format":"http://sweetontology.net/phenSolid/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenSolid/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Ablation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenSolid.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophso"],"keywords":["phenomena","solid"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phst":{"prefix":"sweet.phst","name":"SWEET Ontology Phenomena Star","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Star","pattern":null,"uri_format":"http://sweetontology.net/phenStar/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenStar/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Asteroseismology","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenStar.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophst"],"keywords":["phenomena","star"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phsy":{"prefix":"sweet.phsy","name":"SWEET Ontology Phenomena System","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System","pattern":null,"uri_format":"http://sweetontology.net/phenSystem/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenSystem/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accumulation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenSystem.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophsy"],"keywords":["phenomena","system"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phsyc":{"prefix":"sweet.phsyc","name":"SWEET Ontology Phenomena System Complexity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena System Complexity","pattern":null,"uri_format":"http://sweetontology.net/phenSystemComplexity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenSystemComplexity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Cascade","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenSystemComplexity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophsyc"],"keywords":["phenomena","system complexity"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phw":{"prefix":"sweet.phw","name":"SWEET Ontology Phenomena Wave","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave","pattern":null,"uri_format":"http://sweetontology.net/phenWave/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenWave/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Acoustic","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenWave.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophw"],"keywords":["phenomena","wave"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.phwn":{"prefix":"sweet.phwn","name":"SWEET Ontology Phenomena Wave Noise","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Phenomena Wave Noise","pattern":null,"uri_format":"http://sweetontology.net/phenWaveNoise/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/phenWaveNoise/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AmbientNoise","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/phenWaveNoise.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sophwn"],"keywords":["phenomena","wave noise"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.proc":{"prefix":"sweet.proc","name":"SWEET Ontology Process","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process","pattern":null,"uri_format":"http://sweetontology.net/proc/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/proc/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Force","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/proc.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soproc"],"keywords":["process"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.procc":{"prefix":"sweet.procc","name":"SWEET Ontology Process Chemical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Chemical","pattern":null,"uri_format":"http://sweetontology.net/procChemical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/procChemical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Absorption","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/procChemical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprocc"],"keywords":["chemical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.procp":{"prefix":"sweet.procp","name":"SWEET Ontology Process Physical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Physical","pattern":null,"uri_format":"http://sweetontology.net/procPhysical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/procPhysical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Abrasion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/procPhysical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprocp"],"keywords":["physical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.procsc":{"prefix":"sweet.procsc","name":"SWEET Ontology Process State Change","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process State Change","pattern":null,"uri_format":"http://sweetontology.net/procStateChange/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/procStateChange/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Boiling","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/procStateChange.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprocsc"],"keywords":["state change"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.procw":{"prefix":"sweet.procw","name":"SWEET Ontology Process Wave","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Process Wave","pattern":null,"uri_format":"http://sweetontology.net/procWave/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/procWave/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Absorption","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/procWave.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprocw"],"keywords":["wave"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.prop":{"prefix":"sweet.prop","name":"SWEET Ontology Property","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property","pattern":null,"uri_format":"http://sweetontology.net/prop/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/prop/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accuracy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/prop.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprop"],"keywords":["property"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propb":{"prefix":"sweet.propb","name":"SWEET Ontology Property Binary","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Binary","pattern":null,"uri_format":"http://sweetontology.net/propBinary/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propBinary/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BinaryProperty","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propBinary.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropb"],"keywords":["binary"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propcap":{"prefix":"sweet.propcap","name":"SWEET Ontology Property Capacity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Capacity","pattern":null,"uri_format":"http://sweetontology.net/propCapacity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propCapacity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Capacity","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propCapacity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropcap"],"keywords":["capacity"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propcat":{"prefix":"sweet.propcat","name":"SWEET Ontology Property Categorical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Categorical","pattern":null,"uri_format":"http://sweetontology.net/propCategorical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propCategorical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CategoricalProperty","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propCategorical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropcat"],"keywords":["categorical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propcha":{"prefix":"sweet.propcha","name":"SWEET Ontology Property Charge","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Charge","pattern":null,"uri_format":"http://sweetontology.net/propCharge/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propCharge/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Capacitance","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propCharge.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropcha"],"keywords":["charge"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propche":{"prefix":"sweet.propche","name":"SWEET Ontology Property Chemical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Chemical","pattern":null,"uri_format":"http://sweetontology.net/propChemical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propChemical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Abundance","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propChemical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropche"],"keywords":["chemical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propcon":{"prefix":"sweet.propcon","name":"SWEET Ontology Property Conductivity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Conductivity","pattern":null,"uri_format":"http://sweetontology.net/propConductivity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propConductivity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Conductance","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propConductivity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropcon"],"keywords":["conductivity"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propcou":{"prefix":"sweet.propcou","name":"SWEET Ontology Property Count","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Count","pattern":null,"uri_format":"http://sweetontology.net/propCount/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propCount/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AtomicNeutralNumberDensity","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propCount.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropcou"],"keywords":["count"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propdife":{"prefix":"sweet.propdife","name":"SWEET Ontology Property Difference","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Difference","pattern":null,"uri_format":"http://sweetontology.net/propDifference/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propDifference/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Amplitude","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propDifference.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropdife"],"keywords":["difference"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propdifu":{"prefix":"sweet.propdifu","name":"SWEET Ontology Property Diffusivity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Diffusivity","pattern":null,"uri_format":"http://sweetontology.net/propDiffusivity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propDiffusivity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Confluence","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propDiffusivity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropdifu"],"keywords":["diffusivity"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propdr":{"prefix":"sweet.propdr","name":"SWEET Ontology Property Dimensionless Ratio","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Dimensionless Ratio","pattern":null,"uri_format":"http://sweetontology.net/propDimensionlessRatio/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propDimensionlessRatio/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BowenRatio","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propDimensionlessRatio.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropdr"],"keywords":["dimensionless ratio"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.prope":{"prefix":"sweet.prope","name":"SWEET Ontology Property Energy","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy","pattern":null,"uri_format":"http://sweetontology.net/propEnergy/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propEnergy/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AvailablePotentialEnergy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propEnergy.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprope"],"keywords":["energy"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propef":{"prefix":"sweet.propef","name":"SWEET Ontology Property Energy Flux","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Energy Flux","pattern":null,"uri_format":"http://sweetontology.net/propEnergyFlux/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propEnergyFlux/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbsorbedSolarRadiation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propEnergyFlux.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropef"],"keywords":["energy flux"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propfr":{"prefix":"sweet.propfr","name":"SWEET Ontology Property Fraction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Fraction","pattern":null,"uri_format":"http://sweetontology.net/propFraction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propFraction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Absorptance","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propFraction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropfr"],"keywords":["fraction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propfu":{"prefix":"sweet.propfu","name":"SWEET Ontology Property Function","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Function","pattern":null,"uri_format":"http://sweetontology.net/propFunction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propFunction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnnualAverage","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propFunction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropfu"],"keywords":["function"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propi":{"prefix":"sweet.propi","name":"SWEET Ontology Property Index","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Index","pattern":null,"uri_format":"http://sweetontology.net/propIndex/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propIndex/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AdaptiveCapacity","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propIndex.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropi"],"keywords":["index"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propm":{"prefix":"sweet.propm","name":"SWEET Ontology Property Mass","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass","pattern":null,"uri_format":"http://sweetontology.net/propMass/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propMass/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BulkDensity","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propMass.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropm"],"keywords":["mass"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propmf":{"prefix":"sweet.propmf","name":"SWEET Ontology Property Mass Flux","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Mass Flux","pattern":null,"uri_format":"http://sweetontology.net/propMassFlux/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propMassFlux/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"DarcyFlux","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propMassFlux.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropmf"],"keywords":["mass flux"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propo":{"prefix":"sweet.propo","name":"SWEET Ontology Property Ordinal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Ordinal","pattern":null,"uri_format":"http://sweetontology.net/propOrdinal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propOrdinal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActivityLevel","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propOrdinal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropo"],"keywords":["ordinal"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propp":{"prefix":"sweet.propp","name":"SWEET Ontology Property Pressure","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Pressure","pattern":null,"uri_format":"http://sweetontology.net/propPressure/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propPressure/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirPressure","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propPressure.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropp"],"keywords":["pressure"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propq":{"prefix":"sweet.propq","name":"SWEET Ontology Property Quantity","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Quantity","pattern":null,"uri_format":"http://sweetontology.net/propQuantity/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propQuantity/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BalanceEquation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propQuantity.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropq"],"keywords":["quantity"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propr":{"prefix":"sweet.propr","name":"SWEET Ontology Property Rotation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Rotation","pattern":null,"uri_format":"http://sweetontology.net/propRotation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propRotation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbsoluteVorticity","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propRotation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropr"],"keywords":["rotation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.props":{"prefix":"sweet.props","name":"SWEET Ontology Property Space","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space","pattern":null,"uri_format":"http://sweetontology.net/propSpace/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpace/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AngularDistribution","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpace.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soprops"],"keywords":["space"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsdir":{"prefix":"sweet.propsdir","name":"SWEET Ontology Property Space Direction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Direction","pattern":null,"uri_format":"http://sweetontology.net/propSpaceDirection/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceDirection/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Angle","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceDirection.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsdir"],"keywords":["space direction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsdis":{"prefix":"sweet.propsdis","name":"SWEET Ontology Property Space Distance","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Distance","pattern":null,"uri_format":"http://sweetontology.net/propSpaceDistance/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceDistance/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AttenuationCoefficient","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceDistance.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsdis"],"keywords":["space distance"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsh":{"prefix":"sweet.propsh","name":"SWEET Ontology Property Space Height","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Height","pattern":null,"uri_format":"http://sweetontology.net/propSpaceHeight/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceHeight/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Altitude","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceHeight.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsh"],"keywords":["space height"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsl":{"prefix":"sweet.propsl","name":"SWEET Ontology Property Space Location","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Location","pattern":null,"uri_format":"http://sweetontology.net/propSpaceLocation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceLocation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Center","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceLocation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsl"],"keywords":["space location"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsm":{"prefix":"sweet.propsm","name":"SWEET Ontology Property Space Multidimensional","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Multidimensional","pattern":null,"uri_format":"http://sweetontology.net/propSpaceMultidimensional/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceMultidimensional/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AngularExtent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceMultidimensional.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsm"],"keywords":["space multidimensional"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propsp":{"prefix":"sweet.propsp","name":"SWEET Ontology Property Speed","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Speed","pattern":null,"uri_format":"http://sweetontology.net/propSpeed/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpeed/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Acceleration","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpeed.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropsp"],"keywords":["speed"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propst":{"prefix":"sweet.propst","name":"SWEET Ontology Property Space Thickness","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Space Thickness","pattern":null,"uri_format":"http://sweetontology.net/propSpaceThickness/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propSpaceThickness/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AverageAnnualPrecipitation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propSpaceThickness.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropst"],"keywords":["space thickness"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propt":{"prefix":"sweet.propt","name":"SWEET Ontology Property Temperature","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature","pattern":null,"uri_format":"http://sweetontology.net/propTemperature/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propTemperature/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AntennaTemperature","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propTemperature.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropt"],"keywords":["temperature"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.proptf":{"prefix":"sweet.proptf","name":"SWEET Ontology Property Time Frequency","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time Frequency","pattern":null,"uri_format":"http://sweetontology.net/propTimeFrequency/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propTimeFrequency/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Bandwidth","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propTimeFrequency.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soproptf"],"keywords":["time frequency"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.proptg":{"prefix":"sweet.proptg","name":"SWEET Ontology Property Temperature Gradient","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Temperature Gradient","pattern":null,"uri_format":"http://sweetontology.net/propTemperatureGradient/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propTemperatureGradient/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AutoConvectiveLapseRate","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propTemperatureGradient.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soproptg"],"keywords":["temperature gradient"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.propti":{"prefix":"sweet.propti","name":"SWEET Ontology Property Time","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Property Time","pattern":null,"uri_format":"http://sweetontology.net/propTime/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/propTime/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Age","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/propTime.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sopropti"],"keywords":["time"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.rea":{"prefix":"sweet.rea","name":"SWEET Ontology Realm","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm","pattern":null,"uri_format":"http://sweetontology.net/realm/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realm/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Atmosphere","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realm.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["SWEETRealm","sorea"],"keywords":["realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaa":{"prefix":"sweet.reaa","name":"SWEET Ontology Realm Atmospheric","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric","pattern":null,"uri_format":"http://sweetontology.net/realmAtmo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAtmo/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AtmosphereLayer","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAtmo.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaa"],"keywords":["atmospheric","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaab":{"prefix":"sweet.reaab","name":"SWEET Ontology Realm Astrophysical Body","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Body","pattern":null,"uri_format":"http://sweetontology.net/realmAstroBody/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAstroBody/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Asteroid","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAstroBody.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaab"],"keywords":["astrophysical body","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaabl":{"prefix":"sweet.reaabl","name":"SWEET Ontology Realm Atmospheric Boundary Layer","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Boundary Layer","pattern":null,"uri_format":"http://sweetontology.net/realmAtmoBoundaryLayer/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAtmoBoundaryLayer/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AtmosphericBoundaryLayer","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAtmoBoundaryLayer.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaabl"],"keywords":["atmospheric boundary layer","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaah":{"prefix":"sweet.reaah","name":"SWEET Ontology Realm Astrophysical Heliosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical Heliosphere","pattern":null,"uri_format":"http://sweetontology.net/realmAstroHelio/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAstroHelio/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"DLayer","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAstroHelio.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaah"],"keywords":["astrophysical heliosphere","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaas":{"prefix":"sweet.reaas","name":"SWEET Ontology Realm Astrophysical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Astrophysical","pattern":null,"uri_format":"http://sweetontology.net/realmAstroStar/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAstroStar/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActiveRegion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAstroStar.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaas"],"keywords":["astrophysical","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaaw":{"prefix":"sweet.reaaw","name":"SWEET Ontology Realm Atmospheric Weather","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Atmospheric Weather","pattern":null,"uri_format":"http://sweetontology.net/realmAtmoWeather/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmAtmoWeather/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AdiabaticCondensationLevel","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmAtmoWeather.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaaw"],"keywords":["atmospheric weather","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reabb":{"prefix":"sweet.reabb","name":"SWEET Ontology Realm Biologic Biome","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Biologic Biome","pattern":null,"uri_format":"http://sweetontology.net/realmBiolBiome/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmBiolBiome/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Anthromes","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmBiolBiome.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreabb"],"keywords":["biologic biome","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reac":{"prefix":"sweet.reac","name":"SWEET Ontology Realm Cryosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Cryosphere","pattern":null,"uri_format":"http://sweetontology.net/realmCryo/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmCryo/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AblationZone","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmCryo.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreac"],"keywords":["cryosphere","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reacz":{"prefix":"sweet.reacz","name":"SWEET Ontology Realm Climate Zone","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Climate Zone","pattern":null,"uri_format":"http://sweetontology.net/realmClimateZone/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmClimateZone/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"A","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmClimateZone.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreacz"],"keywords":["climate zone","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaer":{"prefix":"sweet.reaer","name":"SWEET Ontology Realm Earth Reference","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Earth Reference","pattern":null,"uri_format":"http://sweetontology.net/realmEarthReference/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmEarthReference/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbyssopelagicZone","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmEarthReference.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaer"],"keywords":["earth reference","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reag":{"prefix":"sweet.reag","name":"SWEET Ontology Realm Geologic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic","pattern":null,"uri_format":"http://sweetontology.net/realmGeol/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeol/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Asthenosphere","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeol.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreag"],"keywords":["geologic","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reagb":{"prefix":"sweet.reagb","name":"SWEET Ontology Realm Geologic Basin","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Basin","pattern":null,"uri_format":"http://sweetontology.net/realmGeolBasin/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeolBasin/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BackArcBasin","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeolBasin.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreagb"],"keywords":["geologic basin","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reagcons":{"prefix":"sweet.reagcons","name":"SWEET Ontology Realm Geologic Constituent","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Constituent","pattern":null,"uri_format":"http://sweetontology.net/realmGeolConstituent/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeolConstituent/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ArmoredRelictInclusion","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeolConstituent.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreagcons"],"keywords":["geologic constituent","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reagcont":{"prefix":"sweet.reagcont","name":"SWEET Ontology Realm Geologic Continental","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Continental","pattern":null,"uri_format":"http://sweetontology.net/realmGeolContinental/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeolContinental/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ActiveContinent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeolContinental.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreagcont"],"keywords":["geologic continental","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reagoc":{"prefix":"sweet.reagoc","name":"SWEET Ontology Realm Geologic Oceanic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Oceanic","pattern":null,"uri_format":"http://sweetontology.net/realmGeolOceanic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeolOceanic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AccretionaryPrism","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeolOceanic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreagoc"],"keywords":["geologic oceanic","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reagor":{"prefix":"sweet.reagor","name":"SWEET Ontology Realm Geologic Orogen","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Geologic Orogen","pattern":null,"uri_format":"http://sweetontology.net/realmGeolOrogen/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmGeolOrogen/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Arc","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmGeolOrogen.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreagor"],"keywords":["geologic orogen","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reah":{"prefix":"sweet.reah","name":"SWEET Ontology Realm Hydrosphere","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere","pattern":null,"uri_format":"http://sweetontology.net/realmHydro/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmHydro/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aquiclude","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmHydro.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreah"],"keywords":["hydrosphere","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reahb":{"prefix":"sweet.reahb","name":"SWEET Ontology Realm Hydrosphere Body","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Hydrosphere Body","pattern":null,"uri_format":"http://sweetontology.net/realmHydroBody/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmHydroBody/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aqueduct","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmHydroBody.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreahb"],"keywords":["hydrosphere body","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.real":{"prefix":"sweet.real","name":"SWEET Ontology Realm Landform","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Landform","pattern":null,"uri_format":"http://sweetontology.net/realmLandform/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandform/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CentralCreekCrater","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandform.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreal"],"keywords":["landform","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reala":{"prefix":"sweet.reala","name":"SWEET Ontology Realm Land Aeolian","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Aeolian","pattern":null,"uri_format":"http://sweetontology.net/realmLandAeolian/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandAeolian/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Aeolian","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandAeolian.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreala"],"keywords":[" aeolianland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realc":{"prefix":"sweet.realc","name":"SWEET Ontology Realm Land Coastal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Coastal","pattern":null,"uri_format":"http://sweetontology.net/realmLandCoastal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandCoastal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Atoll","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandCoastal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealc"],"keywords":[" coastalland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realf":{"prefix":"sweet.realf","name":"SWEET Ontology Realm Land Fluvial","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Fluvial","pattern":null,"uri_format":"http://sweetontology.net/realmLandFluvial/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandFluvial/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Alluvial","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandFluvial.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealf"],"keywords":[" fluvialland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realg":{"prefix":"sweet.realg","name":"SWEET Ontology Realm Land Glacial","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Glacial","pattern":null,"uri_format":"http://sweetontology.net/realmLandGlacial/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandGlacial/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Arete","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandGlacial.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealg"],"keywords":[" glacialland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realo":{"prefix":"sweet.realo","name":"SWEET Ontology Realm Land Orographic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Orographic","pattern":null,"uri_format":"http://sweetontology.net/realmLandOrographic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandOrographic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Alpine","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandOrographic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealo"],"keywords":[" orographicland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realp":{"prefix":"sweet.realp","name":"SWEET Ontology Realm Land Protected","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Protected","pattern":null,"uri_format":"http://sweetontology.net/realmLandProtected/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandProtected/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CityPark","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandProtected.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealp"],"keywords":[" protectedland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realt":{"prefix":"sweet.realt","name":"SWEET Ontology Realm Land Tectonic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Tectonic","pattern":null,"uri_format":"http://sweetontology.net/realmLandTectonic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandTectonic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AseismicRidge","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandTectonic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealt"],"keywords":[" tectonicland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.realv":{"prefix":"sweet.realv","name":"SWEET Ontology Realm Land Volcanic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Land Volcanic","pattern":null,"uri_format":"http://sweetontology.net/realmLandVolcanic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmLandVolcanic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Caldera","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmLandVolcanic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorealv"],"keywords":[" volcanicland"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reao":{"prefix":"sweet.reao","name":"SWEET Ontology Realm Ocean","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean","pattern":null,"uri_format":"http://sweetontology.net/realmOcean/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmOcean/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Abyss","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmOcean.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreao"],"keywords":["ocean","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaofe":{"prefix":"sweet.reaofe","name":"SWEET Ontology Realm Ocean Feature","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Feature","pattern":null,"uri_format":"http://sweetontology.net/realmOceanFeature/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmOceanFeature/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"EarthEasternBoundaryCurrent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmOceanFeature.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaofe"],"keywords":["ocean feature","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reaofl":{"prefix":"sweet.reaofl","name":"SWEET Ontology Realm Ocean Floor","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Ocean Floor","pattern":null,"uri_format":"http://sweetontology.net/realmOceanFloor/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmOceanFloor/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbyssalHill","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmOceanFloor.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreaofl"],"keywords":["ocean floor","realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.rear":{"prefix":"sweet.rear","name":"SWEET Ontology Realm Region","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Region","pattern":null,"uri_format":"http://sweetontology.net/realmRegion/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmRegion/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Austral","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmRegion.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorear"],"keywords":["realm","region"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reas":{"prefix":"sweet.reas","name":"SWEET Ontology Realm Soil","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Realm Soil","pattern":null,"uri_format":"http://sweetontology.net/realmSoil/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/realmSoil/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"A_Horizon","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/realmSoil.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreas"],"keywords":["realm","soil"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.rel":{"prefix":"sweet.rel","name":"SWEET Ontology Relationships","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships","pattern":null,"uri_format":"http://sweetontology.net/rela/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/rela/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"hasPhenomena","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/rela.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorel"],"keywords":["relationships"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relch":{"prefix":"sweet.relch","name":"SWEET Ontology Relationships Chemical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Chemical","pattern":null,"uri_format":"http://sweetontology.net/relaChemical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaChemical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"atomicMass","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaChemical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelch"],"keywords":["chemical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relcl":{"prefix":"sweet.relcl","name":"SWEET Ontology Relationships Climate","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Climate","pattern":null,"uri_format":"http://sweetontology.net/relaClimate/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaClimate/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"hasAverageAnnualPrecipitation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaClimate.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelcl"],"keywords":["climate"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relh":{"prefix":"sweet.relh","name":"SWEET Ontology Relationships Human","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Human","pattern":null,"uri_format":"http://sweetontology.net/relaHuman/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaHuman/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"hasAttribute","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaHuman.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelh"],"keywords":["human"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relm":{"prefix":"sweet.relm","name":"SWEET Ontology Relationships Mathematical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Mathematical","pattern":null,"uri_format":"http://sweetontology.net/relaMath/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaMath/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"averageOver","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaMath.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelm"],"keywords":["mathematical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relph":{"prefix":"sweet.relph","name":"SWEET Ontology Relationships Physical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Physical","pattern":null,"uri_format":"http://sweetontology.net/relaPhysical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaPhysical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"colderThan","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaPhysical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelph"],"keywords":["physical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relpr":{"prefix":"sweet.relpr","name":"SWEET Ontology Relationships Provenance","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Provenance","pattern":null,"uri_format":"http://sweetontology.net/relaProvenance/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaProvenance/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"fillValue","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaProvenance.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelpr"],"keywords":["provenance"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relsc":{"prefix":"sweet.relsc","name":"SWEET Ontology Relationships Scientific","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Scientific","pattern":null,"uri_format":"http://sweetontology.net/relaSci/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaSci/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"causedBy","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaSci.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelsc"],"keywords":["scientific"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relsp":{"prefix":"sweet.relsp","name":"SWEET Ontology Relationships Space","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Space","pattern":null,"uri_format":"http://sweetontology.net/relaSpace/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaSpace/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"adjacentTo","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaSpace.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelsp"],"keywords":["space"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.relt":{"prefix":"sweet.relt","name":"SWEET Ontology Relationships Time","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Relationships Time","pattern":null,"uri_format":"http://sweetontology.net/relaTime/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/relaTime/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"dayOfYear","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/relaTime.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorelt"],"keywords":["time"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.rep":{"prefix":"sweet.rep","name":"SWEET Ontology Representation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation","pattern":null,"uri_format":"http://sweetontology.net/repr/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/repr/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CardinalScale","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/repr.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorep"],"keywords":["representation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdf":{"prefix":"sweet.repdf","name":"SWEET Ontology Representation Data Format","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Format","pattern":null,"uri_format":"http://sweetontology.net/reprDataFormat/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataFormat/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ByteOrder","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataFormat.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdf"],"keywords":["representation data format"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdm":{"prefix":"sweet.repdm","name":"SWEET Ontology Representation Data Model","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Model","pattern":null,"uri_format":"http://sweetontology.net/reprDataModel/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataModel/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Array","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataModel.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdm"],"keywords":["representation data model"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdp":{"prefix":"sweet.repdp","name":"SWEET Ontology Representation Data Product","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Product","pattern":null,"uri_format":"http://sweetontology.net/reprDataProduct/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataProduct/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Archive","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataProduct.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdp"],"keywords":["representation data product"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repds":{"prefix":"sweet.repds","name":"SWEET Ontology Representation Data Service","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service","pattern":null,"uri_format":"http://sweetontology.net/reprDataService/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataService/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Access","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataService.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepds"],"keywords":["representation data service"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdsa":{"prefix":"sweet.repdsa","name":"SWEET Ontology Representation Data Servcie Analysis","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Servcie Analysis","pattern":null,"uri_format":"http://sweetontology.net/reprDataServiceAnalysis/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataServiceAnalysis/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Animate","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataServiceAnalysis.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdsa"],"keywords":["representation data servcie analysis"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdsg":{"prefix":"sweet.repdsg","name":"SWEET Ontology Representation Data Service Geospatial","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Geospatial","pattern":null,"uri_format":"http://sweetontology.net/reprDataServiceGeospatial/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataServiceGeospatial/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Buffer","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataServiceGeospatial.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdsg"],"keywords":["representation data service geospatial"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdsr":{"prefix":"sweet.repdsr","name":"SWEET Ontology Representation Data Service Reduction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Reduction","pattern":null,"uri_format":"http://sweetontology.net/reprDataServiceReduction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataServiceReduction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Binning","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataServiceReduction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdsr"],"keywords":["representation data service reduction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repdsv":{"prefix":"sweet.repdsv","name":"SWEET Ontology Representation Data Service Validation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Data Service Validation","pattern":null,"uri_format":"http://sweetontology.net/reprDataServiceValidation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprDataServiceValidation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Acceptance","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprDataServiceValidation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepdsv"],"keywords":["representation data service validation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repm":{"prefix":"sweet.repm","name":"SWEET Ontology Representation Mathematics","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics","pattern":null,"uri_format":"http://sweetontology.net/reprMath/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMath/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Array","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMath.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepm"],"keywords":["representation mathematics"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmf":{"prefix":"sweet.repmf","name":"SWEET Ontology Representation Mathematics Function","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function","pattern":null,"uri_format":"http://sweetontology.net/reprMathFunction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathFunction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Affine","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathFunction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmf"],"keywords":["representation mathematics function"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmfo":{"prefix":"sweet.repmfo","name":"SWEET Ontology Representation Mathematics Function Orthogonal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Function Orthogonal","pattern":null,"uri_format":"http://sweetontology.net/reprMathFunctionOrthogonal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathFunctionOrthogonal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Coefficient","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathFunctionOrthogonal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmfo"],"keywords":["representation mathematics function orthogonal"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmg":{"prefix":"sweet.repmg","name":"SWEET Ontology Representation Mathematics Graph","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Graph","pattern":null,"uri_format":"http://sweetontology.net/reprMathGraph/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathGraph/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Arc","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathGraph.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmg"],"keywords":["representation mathematics graph"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmo":{"prefix":"sweet.repmo","name":"SWEET Ontology Representation Mathematics Operation","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Operation","pattern":null,"uri_format":"http://sweetontology.net/reprMathOperation/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathOperation/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AreaIntegral","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathOperation.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmo"],"keywords":["representation mathematics operation"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmso":{"prefix":"sweet.repmso","name":"SWEET Ontology Representation Mathematics Solution","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Solution","pattern":null,"uri_format":"http://sweetontology.net/reprMathSolution/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathSolution/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AlgebraicSolution","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathSolution.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmso"],"keywords":["representation mathematics solution"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repmst":{"prefix":"sweet.repmst","name":"SWEET Ontology Representation Mathematics Statistics","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Mathematics Statistics","pattern":null,"uri_format":"http://sweetontology.net/reprMathStatistics/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprMathStatistics/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ANOVA","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprMathStatistics.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepmst"],"keywords":["representation mathematics statistics"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reps":{"prefix":"sweet.reps","name":"SWEET Ontology Representation Space","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space","pattern":null,"uri_format":"http://sweetontology.net/reprSpace/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpace/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Space","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpace.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreps"],"keywords":["representation space"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsc":{"prefix":"sweet.repsc","name":"SWEET Ontology Representation Scientific Component","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Component","pattern":null,"uri_format":"http://sweetontology.net/reprSciComponent/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciComponent/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Component","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciComponent.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsc"],"keywords":["representation scientific component"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repscd":{"prefix":"sweet.repscd","name":"SWEET Ontology Representation Space Coordinate","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Coordinate","pattern":null,"uri_format":"http://sweetontology.net/reprSpaceCoordinate/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpaceCoordinate/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AngularCoordinate","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpaceCoordinate.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepscd"],"keywords":["representation space coordinate"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsd":{"prefix":"sweet.repsd","name":"SWEET Ontology Representation Space Direction","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Direction","pattern":null,"uri_format":"http://sweetontology.net/reprSpaceDirection/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpaceDirection/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Counterclockwise","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpaceDirection.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsd"],"keywords":["representation space direction"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsf":{"prefix":"sweet.repsf","name":"SWEET Ontology Representation Scientific Function","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Function","pattern":null,"uri_format":"http://sweetontology.net/reprSciFunction/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciFunction/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AdiabaticInvariant","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciFunction.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsf"],"keywords":["representation scientific function"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsg":{"prefix":"sweet.repsg","name":"SWEET Ontology Representation Space Geometry","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry","pattern":null,"uri_format":"http://sweetontology.net/reprSpaceGeometry/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpaceGeometry/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Arc","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpaceGeometry.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsg"],"keywords":["representation space geometry"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsg3":{"prefix":"sweet.repsg3","name":"SWEET Ontology Representation Space Geometry 3D","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Geometry 3D","pattern":null,"uri_format":"http://sweetontology.net/reprSpaceGeometry3D/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpaceGeometry3D/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AirSpace","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpaceGeometry3D.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsg3"],"keywords":["representation space geometry 3d"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsl":{"prefix":"sweet.repsl","name":"SWEET Ontology Representation Scientific Law","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Law","pattern":null,"uri_format":"http://sweetontology.net/reprSciLaw/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciLaw/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BernoulliTheorem","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciLaw.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsl"],"keywords":["representation scientific law"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsme":{"prefix":"sweet.repsme","name":"SWEET Ontology Representation Representation Scientific Methodology","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Representation Scientific Methodology","pattern":null,"uri_format":"http://sweetontology.net/reprSciMethodology/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciMethodology/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AerialPhotography","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciMethodology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsme"],"keywords":["representation representation scientific methodology"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsmo":{"prefix":"sweet.repsmo","name":"SWEET Ontology Representation Scientific Model","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Model","pattern":null,"uri_format":"http://sweetontology.net/reprSciModel/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciModel/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BoussinesqApproximation","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciModel.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsmo"],"keywords":["representation scientific model"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsp":{"prefix":"sweet.repsp","name":"SWEET Ontology Representation Science Provenance","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Science Provenance","pattern":null,"uri_format":"http://sweetontology.net/reprSciProvenance/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciProvenance/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Agent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciProvenance.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsp"],"keywords":["representation science provenance"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsrs":{"prefix":"sweet.repsrs","name":"SWEET Ontology Representation Space Reference System","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Space Reference System","pattern":null,"uri_format":"http://sweetontology.net/reprSpaceReferenceSystem/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSpaceReferenceSystem/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"HorizontalCoordinateSystem","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSpaceReferenceSystem.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsrs"],"keywords":["representation space reference system"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repsu":{"prefix":"sweet.repsu","name":"SWEET Ontology Representation Scientific Units","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Scientific Units","pattern":null,"uri_format":"http://sweetontology.net/reprSciUnits/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprSciUnits/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BaseUnit","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprSciUnits.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepsu"],"keywords":["representation scientific units"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.rept":{"prefix":"sweet.rept","name":"SWEET Ontology Representation Time","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time","pattern":null,"uri_format":"http://sweetontology.net/reprTime/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprTime/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Duration","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprTime.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorept"],"keywords":["representation time"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.reptd":{"prefix":"sweet.reptd","name":"SWEET Ontology Representation Time Day","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Day","pattern":null,"uri_format":"http://sweetontology.net/reprTimeDay/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprTimeDay/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Dawn","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprTimeDay.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["soreptd"],"keywords":["representation time day"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.repts":{"prefix":"sweet.repts","name":"SWEET Ontology Representation Time Season","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for Representation Time Season","pattern":null,"uri_format":"http://sweetontology.net/reprTimeSeason/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/reprTimeSeason/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ColdestMonth","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/reprTimeSeason.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sorepts"],"keywords":["representation time season"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.st":{"prefix":"sweet.st","name":"SWEET Ontology State","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State","pattern":null,"uri_format":"http://sweetontology.net/state/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/state/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BinaryState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/state.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sost"],"keywords":["state"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stb":{"prefix":"sweet.stb","name":"SWEET Ontology State Biological","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Biological","pattern":null,"uri_format":"http://sweetontology.net/stateBiological/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateBiological/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BiologicalState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateBiological.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostb"],"keywords":["state biological"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stc":{"prefix":"sweet.stc","name":"SWEET Ontology State Chemical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Chemical","pattern":null,"uri_format":"http://sweetontology.net/stateChemical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateChemical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BiochemicalState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateChemical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostc"],"keywords":["state chemical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stdp":{"prefix":"sweet.stdp","name":"SWEET Ontology State Data Processing","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Data Processing","pattern":null,"uri_format":"http://sweetontology.net/stateDataProcessing/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateDataProcessing/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Archived","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateDataProcessing.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostdp"],"keywords":["state data processing"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stef":{"prefix":"sweet.stef","name":"SWEET Ontology State Energy Flux","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Energy Flux","pattern":null,"uri_format":"http://sweetontology.net/stateEnergyFlux/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateEnergyFlux/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AClass","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateEnergyFlux.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostef"],"keywords":["state energy flux"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stf":{"prefix":"sweet.stf","name":"SWEET Ontology State Fluid","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Fluid","pattern":null,"uri_format":"http://sweetontology.net/stateFluid/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateFluid/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"FluidEquilibriumState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateFluid.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostf"],"keywords":["state fluid"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.sto":{"prefix":"sweet.sto","name":"SWEET Ontology State Ordinal","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Ordinal","pattern":null,"uri_format":"http://sweetontology.net/stateOrdinal/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateOrdinal/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Acute","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateOrdinal.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sosto"],"keywords":["state ordinal"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stp":{"prefix":"sweet.stp","name":"SWEET Ontology State Physical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Physical","pattern":null,"uri_format":"http://sweetontology.net/statePhysical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/statePhysical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"MoistureState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/statePhysical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostp"],"keywords":["state physical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.strb":{"prefix":"sweet.strb","name":"SWEET Ontology State Role Biological","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Biological","pattern":null,"uri_format":"http://sweetontology.net/stateRoleBiological/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleBiological/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Autotroph","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleBiological.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostrb"],"keywords":["state role biological"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.strc":{"prefix":"sweet.strc","name":"SWEET Ontology State Role Chemical","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Chemical","pattern":null,"uri_format":"http://sweetontology.net/stateRoleChemical/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleChemical/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ChemicalRole","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleChemical.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostrc"],"keywords":["state role chemical"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stre":{"prefix":"sweet.stre","name":"SWEET Ontology State Realm","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Realm","pattern":null,"uri_format":"http://sweetontology.net/stateRealm/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRealm/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"RealmConfiguration","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRealm.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostre"],"keywords":["state realm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.strg":{"prefix":"sweet.strg","name":"SWEET Ontology State Role Geographic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Geographic","pattern":null,"uri_format":"http://sweetontology.net/stateRoleGeographic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleGeographic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Barrier","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleGeographic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostrg"],"keywords":["state role geographic"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stri":{"prefix":"sweet.stri","name":"SWEET Ontology State Role Impact","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Impact","pattern":null,"uri_format":"http://sweetontology.net/stateRoleImpact/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleImpact/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Catastrophic","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleImpact.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostri"],"keywords":["state role impact"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stro":{"prefix":"sweet.stro","name":"SWEET Ontology State Role","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role","pattern":null,"uri_format":"http://sweetontology.net/stateRole/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRole/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ConductionRole","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRole.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostro"],"keywords":["state role"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.strr":{"prefix":"sweet.strr","name":"SWEET Ontology State Role Representative","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Representative","pattern":null,"uri_format":"http://sweetontology.net/stateRoleRepresentative/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleRepresentative/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"RepresentativeRole","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleRepresentative.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostrr"],"keywords":["state role representative"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.strt":{"prefix":"sweet.strt","name":"SWEET Ontology State Role Trust","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Role Trust","pattern":null,"uri_format":"http://sweetontology.net/stateRoleTrust/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateRoleTrust/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accurate","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateRoleTrust.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostrt"],"keywords":["state role trust"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stsb":{"prefix":"sweet.stsb","name":"SWEET Ontology State Spectral Band","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Band","pattern":null,"uri_format":"http://sweetontology.net/stateSpectralBand/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSpectralBand/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BandLimited","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSpectralBand.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostsb"],"keywords":["state spectral band"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stsc":{"prefix":"sweet.stsc","name":"SWEET Ontology State Space Configuration","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Configuration","pattern":null,"uri_format":"http://sweetontology.net/stateSpaceConfiguration/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSpaceConfiguration/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Antumbra","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSpaceConfiguration.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostsc"],"keywords":["state space configuration"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stsl":{"prefix":"sweet.stsl","name":"SWEET Ontology State Spectral Line","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Spectral Line","pattern":null,"uri_format":"http://sweetontology.net/stateSpectralLine/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSpectralLine/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"CaK","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSpectralLine.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostsl"],"keywords":["state spectral line"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stso":{"prefix":"sweet.stso","name":"SWEET Ontology State Solid","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Solid","pattern":null,"uri_format":"http://sweetontology.net/stateSolid/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSolid/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"SolidState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSolid.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostso"],"keywords":["state solid"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stsp":{"prefix":"sweet.stsp","name":"SWEET Ontology State Space","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space","pattern":null,"uri_format":"http://sweetontology.net/stateSpace/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSpace/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Big","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSpace.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostsp"],"keywords":["state space"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stss":{"prefix":"sweet.stss","name":"SWEET Ontology State Space Scale","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Space Scale","pattern":null,"uri_format":"http://sweetontology.net/stateSpaceScale/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSpaceScale/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Continental","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSpaceScale.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostss"],"keywords":["state space scale"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stst":{"prefix":"sweet.stst","name":"SWEET Ontology State Storm","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Storm","pattern":null,"uri_format":"http://sweetontology.net/stateStorm/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateStorm/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"BeaufortScale","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateStorm.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostst"],"keywords":["state storm"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stsy":{"prefix":"sweet.stsy","name":"SWEET Ontology State System","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State System","pattern":null,"uri_format":"http://sweetontology.net/stateSystem/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateSystem/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Coherent","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateSystem.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostsy"],"keywords":["state system"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.sttc":{"prefix":"sweet.sttc","name":"SWEET Ontology State Time Cycle","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Cycle","pattern":null,"uri_format":"http://sweetontology.net/stateTimeCycle/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateTimeCycle/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ElNino","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateTimeCycle.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sosttc"],"keywords":["state time cycle"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.sttf":{"prefix":"sweet.sttf","name":"SWEET Ontology State Time Frequency","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Frequency","pattern":null,"uri_format":"http://sweetontology.net/stateTimeFrequency/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateTimeFrequency/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Annual","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateTimeFrequency.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sosttf"],"keywords":["state time frequency"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.sttg":{"prefix":"sweet.sttg","name":"SWEET Ontology State Time Geologic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time Geologic","pattern":null,"uri_format":"http://sweetontology.net/stateTimeGeologic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateTimeGeologic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0MYA","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateTimeGeologic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sosttg"],"keywords":["state time geologic"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stth":{"prefix":"sweet.stth","name":"SWEET Ontology State Thermodynamic","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Thermodynamic","pattern":null,"uri_format":"http://sweetontology.net/stateThermodynamic/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateThermodynamic/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ThermodynamicState","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateThermodynamic.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostth"],"keywords":["state thermodynamic"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stti":{"prefix":"sweet.stti","name":"SWEET Ontology State Time","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Time","pattern":null,"uri_format":"http://sweetontology.net/stateTime/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateTime/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Age","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateTime.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostti"],"keywords":["state time"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"sweet.stv":{"prefix":"sweet.stv","name":"SWEET Ontology State Visibility","description":"The Semantic Web for Earth and Environmental Terminology (SWEET) ontology for State Visibility","pattern":null,"uri_format":"http://sweetontology.net/stateVisibility/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://sweetontology.net/stateVisibility/","repository":"https://github.com/ESIPFed/sweet","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Clear","example_extras":null,"example_decoys":null,"license":"CC0-1.0","version":null,"part_of":"sweet","part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://github.com/ESIPFed/sweet/raw/refs/heads/master/src/stateVisibility.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["sostv"],"keywords":["state visibility"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1772,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"swh":{"prefix":"swh","name":null,"description":null,"pattern":"^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"swh","banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SWH","miriam":"swh","n2t":"swh"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Software Heritage is the universal archive of software source code.","examples":["1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"],"extras":{"miriam_id":"00000655","namespaceEmbeddedInLui":true},"homepage":"https://archive.softwareheritage.org","name":"Software Heritage","pattern":"^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$","prefix":"swh","status":"active","uri_format":"https://archive.softwareheritage.org/browse/swh:$1"},"n2t":{"description":"Software Heritage is the universal archive of software source code.","examples":["1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"],"extras":{"namespaceEmbeddedInLui":true},"homepage":"https://archive.softwareheritage.org","name":"Software Heritage","pattern":"^swh:[1-9]:[a-z][a-z][a-z]:[a-f0-9]+$","prefix":"swh","uri_format":"https://archive.softwareheritage.org/browse/swh:$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SWH","uri_format":"http://identifiers.org/swh/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"swiss-model":{"prefix":"swiss-model","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Torsten Schwede","orcid":"0000-0003-2715-335X","email":"torsten.schwede@unibas.ch","github":null},"contact_extras":null,"contact_group_email":"help-swissmodel@unibas.ch","contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":"uniprot","download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SWISS-MODEL","miriam":"swiss-model","n2t":"swiss-model","prefixcommons":"swissmodel","re3data":"r3d100010605"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"27899672","doi":"10.1093/nar/gkw1132","pmc":"PMC5210589","title":"The SWISS-MODEL Repository-new features and functionality","year":2016},{"pubmed":"24782522","doi":"10.1093/nar/gku340","pmc":"PMC4086089","title":"SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information","year":2014},{"pubmed":"18931379","doi":"10.1093/nar/gkn750","pmc":"PMC2686475","title":"The SWISS-MODEL Repository and associated resources","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.","examples":["P23298"],"extras":{"miriam_id":"00000231","namespaceEmbeddedInLui":false},"homepage":"https://swissmodel.expasy.org","name":"SWISS-MODEL Repository","pattern":"^\\w+$","prefix":"swiss-model","status":"active","uri_format":"https://swissmodel.expasy.org/repository/uniprot/$1"},"n2t":{"description":"The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.","examples":["P23298"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"https://swissmodel.expasy.org","name":"SWISS-MODEL at SIB Swiss Institute of Bioinformatics","pattern":"^\\w+$","prefix":"swiss-model","uri_format":"https://swissmodel.expasy.org/repository/uniprot/$1"},"prefixcommons":{"description":"The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for sequences registered is SWISS-PROT.","examples":["P23298"],"homepage":"http://swissmodel.expasy.org/","keywords":["protein","structure"],"name":"SWISS-MODEL repository of 3D protein structure models","pattern":"^\\w+$","prefix":"swissmodel","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/swissmodel:$1"}],"publications":[{"pubmed":"18931379"}],"uri_format":"http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SWISS-MODEL","uri_format":"http://identifiers.org/swiss-model/$1"},"edam":null,"re3data":{"description":"The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.","homepage":"https://swissmodel.expasy.org/repository/","license":{"name":"Copyrights"},"name":"SWISS-MODEL Repository","prefix":"r3d100010605","prefix_synonyms":["SMR"],"xrefs":{"doi":"10.17616/R3R311","nif":"0000-03522"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"swissregulon":{"prefix":"swissregulon","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"SWISSREGULON","integbio":"nbdc02225","miriam":"swissregulon","n2t":"swissregulon"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"23180783","doi":"10.1093/nar/gks1145","pmc":"PMC3531101","title":"SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates","year":2012},{"pubmed":"17130146","doi":"10.1093/nar/gkl857","pmc":"PMC1716717","title":"SwissRegulon: a database of genome-wide annotations of regulatory sites","year":2006},{"pubmed":"17130146","doi":"10.1093/nar/gkl857","pmc":null,"title":null,"year":null},{"pubmed":"23180783","doi":"10.1093/nar/gks1145","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.","examples":["AHR"],"extras":{"miriam_id":"00000632","namespaceEmbeddedInLui":false},"homepage":"http://swissregulon.unibas.ch","name":"SwissRegulon","pattern":"^[A-Za-z0-9]+$","prefix":"swissregulon","status":"active","uri_format":"http://swissregulon.unibas.ch/query/$1"},"n2t":{"description":"A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.","examples":["AHR"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://swissregulon.unibas.ch","name":"SwissRegulon","pattern":"^[A-Za-z0-9]+$","prefix":"swissregulon","uri_format":"http://swissregulon.unibas.ch/query/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"SWISSREGULON","uri_format":"http://identifiers.org/swissregulon/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input information including i) Experimentally determined binding sites reported in the literature, ii) Known sequence-specificities of transcription factors, iii) ChIP-chip and ChIP-seq data, iiii) Alignments of orthologous non-coding regions.","homepage":"http://swissregulon.unibas.ch/sr/","keywords":["Genome/Gene","Epigenetics","Sequence","Expression","Interaction/Pathway"],"name":"SwissRegulon","prefix":"nbdc02225","publications":[{"doi":"10.1093/nar/gkl857","pubmed":"17130146"},{"doi":"10.1093/nar/gks1145","pubmed":"23180783"}],"status":"active","xrefs":{"fairsharing":"biodbcore-000879"}},"pathguide":null,"tib":null},"swo":{"prefix":"swo","name":null,"description":null,"pattern":"^\\d{7,8}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"ebi","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/license","uri_format":"http://www.ebi.ac.uk/swo/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.efo","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/efo/swo/","uri_format":"http://www.ebi.ac.uk/efo/swo/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.license","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/license","uri_format":"http://www.ebi.ac.uk/swo/license/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.objective","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/objective","uri_format":"http://www.ebi.ac.uk/swo/objective/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.version","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/version","uri_format":"http://www.ebi.ac.uk/swo/version/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.algorithm","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/algorithm","uri_format":"http://www.ebi.ac.uk/swo/algorithm/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.organization","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/organization","uri_format":"http://www.ebi.ac.uk/swo/organization/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.interface","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/interface","uri_format":"http://www.ebi.ac.uk/swo/interface/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.data","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/data","uri_format":"http://www.ebi.ac.uk/swo/data/SWO_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"ebi.maturity","name":"Legacy EBI SWO","description":"The EBI's old SWO URIs before switching over to OBO PURLs","homepage":"http://www.ebi.ac.uk/swo/maturity","uri_format":"http://www.ebi.ac.uk/swo/maturity/SWO_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Allyson Lister","orcid":"0000-0002-7702-4495","email":"allyson.lister@oerc.ox.ac.uk","github":"allysonlister"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000144","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":"https://raw.githubusercontent.com/allysonlister/swo/master/swo.owl","download_obo":null,"download_json":"https://raw.githubusercontent.com/allysonlister/swo/master/swo.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SWO","biocontext":"SWO","bioportal":"SWO","fairsharing":"FAIRsharing.sp3szt","obofoundry":"swo","ols":"swo","ontobee":"SWO","prefixcommons":"swo","tib":"swo","wikidata.entity":"Q113014439"},"synonyms":null,"keywords":["license"],"domain":null,"references":null,"publications":[{"pubmed":"25068035","doi":"10.1186/2041-1480-5-25","pmc":"PMC4098953","title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","year":2014},{"pubmed":null,"doi":"10.1186/2041-1480-5-25","pmc":null,"title":null,"year":null},{"pubmed":"25068035","doi":"10.1186/2041-1480-5-25","pmc":null,"title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","year":2014},{"pubmed":"25068035","doi":null,"pmc":null,"title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The Software Ontology (SWO) has the scope of describing types of software used in Bioinformatics. The SWO covers areas such as the software type, the manufacturer of the software, the input and output data types and the uses (i.e. objectives) the software can be put to. The SWO intends to use BFO as an upper level ontolgoy and subclasses types from the Ontology of Biomedical Investigations. Contact James Malone for info: malone@ebi.ac.uk","examples":["SWO_0000396"],"homepage":"http://theswo.sourceforge.net","name":"Software Ontology","pattern":"^SWO_\\d{7}$","prefix":"swo","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/swo:$1"}],"uri_format_rdf":"http://www.ebi.ac.uk/efo/swo/$1","xrefs":{"bioportal":"1413"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["mcro"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/swo.owl"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/swo.json"}],"contact":{"email":"allyson.lister@oerc.ox.ac.uk","github":"allysonlister","name":"Allyson Lister","orcid":"0000-0002-7702-4495"},"description":"The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.","domain":"information technology","homepage":"https://github.com/allysonlister/swo","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Software ontology","preferred_prefix":"SWO","prefix":"swo","publications":[{"pubmed":"25068035","title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation"}],"repository":"https://github.com/allysonlister/swo","status":"active"},"bioportal":{"contact":{"email":"james@scibite.com","name":"James Malone"},"description":"The Software Ontology (SWO) describes software used in research, primarily Bioinformatics. The SWO covers areas such as the software type, licence, manufacturer of the software, the input and output data types and the uses (i.e. objectives) to which the software can be put.","homepage":"https://github.com/allysonlister/swo","name":"Software Ontology","prefix":"SWO","publications":[{"doi":"10.1186/2041-1480-5-25"}],"version":"2023-03-05"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/swo.owl"}],"description":"The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.","extras":{"version.iri":"http://www.ebi.ac.uk/swo/swo/releases/2023-03-05/swo.owl"},"homepage":"https://github.com/allysonlister/swo","name":"Software ontology","prefix":"swo","tracker":"https://github.com/allysonlister/swo/issues","version":"2023-03-05"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SWO/32/swo.owl"}],"description":"The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.","homepage":"https://github.com/allysonlister/swo","name":"Software ontology","prefix":"SWO"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Software ontology","prefix":"SWO"},"cheminf":null,"fairsharing":{"contact":{"email":"allyson.lister@oerc.ox.ac.uk","name":"Allyson Lister","orcid":"0000-0002-7702-4495"},"description":"The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. SWO also covers software manufacturer, input and output data types and the uses (i.e. objectives) to which the software can be put.","homepage":"https://github.com/allysonlister/swo","keywords":["Computer Science","Bioinformatics","algorithm"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"SoftWare Ontology","prefix":"FAIRsharing.sp3szt","publications":[{"doi":"10.1186/2041-1480-5-25","pubmed":"25068035","title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","url":"http://doi.org/10.1186/2041-1480-5-25","year":2014}],"repository":"https://github.com/allysonlister/swo/issues","short_names":["SWO"]},"biocontext":{"prefix":"SWO","uri_format":"http://purl.obolibrary.org/obo/SWO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/swo.owl"}],"description":"The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licenses, provenance and associated data.","extras":{"version.iri":"http://www.ebi.ac.uk/swo/swo/releases/2023-03-05/swo.owl"},"homepage":"https://github.com/allysonlister/swo","keywords":["NFDI4ING","NFDI4CHEM","DataPLANT","computer science"],"name":"The Software Ontology (SWO)","prefix":"swo","tracker":"https://github.com/allysonlister/swo/issues"}},"swrl":{"prefix":"swrl","name":"A Semantic Web Rule Language Combining OWL and RuleML","description":"SWRL enables Horn-like rules to be combined with an OWL knowledge base.","pattern":null,"uri_format":"http://www.w3.org/2003/11/swrl#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.w3.org/2003/11/swrl#","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Variable","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"lov":"swrl"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":"swrl","mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":{"description":"OWL definition of the RDF Concrete Syntax for the Semantic Web Rule Language","homepage":"http://www.w3.org/2003/11/swrl","keywords":["Vocabularies"],"name":"Semantic Web Rule Language","prefix":"swrl","uri_format":"http://www.w3.org/2003/11/swrl#$1"},"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"symp":{"prefix":"symp","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/SYMP_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0019171","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":"http://purl.obolibrary.org/obo/symp.json","download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"SYMP","biocontext":"SYMP","bioportal":"SYMP","fairsharing":"FAIRsharing.ay74mj","obofoundry":"symp","ols":"symp","ontobee":"SYMP","prefixcommons":"symptom","wikidata":"P8656","wikidata.entity":"Q81661810"},"synonyms":["SYMP"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"34755882","doi":"10.1093/nar/gkab1063","pmc":"PMC8728220","title":"The Human Disease Ontology 2022 update","year":2022},{"pubmed":"19850722","doi":"10.1093/nar/gkp832","pmc":"PMC2808878","title":"GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database","year":2009},{"pubmed":"19850722","doi":"10.1093/nar/gkp832","pmc":null,"title":"GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database","year":2010},{"pubmed":"37953304","doi":"10.1093/nar/gkad1051","pmc":null,"title":"The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem","year":2023},{"pubmed":"19850722","doi":null,"pmc":null,"title":"GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database","year":null},{"pubmed":"34755882","doi":null,"pmc":null,"title":"The Human Disease Ontology 2022 update","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"The symptom ontology was designed around the guiding concept of a symptom being: \"A perceived change in function, sensation or appearance reported by a patient indicative of a disease\"","examples":["SYMP_0000461"],"homepage":"http://symptomontologywiki.igs.umaryland.edu/wiki/index.php/Main_Page","keywords":["obo","ontology"],"name":"Symptom Ontology","pattern":"^SYMP_\\d{7}$","prefix":"symptom","prefix_synonyms":["symptomontology","symp"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/symptom:$1"}],"xrefs":{"bioportal":"1224"}},"wikidata":{"description":"identifier in the Symptom Ontology","examples":["0000007","0000099"],"homepage":"https://github.com/DiseaseOntology/SymptomOntology","name":"Symptom Ontology ID","prefix":"P8656","uri_format":"https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_$1","uri_format_rdf":"http://purl.obolibrary.org/obo/SYMP_$1","xrefs":{"wikidata":"Q81661810"}},"wikidata_entity":null,"go":null,"obofoundry":{"appears_in":["scdo"],"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/symp.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/symp.obo"}],"contact":{"email":"lynn.schriml@gmail.com","github":"lschriml","name":"Lynn Schriml","orcid":"0000-0001-8910-9851"},"description":"An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease.","domain":"health","homepage":"https://github.com/DiseaseOntology/SymptomOntology","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Symptom Ontology","preferred_prefix":"SYMP","prefix":"symp","publications":[{"pubmed":"19850722","title":"GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database"},{"pubmed":"34755882","title":"The Human Disease Ontology 2022 update"}],"repository":"https://github.com/DiseaseOntology/SymptomOntology","status":"active","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"lynn.schriml@gmail.com","name":"Lynn Schriml"},"description":"The symptom ontology was designed around the guiding concept of a symptom being: \"A perceived change in function, sensation or appearance reported by a patient indicative of a disease\". Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it's scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom","homepage":"https://disease-ontology.org","name":"Symptom Ontology","prefix":"SYMP","version":"2024-05-17"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/symp.owl"}],"description":"The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.","extras":{"version.iri":"http://purl.obolibrary.org/obo/symp/releases/2024-05-17/symp.owl"},"homepage":"https://github.com/DiseaseOntology/SymptomOntology","name":"Symptom Ontology","prefix":"symp","tracker":"https://github.com/DiseaseOntology/SymptomOntology/issues","version":"2024-05-17"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/SYMP/42/symp.owl"}],"description":"An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease.","homepage":"http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page","name":"Symptom Ontology","prefix":"SYMP"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Symptom Ontology","prefix":"SYMP"},"cheminf":null,"fairsharing":{"contact":{"email":"lynn.schriml@gmail.com","name":"Lynn Schriml","orcid":"0000-0001-8910-9851"},"description":"The symptom ontology was designed around the guiding concept of a symptom being: \"A perceived change in function, sensation or appearance reported by a patient indicative of a disease\". There is a close relationship between Signs and Symptoms, where Signs are the objective observation of an illness. The Symptom Ontology will work to broaden its scope to capture and document in a more robust manor these two sets of terms. At times, the same term may be both a Sign and a Symptom.","homepage":"https://disease-ontology.org/resources/symptom-ontology","keywords":["Life Science","Pain Medicine","Biomedical Science","Patient Care","disease","diagnosis"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Symptom Ontology","prefix":"FAIRsharing.ay74mj","publications":[{"doi":"10.1093/nar/gkp832","pubmed":"19850722","title":"GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database","url":"https://doi.org/10.1093/nar/gkp832","year":2010},{"doi":"10.1093/nar/gkad1051","pubmed":"37953304","title":"The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem","url":"http://dx.doi.org/10.1093/nar/gkad1051","year":2023}],"repository":"https://github.com/DiseaseOntology/SymptomOntology/issues","short_names":["SYMP"]},"biocontext":{"prefix":"SYMP","uri_format":"http://purl.obolibrary.org/obo/SYMP_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"synapse":{"prefix":"synapse","name":null,"description":null,"pattern":null,"uri_format":"https://www.synapse.org/Synapse:syn$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Kevin Boske","orcid":"0000-0002-3278-5207","email":"kevin.boske@sagebase.org","github":"kevinboske"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"integbio":"nbdc02162","miriam":"synapse","re3data":"r3d100011894","wikidata.entity":"Q56328412"},"synonyms":["syn"],"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.","examples":["41455251.1"],"extras":{"miriam_id":"00001043","namespaceEmbeddedInLui":false},"homepage":"https://sagebionetworks.org","name":"Synapse Data Repository","pattern":"^[0-9]*\\.*[0-9]*$","prefix":"synapse","status":"active","uri_format":"https://repo-prod.prod.sagebase.org/ga4gh/drs/v1/objects/syn$1"},"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":{"description":"Synapse is an open source software platform that clinical and biological data scientists can use to carry out, track, and communicate their research in real time. Synapse enables co-location of scientific content (data, code, results) and narrative descriptions of that work.","homepage":"https://www.synapse.org","name":"Synapse","prefix":"r3d100011894","xrefs":{"doi":"10.17616/R3B934"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"Synapse is a collaborative research platform that allows individuals and teams to share, track, and discuss their data and analysis in projects. Synapse allows researchers to share and describe data, analyses, and other content. Data and analyses can be stored in many types of locations, including private servers, local hard drives, or cloud storage. Synapse provides a common interface to describe these data or analyses, where they come from, and how to use them. Synapse also provides mechanisms for adding and retrieving data, analyses, and their respective descriptions.","homepage":"https://www.synapse.org/","keywords":["Method","Bibliography/Documents","Repository"],"name":"Synapse","prefix":"nbdc02162","publications":[{"pubmed":"24071850"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.dnxzmk"}},"pathguide":null,"tib":null},"synbip.bts":{"prefix":"synbip.bts","name":"Synthetic Binding Proteins Binding Target","description":"Identifiers for the binding targets of synthetic binding proteins (SBP), describing the specific molecules or complexes that SBPs interact with for their intended applications","pattern":"^st\\d+$","uri_format":"http://synbip.idrblab.net/data/bts/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://synbip.idrblab.net","repository":null,"contact":{"name":"Fengcheng Li","orcid":"0000-0002-1846-639X","email":"lifengcheng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"st00576","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39413165","doi":"10.1093/nar/gkae893","pmc":null,"title":"SYNBIP 2.0: epitopes mapping, sequence expansion and scaffolds discovery for synthetic binding protein innovation","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1268,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"synbip.epitope":{"prefix":"synbip.epitope","name":"Synthetic Binding Protein Epitope","description":"Identifiers for synthetic binding protein-target complexes, detailing their components, 3D structures and docking statistics","pattern":"^mt\\d+$","uri_format":"http://synbip.idrblab.net/data/sbp-target-complex/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://synbip.idrblab.net","repository":null,"contact":{"name":"Fengcheng Li","orcid":"0000-0002-1846-639X","email":"lifengcheng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"mt002305","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39413165","doi":"10.1093/nar/gkae893","pmc":null,"title":"SYNBIP 2.0: epitopes mapping, sequence expansion and scaffolds discovery for synthetic binding protein innovation","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1268,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"synbip.pss":{"prefix":"synbip.pss","name":"Synthetic Binding Protein Protein Scaffold","description":"Identifiers for the protein scaffolds of synthetic binding proteins (SBP), detailing their structural frameworks and roles in facilitating SBP function.","pattern":"^ps\\d+$","uri_format":"http://synbip.idrblab.net/data/scaffold/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://synbip.idrblab.net","repository":null,"contact":{"name":"Fengcheng Li","orcid":"0000-0002-1846-639X","email":"lifengcheng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"ps048","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39413165","doi":"10.1093/nar/gkae893","pmc":null,"title":"SYNBIP 2.0: epitopes mapping, sequence expansion and scaffolds discovery for synthetic binding protein innovation","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1268,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"synbip.sbp":{"prefix":"synbip.sbp","name":"Synthetic Binding Protein","description":"Identifiers for synthetic binding proteins, providing detailed information on their sequences, structures, targets, and functional properties for research, diagnostic, and therapeutic applications.","pattern":"^sbp\\d+$","uri_format":"http://synbip.idrblab.net/data/sbp/details/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://synbip.idrblab.net","repository":null,"contact":{"name":"Fengcheng Li","orcid":"0000-0002-1846-639X","email":"lifengcheng@zju.edu.cn","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"sbp000002","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"39413165","doi":"10.1093/nar/gkae893","pmc":null,"title":"SYNBIP 2.0: epitopes mapping, sequence expansion and scaffolds discovery for synthetic binding protein innovation","year":2024}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"contributor_extras":null,"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1268,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"syoid":{"prefix":"syoid","name":"Gemina Symptom Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":["https://github.com/DiseaseOntology/SymptomOntology/issues/7#event-4223716562"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"t3db":{"prefix":"t3db","name":"Toxin and Toxin Target Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"T3DB","edam":"2662","miriam":"t3db","n2t":"t3db","pathguide":"326","prefixcommons":"t3db","re3data":"r3d100012189"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"25378312","doi":"10.1093/nar/gku1004","pmc":"PMC4383875","title":"T3DB: the toxic exposome database","year":2014},{"pubmed":"19897546","doi":"10.1093/nar/gkp934","pmc":"PMC2808899","title":"T3DB: a comprehensively annotated database of common toxins and their targets","year":2009}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.","examples":["T3D0001"],"extras":{"miriam_id":"00000103","namespaceEmbeddedInLui":false},"homepage":"http://www.t3db.org/","name":"T3DB","pattern":"^T3D\\d+$","prefix":"t3db","status":"active","uri_format":"http://www.t3db.org/toxins/$1"},"n2t":{"description":"Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.","examples":["T3D0001"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.t3db.org/","name":"Toxin and Toxin Target Database","pattern":"^T3D\\d+$","prefix":"t3db","uri_format":"http://www.t3db.org/toxins/$1"},"prefixcommons":{"description":"Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.","examples":["T3D0001"],"homepage":"http://www.t3db.org/","keywords":["protein","molecule"],"license":{"name":"http://www.t3db.org/about#cite","url":"http://www.t3db.org/about#cite"},"name":"Toxin and Toxin Target Database","pattern":"^T3D\\d+$","prefix":"t3db","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/t3db:$1"}],"uri_format":"http://www.t3db.org/toxins/$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"T3DB","uri_format":"http://identifiers.org/t3db/$1"},"edam":{"description":"Unique identifier of a toxin from the Toxin and Toxin Target Database (T3DB) database.","name":"T3DB","prefix":"2662"},"re3data":{"description":"The Toxin and Toxin Target Database is a unique bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. The focus of the T3DB is on providing mechanisms of toxicity and target proteins for each toxin. This dual nature of the T3DB, in which toxin and toxin target records are interactively linked in both directions, makes it unique from existing databases.","homepage":"http://www.t3db.ca/","name":"T3DB","prefix":"r3d100012189","prefix_synonyms":["Toxic Exposome Database","Toxin and Toxin Target Database"],"xrefs":{"doi":"10.17616/R3VM0R","nif":"0000-22933","omics":"01592"}},"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.t3db.ca/","name":"Toxin and Toxin-Target Database","prefix":"326","short_names":["T3DB"]},"tib":null},"t4fs":{"prefix":"t4fs","name":"terms4FAIRskills","description":"A terminology for the skills necessary to make data FAIR and to keep it FAIR.","pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/T4FS_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/terms4fairskills/FAIRterminology","repository":"https://github.com/terms4fairskills/FAIRterminology","contact":{"name":"Allyson Lister","orcid":"0000-0002-7702-4495","email":"allyson.lister@oerc.ox.ac.uk","github":"allysonlister"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000127","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"T4FS","bioportal":"T4FS","fairsharing":"FAIRsharing.fb99fa","obofoundry":"t4fs","ols":"t4fs","ontobee":"T4FS","tib":"t4fs"},"synonyms":null,"keywords":["competence","skills"],"domain":null,"references":null,"publications":[{"pubmed":null,"doi":"10.5281/zenodo.4705219","pmc":null,"title":"EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report","year":2021},{"pubmed":null,"doi":"10.5281/zenodo.4772741","pmc":null,"title":"EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report","year":2021}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/t4fs.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/t4fs.obo"},{"type":"obograph_json","url":"http://purl.obolibrary.org/obo/t4fs.json"}],"contact":{"email":"allyson.lister@oerc.ox.ac.uk","github":"allysonlister","name":"Allyson Lister","orcid":"0000-0002-7702-4495"},"description":"A terminology for the skills necessary to make data FAIR and to keep it FAIR.","domain":"information","homepage":"https://github.com/terms4fairskills/FAIRterminology","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"terms4FAIRskills","preferred_prefix":"T4FS","prefix":"t4fs","publications":[{"doi":"10.5281/zenodo.4705219","title":"EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report"}],"repository":"https://github.com/terms4fairskills/FAIRterminology","status":"active"},"bioportal":{"contact":{"email":"allyson.lister@oerc.ox.ac.uk","name":"Allyson Lister"},"description":"A terminology for the skills necessary to make data FAIR and to keep it FAIR","homepage":"https://github.com/terms4fairskills/FAIRterminology","name":"terms4FAIRskills","prefix":"T4FS","version":"2025-02-09"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/t4fs.owl"}],"description":"A terminology for the skills necessary to make data FAIR and to keep it FAIR.","extras":{"version.iri":"http://purl.obolibrary.org/obo/t4fs/releases/2025-02-09/t4fs.owl"},"homepage":"https://github.com/terms4fairskills/FAIRterminology","name":"terms4FAIRskills","prefix":"t4fs","tracker":"https://github.com/terms4fairskills/FAIRterminology/issues","version":"2025-02-09"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/T4FS/4/t4fs.owl"}],"description":"A terminology for the skills necessary to make data FAIR and to keep it FAIR.","homepage":"https://github.com/terms4fairskills/FAIRterminology","name":"terms4FAIRskills","prefix":"T4FS"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"terms4FAIRskills","prefix":"T4FS"},"cheminf":null,"fairsharing":{"contact":{"email":"allyson.lister@oerc.ox.ac.uk","name":"Allyson Lister","orcid":"0000-0002-7702-4495"},"description":"terms4FAIRskills terminology is designed to capture the necessary competencies, skills and knowledge associated with how to make data FAIR and to keep it FAIR. terms4FAIRskills terms can be implemented to serve a variety of use-case applications such as 1) creation and assessment of stewardship curricula, 2) annotation for the discovery and evaluation of various FAIR-enabling materials/resources (e.g.training, etc.), and 3) formalisation of job descriptions and CVs for recognising structured FAIR competencies for hire. User integrations include implementations from the FAIR Cookbook, FAIRsFAIR Competency Centre, FAIRassist, and Semaphora. terms4FAIRskills provides user flexibility for terms by FAIR trainers for FAIR data skills, researchers and/or data managers working to identify FAIR gaps for teams requiring support, managers recruiting specific FAIR implementation competencies, and developments leveraging FAIR competency-based reward structures and training plans.","homepage":"https://github.com/terms4fairskills/FAIRterminology","keywords":["Subject Agnostic","curated information","digital curation","FAIR"],"license":{"name":"CC-BY-4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBZ1VDIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--692c3b4cc5ea2f7aa8cc80267dad833f16dcccbb/terms4FAIRskills.png?disposition=inline","name":"terms4FAIRskills","prefix":"FAIRsharing.fb99fa","publications":[{"doi":"10.5281/zenodo.4772741","title":"EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report","url":"https://doi.org/10.5281/zenodo.4772741","year":2021}],"repository":"https://github.com/terms4fairskills","short_names":["T4FS"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/t4fs.owl"}],"description":"terms4FAIRskills describes the competencies, skills and knowledge associated with making and keeping data FAIR. This terminology applies to a variety of use cases, including: assisting with the creation and assessment of stewardship curricula; facilitating the annotation, discovery and evaluation of FAIR-enabling materials (e.g. training) and resources; enabling the formalisation of job descriptions and CVs with recognised, structured competencies.It is intended to be of use to trainers who teach FAIR data skills, researchers who wish to identify skill gaps in their teams and managers who need to recruit individuals to relevant roles.","extras":{"version.iri":"http://purl.obolibrary.org/obo/t4fs/releases/2025-02-09/t4fs.owl"},"homepage":"https://github.com/terms4fairskills/FAIRterminology","keywords":["NFDI4ING","ESS"],"name":"terms4FAIRskills (T4FS)","prefix":"t4fs","tracker":"https://github.com/terms4fairskills/FAIRterminology/issues"}},"tads":{"prefix":"tads","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000547","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/tads.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"TADS","biocontext":"TADS","bioportal":"TADS","fairsharing":"FAIRsharing.8wm364","obofoundry":"tads","ols":"tads","ontobee":"TADS"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18237287","doi":"10.1111/j.1365-2583.2008.00781.x","pmc":null,"title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tads.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/tads.obo"}],"contact":{"email":"dsonensh@odu.edu","name":"Daniel Sonenshine"},"description":"The anatomy of the Tick, Families: Ixodidae, Argassidae","domain":"anatomy and development","homepage":"https://www.vectorbase.org/ontology-browser","license":{"name":"CC BY 4.0","url":"https://creativecommons.org/licenses/by/4.0/"},"name":"Tick Anatomy Ontology","preferred_prefix":"TADS","prefix":"tads","repository":"https://github.com/VEuPathDB-ontology/TADS","status":"inactive","taxon":{"identifier":"6939","name":"Ixodidae","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"dsonensh@odu.edu","name":"Daniel Sonenshine"},"description":"The anatomy of the Tick, Families: Ixodidae, Argassidae","homepage":"http://www.anobase.org","name":"Tick Gross Anatomy Ontology","prefix":"TADS","version":"1.21"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tads.owl"}],"description":"The anatomy of the Tick, Families: Ixodidae, Argassidae","extras":{"version.iri":"http://purl.obolibrary.org/obo/tads/2015-08-20/tads.owl"},"homepage":"https://www.vectorbase.org/ontology-browser","name":"Tick Anatomy Ontology","prefix":"tads","version":"2015-08-20"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/TADS/18/tads.owl"}],"description":"The anatomy of the Tick, Families: Ixodidae, Argassidae","homepage":"https://www.vectorbase.org/ontology-browser","name":"Tick Anatomy Ontology","prefix":"TADS"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Tick Anatomy Ontology","prefix":"TADS"},"cheminf":null,"fairsharing":{"contact":{"email":"dsonensh@odu.edu","name":"Daniel Sonenshine","orcid":"0000-0001-9370-918X"},"description":"This ontology covers all the terms relevant for the gross anatomy of the tick (family Ixodida).","homepage":"https://www.vectorbase.org/ontology-types/tick-anatomy","keywords":["Life Science","Anatomy"],"name":"Tick Gross Anatomy","prefix":"FAIRsharing.8wm364","publications":[{"doi":"10.1111/j.1365-2583.2008.00781.x","pubmed":"18237287","title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","url":"http://doi.org/10.1111/j.1365-2583.2008.00781.x","year":2008}],"short_names":["TADS"]},"biocontext":{"prefix":"TADS","uri_format":"http://purl.obolibrary.org/obo/TADS_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tahe":{"prefix":"tahe","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TAHE","fairsharing":"FAIRsharing.rrms81","obofoundry":"tahe","wikidata.entity":"Q114677914"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"pierre.sprumont@unifr.ch","name":"Pierre Sprumont"},"domain":"anatomy and development","name":"Terminology of Anatomy of Human Embryology","preferred_prefix":"TAHE","prefix":"tahe","status":"inactive","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"\"Terminology of Anatomy of Human Embryology\" is a standard, specialising in the fields described under \"scope and data types\", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1536. This text was generated automatically. If you work on the project responsible for \"Terminology of Anatomy of Human Embryology\" then please consider helping us by claiming this record and updating it appropriately.","homepage":"http://bioportal.bioontology.org/ontologies/1536","keywords":["Life Science","Embryology","Anatomy","Biomedical Science"],"name":"Terminology of Anatomy of Human Embryology","prefix":"FAIRsharing.rrms81","short_names":["TAHE"]},"biocontext":{"prefix":"TAHE","uri_format":"http://purl.obolibrary.org/obo/TAHE_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tahh":{"prefix":"tahh","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TAHH","fairsharing":"FAIRsharing.rvssy8","obofoundry":"tahh","wikidata.entity":"Q114677915"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"contact":{"email":"pierre.sprumont@unifr.ch","name":"Pierre Sprumont"},"domain":"health","name":"Terminology of Anatomy of Human Histology","preferred_prefix":"TAHH","prefix":"tahh","status":"inactive","taxon":{"identifier":"9606","name":"Homo sapiens","prefix":"NCBITaxon"}},"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"\"Terminology of Anatomy of Human Histology\" is a standard, specialising in the fields described under \"scope and data types\", below. Until this entry is claimed, more information on this project can be found at http://bioportal.bioontology.org/ontologies/1535. This text was generated automatically. If you work on the project responsible for \"Terminology of Anatomy of Human Histology\" then please consider helping us by claiming this record and updating it appropriately.","homepage":"http://bioportal.bioontology.org/ontologies/1535","keywords":["Life Science","Anatomy","Biomedical Science","histological assay"],"name":"Terminology of Anatomy of Human Histology","prefix":"FAIRsharing.rvssy8","short_names":["TAHH"]},"biocontext":{"prefix":"TAHH","uri_format":"http://purl.obolibrary.org/obo/TAHH_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tair.gene":{"prefix":"tair.gene","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://arabidopsis.org/servlets/TairObject?accession=Gene:$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Aisling Doyle","orcid":"0000-0003-3871-858X","email":"aisling.doyle9@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2200934","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"Gene","banana_peel":":","deprecated":null,"mappings":{"biocontext":"TAIR.GENE","miriam":"tair.gene","n2t":"tair.gene","prefixcommons":"tair.gene"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"12444417","doi":"10.1007/s10142-002-0077-z","pmc":null,"title":"TAIR: a resource for integrated Arabidopsis data","year":2002}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.","examples":["Gene:2200934"],"extras":{"miriam_id":"00000049","namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/index.jsp","name":"TAIR Gene","pattern":"^Gene:\\d{7}$","prefix":"tair.gene","status":"active"},"n2t":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.","examples":["Gene:2200934"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/index.jsp","name":"The Arabidopsis Information Resource (TAIR) Gene","pattern":"^Gene:\\d{7}$","prefix":"tair.gene"},"prefixcommons":{"description":"The reference gene model for a given locus","examples":["Gene:2200934"],"keywords":["gene"],"name":"TAIR-Gene","pattern":"^Gene:\\d{7}$","prefix":"tair.gene","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tair.gene:$1"}],"publications":[{"pubmed":"12444417"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TAIR.GENE","uri_format":"http://identifiers.org/tair.gene/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tair.locus":{"prefix":"tair.locus","name":null,"description":null,"pattern":"^\\d+$","uri_format":"https://www.arabidopsis.org/locus?accession=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"thalemine","name":"ThaleMine","description":"Data mining on aradopsis","homepage":"https://bar.utoronto.ca/thalemine","uri_format":"https://bar.utoronto.ca/thalemine/portal.do?externalids=$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Aisling Doyle","orcid":"0000-0003-3871-858X","email":"aisling.doyle9@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TAIR.LOCUS","go":"TAIR","miriam":"tair.locus","n2t":"tair.locus","ncbi":"TAIR","prefixcommons":"tair.locus"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"12444417","doi":"10.1007/s10142-002-0077-z","pmc":null,"title":"TAIR: a resource for integrated Arabidopsis data","year":2002},{"pubmed":"12444417","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.","examples":["2200950"],"extras":{"miriam_id":"00000050","namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/","name":"TAIR Locus","pattern":"^\\d{7}$","prefix":"tair.locus","status":"active","uri_format":"https://www.arabidopsis.org/locus?accession=$1"},"n2t":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.","examples":["2200950"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/index.jsp","name":"The Arabidopsis Information Resource (TAIR) Locus","pattern":"^\\d{7}$","prefix":"tair.locus","uri_format":"http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1"},"prefixcommons":{"description":"The locus name","examples":["AT1G01030"],"keywords":["genome"],"name":"TAIR-Locus","pattern":"^AT[1-5]G\\d{5}$","prefix":"tair.locus","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tair.locus:$1"}],"publications":[{"pubmed":"12444417"}],"uri_format":"http://arabidopsis.org/servlets/TairObject?type=locus&name=$1"},"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.arabidopsis.org/","name":"The Arabidopsis Information Resource","prefix":"TAIR"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":{"examples":["AT1F51370"],"homepage":"http://www.arabidopsis.org/servlets/Search?type=gene&action=new_search","name":"Arabidopsis IR","prefix":"TAIR"},"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TAIR.LOCUS","uri_format":"http://identifiers.org/tair.locus/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tair.protein":{"prefix":"tair.protein","name":null,"description":null,"pattern":"^\\d{10}$","uri_format":"https://www.arabidopsis.org/protein?key=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"legacy","name":"Legacy","description":"This was the old URI for TAIR proteins","homepage":"https://www.arabidopsis.org","uri_format":"http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":null,"repository":null,"contact":{"name":"Aisling Doyle","orcid":"0000-0003-3871-858X","email":"aisling.doyle9@gmail.com","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"1009107926","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":"AASequence","banana_peel":":","deprecated":null,"mappings":{"biocontext":"TAIR.PROTEIN","miriam":"tair.protein","n2t":"tair.protein","prefixcommons":"tair.protein"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"12444417","doi":"10.1007/s10142-002-0077-z","pmc":null,"title":"TAIR: a resource for integrated Arabidopsis data","year":2002}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":[{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"}],"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept","examples":["AASequence:1009107926"],"extras":{"miriam_id":"00000048","namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/index.jsp","name":"TAIR Protein","pattern":"^AASequence:\\d{10}$","prefix":"tair.protein","status":"active"},"n2t":{"description":"The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept","examples":["AASequence:1009107926"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://arabidopsis.org/index.jsp","name":"The Arabidopsis Information Resource (TAIR) Protein","pattern":"^AASequence:\\d{10}$","prefix":"tair.protein"},"prefixcommons":{"description":"The protein entry","examples":["AASequence:1009107926"],"keywords":["protein"],"name":"TAIR-Protein","pattern":"^AASequence:\\d{10}$","prefix":"tair.protein","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tair.protein:$1"}],"publications":[{"pubmed":"12444417"}]},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TAIR.PROTEIN","uri_format":"http://identifiers.org/tair.protein/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tao":{"prefix":"tao","name":"Teleost Anatomy Ontology","description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000086","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"TAO","biocontext":"TAO","bioportal":"TAO","fairsharing":"FAIRsharing.abxd9x","obofoundry":"tao","ols":"tao","prefixcommons":"tao"},"synonyms":["TAO_RETIRED"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"20547776","doi":"10.1093/sysbio/syq013","pmc":"PMC2885267","title":"The teleost anatomy ontology: anatomical representation for the genomics age","year":2010},{"pubmed":"20547776","doi":"10.1093/sysbio/syq013","pmc":null,"title":"The teleost anatomy ontology: anatomical representation for the genomics age","year":2010},{"pubmed":"20547776","doi":null,"pmc":null,"title":"The teleost anatomy ontology: anatomical representation for the genomics age","year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa","examples":["TAO_0000297"],"homepage":"https://www.nescent.org/phenoscape/Main_Page","keywords":["obo","classification","anatomy"],"name":"Teleost Anatomy Ontology","pattern":"^TAO_\\d{7}$","prefix":"tao","prefix_synonyms":["teleost_anatomy"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tao:$1"}],"xrefs":{"bioportal":"1110"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tao.owl"}],"contact":{"email":"wasila.dahdul@usd.edu","name":"Wasila Dahdul","orcid":"0000-0003-3162-7490"},"description":"Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa","domain":"anatomy and development","homepage":"http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology","license":{"name":"CC0 1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"Teleost Anatomy Ontology","preferred_prefix":"TAO","prefix":"tao","publications":[{"pubmed":"20547776","title":"The teleost anatomy ontology: anatomical representation for the genomics age"}],"status":"inactive","taxon":{"identifier":"32443","name":"Teleostei","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"wasila.dahdul@usd.edu","name":"Wasila Dahdul"},"description":"TAO is a multispecies anatomy ontology for teleost fishes. Originally seeded from ZFA, but intended to cover terms relevant to other taxa.","homepage":"https://www.nescent.org/phenoscape/Main_Page","name":"Teleost Anatomy Ontology","prefix":"TAO","publications":[{"url":"http://dx.doi.org/10.1093/sysbio/syq013"}],"version":"2012-08-10"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tao.owl"}],"description":"Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa","extras":{"version.iri":"http://purl.obolibrary.org/obo/tao/2012-08-10/tao.owl"},"homepage":"http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology","name":"Teleost Anatomy Ontology","prefix":"tao","version":"2012-08-10"},"aberowl":{"artifacts":[{"type":"obo","url":"http://aber-owl.net/media/ontologies/TAO/135/tao.obo"}],"description":"TAO is a multispecies anatomy ontology for teleost fishes. Originally seeded from ZFA, but intended to cover terms relevant to other taxa.","homepage":"https://www.nescent.org/phenoscape/Main_Page","name":"Teleost Anatomy Ontology","prefix":"TAO","version":"2012-08-10"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"contact":{"email":"wasila.dahdul@usd.edu","name":"Wasila Dahdul","orcid":"0000-0003-3162-7490"},"description":"TAO is a multi-species ontology for teleost fishes that was initialized with terms from the Zebrafish Anatomical Ontology (ZFA). The development of the TAO focused on the skeletal system because it varies significantly across fishes, is well-preserved in fossil specimens, and it is often the focus of morphologically-based evolutionary studies in ichthyology. Note that TAO is a deprecated ontology and has been superceded by Uberon.","homepage":"http://purl.bioontology.org/ontology/TAO","keywords":["Life Science","Anatomy","morphology","structure"],"name":"Teleost Anatomy Ontology","prefix":"FAIRsharing.abxd9x","publications":[{"doi":"10.1093/sysbio/syq013","pubmed":"20547776","title":"The teleost anatomy ontology: anatomical representation for the genomics age","url":"http://doi.org/10.1093/sysbio/syq013","year":2010}],"short_names":["TAO"]},"biocontext":{"prefix":"TAO","uri_format":"http://purl.obolibrary.org/obo/TAO_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tarbase":{"prefix":"tarbase","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TARBASE","integbio":"nbdc02102","miriam":"tarbase","n2t":"tarbase","pathguide":"283"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"29156006","doi":"10.1093/nar/gkx1141","pmc":"PMC5753203","title":"DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions","year":2018},{"pubmed":"25416803","doi":"10.1093/nar/gku1215","pmc":"PMC4383989","title":"DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions","year":2014},{"pubmed":"18957447","doi":"10.1093/nar/gkn809","pmc":"PMC2686456","title":"The database of experimentally supported targets: a functional update of TarBase","year":2008},{"pubmed":"16373484","doi":"10.1261/rna.2239606","pmc":"PMC1370898","title":"TarBase: A comprehensive database of experimentally supported animal microRNA targets","year":2005},{"pubmed":"18957447","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16373484","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25416803","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18957447","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16373484","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25416803","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"18957447","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"16373484","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"25416803","doi":null,"pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.","examples":["hsa-let-7a-2-3p"],"extras":{"miriam_id":"00000340","namespaceEmbeddedInLui":false},"homepage":"http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index","name":"TarBase","pattern":"^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?$","prefix":"tarbase","status":"active","uri_format":"http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1"},"n2t":{"description":"TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.","examples":["hsa-let-7a-2-3p"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index","name":"TarBase v7 at University of Thessaly","pattern":"^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?","prefix":"tarbase","uri_format":"http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TARBASE","uri_format":"http://identifiers.org/tarbase/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":{"description":"DIANA-TarBase is a reference database that indexes experimentally-supported microRNA (miRNA) targets. It integrates information on cell-type specific miRNA-gene regulation and includes miRNA-binding locations. The target data provided by DIANA-TarBase is supported by information on methodologies, cell types/tissues and experimental conditions.","homepage":"http://www.microrna.gr/tarbase","keywords":["Genome/Gene","RNA","Bibliography/Documents","Method","Interaction/Pathway"],"name":"TarBase","prefix":"nbdc02102","publications":[{"pubmed":"18957447"},{"pubmed":"16373484"},{"pubmed":"25416803"}],"status":"active","xrefs":{"fairsharing":"FAIRsharing.a0k4cd"}},"pathguide":{"homepage":"http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index","name":"TarBase","prefix":"283","short_names":["TarBase"]},"tib":null},"taxrank":{"prefix":"taxrank","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/TAXRANK_$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"TAXRANK","agroportal":"TAXRANK","biocontext":"TAXRANK","bioportal":"TAXRANK","fairsharing":"FAIRsharing.p1sejz","obofoundry":"taxrank","ols":"taxrank","ontobee":"TAXRANK","prefixcommons":"taxrank","wikidata.entity":"Q81661813"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"24267744","doi":"10.1186/2041-1480-4-34","pmc":"PMC4177199","title":"The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes","year":2013}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group.","examples":["TAXRANK:0000001"],"homepage":"https://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary","keywords":["obo"],"name":"Taxonomic rank vocabulary","pattern":"^TAXRANK:\\d+$","prefix":"taxrank","prefix_synonyms":["taxonomic_rank"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/taxrank:$1"}],"xrefs":{"bioportal":"1419"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/taxrank.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/taxrank.obo"}],"contact":{"email":"balhoff@renci.org","github":"balhoff","name":"Jim Balhoff","orcid":"0000-0002-8688-6599"},"description":"A vocabulary of taxonomic ranks (species, family, phylum, etc)","domain":"organisms","homepage":"https://github.com/phenoscape/taxrank","license":{"name":"CC0 1.0","url":"http://creativecommons.org/publicdomain/zero/1.0/"},"name":"Taxonomic rank vocabulary","preferred_prefix":"TAXRANK","prefix":"taxrank","publications":[{"doi":"10.1186/2041-1480-4-34","title":"The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes"}],"repository":"https://github.com/phenoscape/taxrank","status":"active"},"bioportal":{"contact":{"email":"peteremidford@yahoo.com","name":"Peter Midford"},"description":"A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms.","homepage":"https://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary","license":{"name":"CC0-1.0"},"name":"Taxonomic Rank Vocabulary","prefix":"TAXRANK","version":"unknown"},"ecoportal":null,"agroportal":{"contact":{"email":"peter.midford@gmail.com","name":"Peter Midford"},"description":"A vocabulary of taxonomic ranks developed as part of Phenoscape's Vertebrate Taxonomy Ontology. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms.","extras":{"example_uri":"http://purl.obolibrary.org/obo/TAXRANK_0000034"},"license":{"name":"CC0-1.0"},"name":"Taxonomic Rank Ontology","prefix":"TAXRANK"},"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/taxrank.owl"}],"description":"A vocabulary of taxonomic ranks (species, family, phylum, etc)","extras":{"version.iri":"http://purl.obolibrary.org/obo/taxrank/releases/2025-09-24/taxrank.owl"},"homepage":"https://github.com/phenoscape/taxrank","name":"Taxonomic rank vocabulary","prefix":"taxrank","tracker":"https://github.com/phenoscape/taxrank/issues","version":"2025-09-24"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/TAXRANK/13/taxrank.owl"}],"description":"A vocabulary of taxonomic ranks (species, family, phylum, etc)","homepage":"https://github.com/phenoscape/taxrank","name":"Taxonomic rank vocabulary","prefix":"TAXRANK"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Taxonomic rank vocabulary","prefix":"TAXRANK"},"cheminf":null,"fairsharing":{"contact":{"email":"peteremidford@yahoo.com","name":"Peter E. Midford","orcid":"0000-0001-6512-3296"},"description":"This is a vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Each term contains cross reference links to the resources that use the terms. Consistent with its intended use as a vocabulary, there is no relation specifying an ordering of the rank terms. Likewise, all terms are directly descended from the term 'taxonomic rank' (TAXRANK:0000000).","homepage":"https://github.com/phenoscape/taxrank","keywords":["Life Science","Taxonomy","Taxonomic classification"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Taxonomic Rank Vocabulary","prefix":"FAIRsharing.p1sejz","short_names":["TAXRANK"]},"biocontext":{"prefix":"TAXRANK","uri_format":"http://purl.obolibrary.org/obo/TAXRANK_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tcb":{"prefix":"tcb","name":"Tick Cell Biobank","description":"A cell line collection","pattern":"^\\d+$","uri_format":"https://www.pirbright.ac.uk/node/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.pirbright.ac.uk/tick-cell-lines-views-page","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2966","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tccd":{"prefix":"tccd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":true,"mappings":{"prefixcommons":"tccd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":"This resource doesn't exist on the web anymore","contributor":null,"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle","examples":["TP53"],"homepage":"http://www.itb.cnr.it/cellcycle","keywords":["gene","protein","pathway"],"name":"The Cell Cycle DB","pattern":"^[A-Z,0-9]+$","prefix":"tccd","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tccd:$1"}],"uri_format":"http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1"},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tcdb":{"prefix":"tcdb","name":"Transporter Classification Database","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.tcdb.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TCDB","edam":"2756","go":"TC","miriam":"tcdb","n2t":"tcdb","pathguide":"104","prefixcommons":"tcdb","uniprot":"DB-0135","wikidata":"P7260"},"synonyms":["TC"],"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"33170213","doi":"10.1093/nar/gkaa1004","pmc":"PMC7778945","title":"The Transporter Classification Database (TCDB): 2021 update","year":2021},{"pubmed":"26546518","doi":"10.1093/nar/gkv1103","pmc":"PMC4702804","title":"The Transporter Classification Database (TCDB): recent advances","year":2015},{"pubmed":"24225317","doi":"10.1093/nar/gkt1097","pmc":"PMC3964967","title":"The transporter classification database","year":2013},{"pubmed":"19022853","doi":"10.1093/nar/gkn862","pmc":"PMC2686586","title":"The Transporter Classification Database: recent advances","year":2008},{"pubmed":"16381841","doi":"10.1093/nar/gkj001","pmc":"PMC1334385","title":"TCDB: the Transporter Classification Database for membrane transport protein analyses and information","year":2006},{"pubmed":"16381841","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"33170213","doi":"10.1093/nar/gkaa1004","pmc":null,"title":null,"year":null},{"pubmed":"16381841","doi":null,"pmc":null,"title":null,"year":null},{"pubmed":"33170213","doi":"10.1093/nar/gkaa1004","pmc":null,"title":null,"year":null}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.","examples":["5.A.1.1.1"],"extras":{"miriam_id":"00000040","namespaceEmbeddedInLui":false},"homepage":"http://www.tcdb.org/","name":"Transport Classification Database","pattern":"^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$","prefix":"tcdb","status":"active","uri_format":"http://www.tcdb.org/search/result.php?tc=$1"},"n2t":{"description":"The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.","examples":["5.A.1.1.1"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://www.tcdb.org/","name":"TCDB","pattern":"^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$","prefix":"tcdb","uri_format":"http://www.tcdb.org/search/result.php?tc=$1"},"prefixcommons":{"description":"TCDB is a curated database of factual information from over 10,000 published references; it contains about 5,600 unique protein sequences that are classified into over 600 transporter families based on the TC-system.","examples":["5.A.1.1.1"],"homepage":"http://www.tcdb.org/","keywords":["protein","structure"],"name":"Transport Classification Database","pattern":"^\\d+\\.[A-Z]\\.\\d+\\.\\d+\\.\\d+$","prefix":"tcdb","prefix_synonyms":["tc"],"providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tcdb:$1"}],"publications":[{"pubmed":"16381841"}],"uri_format":"http://www.tcdb.org/search/result.php?tc=$1"},"wikidata":{"description":"classifies transport proteins similar to how EC classifies enzymes","examples":["1.A.1","2.A.1.1.28","3.A.3"],"homepage":"https://www.tcdb.org","name":"Transporter Classification Database ID","pattern":"^\\d|(\\d\\.[A-Z](\\.(\\d{1,3}){0,3}))$","prefix":"P7260","uri_format":"http://www.tcdb.org/search/result.php?tc=$1"},"wikidata_entity":null,"go":{"homepage":"http://www.tcdb.org/","name":"Transport Protein Database","prefix":"TC","uri_format":"http://www.tcdb.org/tcdb/index.php?tc=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":{"homepage":"https://www.tcdb.org/","keywords":["Protein family/group databases"],"name":"Transport Classification Database","prefix":"DB-0135","publications":[{"doi":"10.1093/nar/gkaa1004","pubmed":"33170213"}],"short_names":["TCDB"],"uri_format":"https://www.tcdb.org/search/result.php?tc=$1"},"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TCDB","uri_format":"http://identifiers.org/tcdb/$1"},"edam":{"description":"Identifier of a membrane transport proteins from the transport classification database (TCDB).","name":"TC","prefix":"2756"},"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://www.tcdb.org/","name":"Transporter Classification Database","prefix":"104","short_names":["TCDB"]},"tib":null},"tctr":{"prefix":"tctr","name":"Thai Clinical Trials Registry","description":"The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)","pattern":"^TCTR\\d+$","uri_format":"https://www.thaiclinicaltrials.org/show/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.thaiclinicaltrials.org","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"TCTR20230429001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tdwg.abcd":{"prefix":"tdwg.abcd","name":"Access to Biological Collection Data Schema","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accession","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"tdwg","provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"abcd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://raw.githubusercontent.com/tdwg/abcd/master/ontology/abcd_concepts.owl"}],"description":"The base ontology of the ABCD Standard.","homepage":"https://www.tdwg.org/standards/abcd/","keywords":["FAIR Data Spaces","ESS","life sciences, biology"],"name":"ABCD Base Ontology","prefix":"abcd","tracker":"https://github.com/tdwg/abcd/issues"}},"tdwg.format":{"prefix":"tdwg.format","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"e001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"format"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"http://rs.tdwg.org/format.ttl"}],"description":"Controlled vocabulary for the Dublin Core term format","homepage":"http://rs.tdwg.org/format.htm","keywords":["FAIR Data Spaces","life sciences, biology"],"name":"format controlled vocabulary","prefix":"format","uri_format":"http://rs.tdwg.org/format/$1"}},"tdwg.taxonrank":{"prefix":"tdwg.taxonrank","name":"TDWG Taxon Rank LSID Ontology","description":"Ontology describing a controlled vocabulary for taxon ranks.","pattern":null,"uri_format":"http://rs.tdwg.org/ontology/voc/TaxonRank#$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/tdwg/ontology","repository":"https://github.com/tdwg/ontology","contact":{"name":"Roger Hyam","orcid":"0000-0003-4581-1379","email":"rhyam@rbge.org.uk","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"InfragenericTaxon","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":"tdwg","provides":null,"download_owl":"https://tdwg.github.io/ontology/ontology/voc/TaxonRank.rdf","download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":1321,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tdwg.vms":{"prefix":"tdwg.vms","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"vms"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":true,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/tdwg/vocab/master/vms/maintenance-specification.ttl"}],"description":"The TDWG Vocabulary Maintenance Standard consists of a single document: the Vocabulary Maintenance Specification.","homepage":"https://www.tdwg.org/standards/vms/","keywords":["FAIR Data Spaces","life sciences, biology"],"name":"Vocabulary Maintenance Standard","prefix":"vms","tracker":"https://github.com/tdwg/vocab/tree/master/vms","uri_format":"http://www.tdwg.org/standards/642$1"}},"te":{"prefix":"te","name":"Terminologia Embryologica","description":"The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ifaa.unifr.ch/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"E5.11.2.0.0.0.4","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1693"},"synonyms":null,"keywords":null,"domain":null,"references":["https://en.wikipedia.org/wiki/Terminologia_Embryologica"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"standardized list of words used in the description of human embryologic and fetal structures","name":"Terminologia Embryologica","prefix":"P1693"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tfclass":{"prefix":"tfclass","name":"Classification of Transcription Factors in Mammalia","description":"TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..","pattern":null,"uri_format":"http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"http://tfclass.bioinf.med.uni-goettingen.de","repository":null,"contact":{"name":"Edgar Wingender","orcid":"0000-0002-7729-8453","email":"edgar.wingender@edgar-wingender.de","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"2.1.1","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"fairsharing":"FAIRsharing.XykycZ","go":"TFClass","pathguide":"666"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"29087517","doi":"10.1093/nar/gkx987","pmc":"PMC5753292","title":"TFClass: expanding the classification of human transcription factors to their mammalian orthologs","year":2018},{"pubmed":"29087517","doi":"10.1093/nar/gkx987","pmc":null,"title":"TFClass: expanding the classification of human transcription factors to their mammalian orthologs","year":2017}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://tfclass.bioinf.med.uni-goettingen.de/","name":"TFClass is a resource for the classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains","prefix":"TFClass","prefix_synonyms":["TFCLASS_FAMILY","tfclass"],"uri_format":"http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":{"description":"TFClass is a resource that classifies eukaryotic transcription factors (TFs) according to their DNA-binding domains. Combining information from different resources, manually checking the retrieved mammalian TF sequences and applying extensive phylogenetic analyses, >39,000 TFs from up to 41 mammalian species were assigned to the Superclasses, Classes, Families and Subfamilies of TFClass. TFClass provides corresponding sequence collections in FASTA format; sequence logos and phylogenetic trees at different classification levels; predicted TF binding sites for human, mouse, dog and cow genomes; and links to several external databases.","homepage":"http://tfclass.bioinf.med.uni-goettingen.de/","keywords":["Phylogenetics","Transcriptomics","Bioinformatics","Expression data","Transcription factor binding site prediction","binding","Transcription Factor","binding site"],"name":"Transcription Factor Class","prefix":"FAIRsharing.XykycZ","publications":[{"doi":"10.1093/nar/gkx987","pubmed":"29087517","title":"TFClass: expanding the classification of human transcription factors to their mammalian orthologs","url":"http://doi.org/10.1093/nar/gkx987","year":2017}],"short_names":["TFClass"]},"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":{"homepage":"http://tfclass.bioinf.med.uni-goettingen.de/tfclass","name":"Classification of Human Transcription Factors and Mouse Orthologs","prefix":"666","short_names":["TFClass"]},"tib":null},"tfsco":{"prefix":"tfsco","name":"Thin-film Solar Cells Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/nomad-hzb/autoperosol","repository":"https://github.com/nomad-hzb/autoperosol","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"00000001","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"tfsco"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"Domain ontology for thin-film solar cells and related tandem solar cells. Contains relevant terms and concepts from BFO, IAO, UO, PATO, OBI, CHMO.","extras":{"version.iri":"https://purl.archive.org/tfsco/release/v_1_2"},"keywords":["FAIRmat","material science","physics","mechanical engineering, energy technology"],"name":"Ontology for thin-film solar cells (TFSCO)","prefix":"tfsco","tracker":"https://github.com/nomad-hzb/autoperosol/issues","uri_format":"https://purl.archive.org/tfsco/TFSCO_$1"}},"tgd":{"prefix":"tgd","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"biocontext":"TGD","go":"TGD","miriam":"tgd","n2t":"tgd"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":{"description":"The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.","examples":["TTHERM_00648910"],"extras":{"miriam_id":"00000313","namespaceEmbeddedInLui":false},"homepage":"http://ciliate.org/index.php/","name":"Tetrahymena Genome Database","pattern":"^TTHERM\\_\\d+$","prefix":"tgd","status":"active","uri_format":"http://ciliate.org/index.php/feature/details/$1"},"n2t":{"description":"The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.","examples":["TTHERM_00648910"],"extras":{"namespaceEmbeddedInLui":false},"homepage":"http://ciliate.org/index.php/","name":"TGD at Stanford University","pattern":"^TTHERM\\_\\d+$","prefix":"tgd","uri_format":"http://ciliate.org/index.php/feature/details/$1"},"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":{"homepage":"http://www.ciliate.org/","name":"Tetrahymena Genome Database","prefix":"TGD"},"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":{"prefix":"TGD","uri_format":"http://identifiers.org/tgd/$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tgma":{"prefix":"tgma","name":null,"description":null,"pattern":"^\\d{7}$","uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":{"name":"Pantelis Topalis","orcid":"0000-0002-1635-4810","email":"topalis@imbb.forth.gr","github":null},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0000984","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":"http://purl.obolibrary.org/obo/tgma.obo","download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"aberowl":"TGMA","biocontext":"TGMA","bioportal":"TGMA","fairsharing":"FAIRsharing.dqnfkg","obofoundry":"tgma","ols":"tgma","ontobee":"TGMA","prefixcommons":"tgma"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":[{"pubmed":"18237287","doi":"10.1111/j.1365-2583.2008.00781.x","pmc":null,"title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","year":2008},{"pubmed":"18237287","doi":"10.1111/j.1365-2583.2008.00781.x","pmc":null,"title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","year":2008},{"pubmed":"18237287","doi":"10.1111/j.1365-2583.2008.00781.x","pmc":null,"title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","year":2008}],"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":{"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","examples":["TGMA_0001525"],"homepage":"http://www.anobase.org","keywords":["obo","anatomy","mosquito"],"name":"Mosquito gross anatomy","pattern":"^TGMA_\\d{7}$","prefix":"tgma","providers":[{"code":"bio2rdf","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","name":"Bio2RDF","uri_format":"http://bio2rdf.org/tgma:$1"}],"xrefs":{"bioportal":"1030"}},"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tgma.owl"},{"type":"obo","url":"http://purl.obolibrary.org/obo/tgma.obo"}],"contact":{"email":"topalis@imbb.forth.gr","name":"Pantelis Topalis"},"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","domain":"anatomy and development","homepage":"https://www.vectorbase.org/ontology-browser","license":{"name":"CC0 1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Mosquito gross anatomy ontology","preferred_prefix":"TGMA","prefix":"tgma","repository":"https://github.com/VEuPathDB-ontology/TGMA","status":"inactive","taxon":{"identifier":"44484","name":"Anopheles","prefix":"NCBITaxon"}},"bioportal":{"contact":{"email":"louis@imbb.forth.gr","name":"C. Louis"},"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","homepage":"http://www.anobase.org","name":"Mosquito Gross Anatomy Ontology","prefix":"TGMA","version":"releases/2013-06-03"},"ecoportal":null,"agroportal":null,"cropoct":null,"ols":{"artifacts":[{"type":"owl","url":"http://purl.obolibrary.org/obo/tgma.owl"}],"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","extras":{"version.iri":"http://purl.obolibrary.org/obo/tgma/releases/2013-06-03/tgma.owl"},"homepage":"https://www.vectorbase.org/ontology-browser","name":"Mosquito gross anatomy ontology","prefix":"tgma","version":"2013-06-03"},"aberowl":{"artifacts":[{"type":"owl","url":"http://aber-owl.net/media/ontologies/TGMA/18/tgma.owl"}],"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","homepage":"https://www.vectorbase.org/ontology-browser","name":"Mosquito gross anatomy ontology","prefix":"TGMA"},"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":{"keywords":["obo","ontology"],"name":"Mosquito gross anatomy ontology","prefix":"TGMA"},"cheminf":null,"fairsharing":{"description":"A structured controlled vocabulary of the anatomy of mosquitoes.","homepage":"http://purl.obolibrary.org/obo/tgma.owl","keywords":["Life Science","Anatomy"],"license":{"name":"CC0-1.0","url":"https://creativecommons.org/publicdomain/zero/1.0/"},"name":"Mosquito gross anatomy","prefix":"FAIRsharing.dqnfkg","publications":[{"doi":"10.1111/j.1365-2583.2008.00781.x","pubmed":"18237287","title":"Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase","url":"http://doi.org/10.1111/j.1365-2583.2008.00781.x","year":2008}],"repository":"https://github.com/VEuPathDB-ontology/TGMA","short_names":["TGMA"]},"biocontext":{"prefix":"TGMA","uri_format":"http://purl.obolibrary.org/obo/TGMA_$1"},"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"th":{"prefix":"th","name":"Terminologia Histologica","description":"The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]","pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://ifaa.unifr.ch/","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"H3.03.00.0.00007","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"wikidata":"P1694"},"synonyms":null,"keywords":["biology","cytology","histology","life sciences"],"domain":null,"references":["https://en.wikipedia.org/wiki/Terminologia_Histologica"],"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":{"description":"controlled vocabulary for use in cytology and histology","examples":["H2.00.06.1.00001","H2.00.06.2.00001","H3.09.02.0.02001"],"name":"Terminologia Histologica","pattern":"^H\\d\\.\\d{2}\\.\\d{2}\\.\\d\\.\\d{5}$","prefix":"P1694"},"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"theiler":{"prefix":"theiler","name":"Theiler Stage","description":"Theiler stages (TS) define mouse development by a set of morphological criteria ([Theiler, 1989](https://doi.org/10.1007/978-3-642-88418-4)). This staging scheme is used because embryos at the same gestational age can have developed at different rates and therefore exhibit different morphological characteristics. Theiler stages may in some cases correspond to a single gestation age, but more often cover a range of ages. (from [https://www.informatics.jax.org/glossary/theiler](https://www.informatics.jax.org/glossary/theiler))","pattern":"^\\d+[a-d]?$","uri_format":"https://www.emouseatlas.org/emap/ema/DAOAnatomyJSP/anatomy.html?stage=TS$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":[{"code":"legacy","name":"Legacy URL at UNSW","description":"Legacy URL at UNSW","homepage":"https://embryology.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages","uri_format":"https://embryology.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages#Theiler_Stage_$1","first_party":null,"publications":null,"example":null,"status":null},{"code":"legacy2","name":"Legacy URL at UNSW","description":"Legacy URL at UNSW","homepage":"http://php.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages","uri_format":"http://php.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages#Theiler_Stage_$1","first_party":null,"publications":null,"example":null,"status":null}],"homepage":"https://embryology.med.unsw.edu.au/embryology/index.php?title=Mouse_Stages","repository":null,"contact":{"name":"Terry Hayamizu","orcid":"0000-0002-0956-8634","email":"Terry.Hayamizu@jax.org","github":"tfhayamizu"},"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"23","example_extras":["10b"],"example_decoys":["10e"],"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":["thielerstage"],"keywords":null,"domain":null,"references":["https://www.emouseatlas.org/emap/ema/theiler_stages/StageDefinition/stagedefinition.html"],"publications":null,"appears_in":["emaps","mmusdv"],"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":747,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"thermofisher":{"prefix":"thermofisher","name":"Thermo Fisher Scientific","description":"ThermoFisher is a life sciences supply vendor.","pattern":"^\\w+$","uri_format":"https://www.thermofisher.com/antibody/product/$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://www.thermofisher.com","repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"OSR00185W","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":null,"synonyms":null,"keywords":["biology","chemistry","life sciences","vendor"],"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":null},"tib.bk":{"prefix":"tib.bk","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"0","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"bk"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The (Dutch) Basic Classification (nl Nederlandse basisclassificatie), BK or NBC is a hierarchical classification system developed by Dutch libraries specifically for scientific works. The classification system was introduced at the end of the 1980s under the direction of the Royal Library of the Netherlands and has been in use since 1990. Since then it has been continually revised. The BK is mainly used in the Netherlands and in the Common Library Network (GBV).","homepage":"http://bartoc.org/en/node/18785","keywords":["Digital Planning and Construction","FID BAUdigital","FID move","NFDI4ING","ESS","earth sciences"],"name":"Basisklassifikation","prefix":"bk","uri_format":"http://uri.gbv.de/terminology/bk/$1"}},"tib.bo":{"prefix":"tib.bo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AreaNetwork","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"bo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://git.onem2m.org/MAS/BaseOntology/-/raw/master/base_ontology.owl"}],"description":"This file contains the Base Ontology of oneM2M as specified in TS-0012","extras":{"version.iri":"https://git.onem2m.org/MAS/BaseOntology/raw/3_6_0/base_ontology.owl"},"homepage":"https://git.onem2m.org/MAS/BaseOntology","keywords":["NFDI4ING","engineering"],"name":"Base Ontology","prefix":"bo","uri_format":"https://git.onem2m.org/MAS/BaseOntology/raw/master/base_ontology.owl#$1"}},"tib.cgo":{"prefix":"tib.cgo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AbioticStressTrait","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"cgo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://ontology.tno.nl/ddings/Greenhouse_ontology_v1.3.ttl"}],"description":"This ontology describes concepts related to greenhouses. It mainly describes Dutch greenhouses, but can also be applied to greenhouses outside of The Netherlands. The ontology describes multiple aspects of the domain of greenhouses.","extras":{"version.iri":"https://www.tno.nl/agrifood/ontology/common-greenhouse-ontology#1.3"},"homepage":"https://gitlab.com/ddings/common-greenhouse-ontology","keywords":["ESS","chemical and environmental engineering","horticulture","earth sciences"],"name":"Common Greenhouse Ontology","prefix":"cgo","uri_format":"https://www.tno.nl/agrifood/ontology/common-greenhouse-ontology#$1"}},"tib.dot":{"prefix":"tib.dot","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Causation","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"dot"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://alhakam.github.io/dot/ontology.ttl"}],"description":"The Damage Topology Ontology (DOT) allows the definition of damage representations and their relations with other damages and affected construction components. The ontology supports a generic damage modeling approach and therefore could be applied for any type of degradation as well as for any construction type (e.g. buildings or bridges). Damage representations can be modeled either as damaged areas (dot:DamageArea) or elementary damage elements (dot:DamageElement). Thereby, instances of dot:DamageElement should be aggregated in a dot:DamageArea, however significant damages e.g. large cracks could be modelled as dot:DamageElement without dot:DamageArea. For grouping multiple coherent damages, a damage pattern could be defined by using dot:DamagePattern as third type for damage representation. Besides the topological damage classes, damage can also be categorized acording to a certain damage type using subclasses of dot:ClassifiedDamage as defined in extensions of DOT. A division between structural and non-structural damage is made by using the dot:StructuralDamage or dot:Defect classes. In addition to the topology, damage documentation that is commonly created during inspections and damage assessment can be linked to the damages as well as to the damaged components.","extras":{"version.iri":"https://w3id.org/dot/0.8"},"homepage":"https://alhakam.github.io/dot","keywords":["NFDI4ING","engineering"],"name":"Damage Topology Ontology","prefix":"dot","uri_format":"https://w3id.org/dot#$1"}},"tib.dr":{"prefix":"tib.dr","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Application","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"dr"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/tibonto/dr/master/DigitalReference.ttl"}],"description":"Holistic Ontology for semiconductor manufacturing and development, products and systems containing semiconductors and connected supply chains.","homepage":"https://github.com/tibonto/dr","keywords":["NFDI4ING","CoyPu","electrical engineering","economics"],"name":"Digital Reference","prefix":"dr","tracker":"https://github.com/tibonto/dr/issues","uri_format":"http://www.w3id.org/ecsel-dr-SO#$1"}},"tib.fto":{"prefix":"tib.fto","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Agent","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"fto"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/Data-Semantics-Laboratory/Modular-Ontology-Modeling-for-Food-Supply-Chains/master/food-traceability-schema.ttl"}],"description":"Modular Ontology Modeling for Food Supply Chains.","homepage":"https://github.com/Data-Semantics-Laboratory/Modular-Ontology-Modeling-for-Food-Supply-Chains","keywords":["CoyPu","economics"],"name":"Modular Ontology Modeling for Food Supply Chains","prefix":"fto","tracker":"https://github.com/Data-Semantics-Laboratory/Modular-Ontology-Modeling-for-Food-Supply-Chains/issues","uri_format":"http://dase.cs.ksu.edu/ontology/food-traceability#$1"}},"tib.gpo":{"prefix":"tib.gpo","name":"General Process Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/General-Process-Ontology/ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"01cd2578_8730_4ac9_a555_9112728ea939","example_extras":null,"example_decoys":null,"license":"CC-BY-4.0","version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"gpo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/General-Process-Ontology/ontology/master/GPO.ttl"}],"description":"Ontology to model processes","homepage":"https://github.com/General-Process-Ontology/ontology","keywords":["NFDI4ING","engineering"],"name":"General Process Ontology (GPO)","prefix":"gpo","uri_format":"https://gpo.ontology.link/GPO_$1"}},"tib.hpont":{"prefix":"tib.hpont","name":"Heat Pump Ontology","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/react2020/REACT-ONTOLOGY","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"HeatPumpOperatingMode","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"hpont"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://react2020.github.io/REACT-ONTOLOGY/HPOnt/ontology/ontology.ttl"}],"description":"The Heat Pump Ontology (HPOnt) aims to formalize and represent all the relevant information of Heat Pumps. The HPOnt has been developed as part of the REACT project which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 824395.","homepage":"https://react2020.github.io/REACT-ONTOLOGY/HPOnt/index-en.html","keywords":["NFDI4ING","engineering"],"name":"The Heat Pump Ontology (HPOnt).","prefix":"hpont","uri_format":"https://w3id.org/hpont#$1"}},"tib.ifc":{"prefix":"tib.ifc","name":"Industrial Foundational Classes","description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"IfcAbsorbedDoseMeasure","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":"https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL/ontology.ttl","download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"ifc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"xml","url":"https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL/ontology.xml"}],"description":"OWL ontology for the IFC conceptual data schema and exchange file format for Building Information Model (BIM) data","homepage":"https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL/index.html","keywords":["Digital Planning and Construction","FID BAUdigital","NFDI4ING","civil engineering","architecture","computer science"],"name":"IFC4_ADD2_TC1","prefix":"ifc","uri_format":"https://standards.buildingsmart.org/IFC/DEV/IFC4/ADD2_TC1/OWL#$1"}},"tib.io":{"prefix":"tib.io","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"InformationObject","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"io"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"xml","url":"https://bimerr.iot.linkeddata.es/def/information-objects/ontology.xml"}],"description":"An ontology for the description of information objects.","homepage":"https://bimerr.iot.linkeddata.es/def/information-objects/","keywords":["Digital Planning and Construction","FID BAUdigital","NFDI4ING","computer science"],"name":"Information Objects Ontology","prefix":"io","uri_format":"http://bimerr.iot.linkeddata.es/def/information-objects#$1"}},"tib.ioc":{"prefix":"tib.ioc","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Actor","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"ioc"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://internet-of-construction.github.io/IoC-Process-Ontology/ontology.ttl"}],"description":"The Internet of Construction Ontology (IoC) construction process ontology is intended to represent a comprehensive solution of how processes in the construction industry can be modelled. Due to the iterative nature of creating an ontology, the construction process ontology presented here can at best be considered a working state at the time of publication. Our approach emphasizes the simplest and most comprehensive mapping possible, which is only extended based on insights from practical use when otherwise compelling limitations in usability and applicability arise. Thus, the extension and refinement of the developed construction process ontology strongly depends on the integration of further areas of the construction value chain and the connection of further domain ontologies.","homepage":"https://ip.pages.rwth-aachen.de/ioc/core/","keywords":["NFDI4ING","Digital Planning and Construction","FID BAUdigital","civil engineering"],"name":"IOC: Internet of Construction Ontology","prefix":"ioc","uri_format":"http://w3id.org/ioc#$1"}},"tib.linsearch":{"prefix":"tib.linsearch","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":"https://github.com/TIBHannover/annif_automated_indexing_at_tib","repository":"https://github.com/TIBHannover/annif_automated_indexing_at_tib","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"arc","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"linsearch"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/TIBHannover/annif_automated_indexing_at_tib/main/vocab/LinSearch/linsearch20230105.ttl"}],"description":"Fächer für die LinSearch-Fachzuordnung","extras":{"version.iri":"https://purl.org/linsearch/version/20230105"},"keywords":["Miscellaneous","computer science"],"name":"Fachsystematik LinSearch","prefix":"linsearch","tracker":"https://github.com/TIBHannover/annif_automated_indexing_at_tib/issues","uri_format":"https://purl.org/linsearch/$1"}},"tib.lis":{"prefix":"tib.lis","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Activity","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"lis"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"The Industrial Data Ontology is an upper ontology for industrial data, inspired by the ISO 15926-2 data model and Basic Formal Ontology.","extras":{"version.iri":"http://rds.posccaesar.org/ontology/lis14/ont/core/4.0"},"homepage":"https://rds.posccaesar.org/ontology/lis14/ont/core/","keywords":["NFDI4ING","engineering"],"name":"Industrial Data Ontology","prefix":"lis","uri_format":"http://rds.posccaesar.org/ontology/lis14/rdl/$1"}},"tib.mat":{"prefix":"tib.mat","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"Accesories","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mat"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://bimerr.iot.linkeddata.es/def/material-properties/ontology.ttl"}],"description":"The material properties ontology provides the vocabulary to describe the composition of building elements.","homepage":"https://bimerr.iot.linkeddata.es/def/material-properties/","keywords":["FID BAUdigital","Digital Planning and Construction","NFDI4ING","engineering"],"name":"Material properties ontology","prefix":"mat","tracker":"https://github.com/oeg-upm/bimerr-material-properties/issues","uri_format":"http://bimerr.iot.linkeddata.es/def/material-properties#$1"}},"tib.mdo":{"prefix":"tib.mdo","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":"https://github.com/LiUSemWeb/Materials-Design-Ontology","contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":null,"example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mdo"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":true,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"owl","url":"https://liusemweb.github.io/mdo/full/1.0/mdo-full.owl"}],"description":"The Materials Design Ontology is designed to enable semantic query and integrated query over multiple databases. By generating mappings between MDO and the schemas of materials databases, we can create MDO-enabled query interfaces. The querying can occur, for instance, via MDO-based query expansion, MDO-based mediation or through MDO-enabled data warehouses.","extras":{"version.iri":"https://w3id.org/mdo/full/1.0/"},"homepage":"https://liusemweb.github.io/mdo/full/1.0/index.html#namespaces","keywords":["NFDI4ING","material science"],"name":"Materials Design Ontology - Full","prefix":"mdo","tracker":"https://github.com/LiUSemWeb/Materials-Design-Ontology/issues","uri_format":"https://w3id.org/mdo/$1"}},"tib.mdv":{"prefix":"tib.mdv","name":null,"description":null,"pattern":null,"uri_format":"https://data.nist.gov/od/dm/nmrr/vocab/?tema=$1","uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"953","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":"https://data.nist.gov/od/ds/67C783D4BA814C8EE05324570681708A1899/NMRRVocab20210726.rdf","download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mdv"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"A version of the Materials Data Vocabulary structured as Simple Knowledge Organization System (SKOS). The XML was originally created by the TemaTres software. This vocabulary describes the applicability to material science of records in the NIST Materials Resource Registry (NMRR - https://materials.registry.nist.gov/). The NMRR allows for the registration of materials resources, bridging the gap between existing resources and the end users. The NMRR functions as a node in a federated system, making the registered information available for research to the materials community. This is being developed at the National Institute of Standards and Technology and is made available to solicit comments from the Material Science community. (An Excel version of the file is also included in the distributions for ease of use.) Please cite this resource as: Medina-Smith, Andrea; Becker, Chandler (2017), Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary , National Institute of Standards and Technology, https://doi.org/10.18434/T4/1435037","homepage":"https://data.nist.gov/od/id/67C783D4BA814C8EE05324570681708A1899","keywords":["NFDI4ING","material science"],"name":"Simple Knowledge Organization System (SKOS) version of Materials Data Vocabulary","prefix":"mdv","uri_format":"https://data.nist.gov/od/dm/nmrr/vocab$1"}},"tib.meth":{"prefix":"tib.meth","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"acceleratormassspectrometry","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"meth"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/SArndt-TIB/Vocabulary/refs/heads/master/geochemistry/GeochemAnalyticalMethod.ttl"}],"description":"This concept scheme contains skos concepts for analysis methods used to produce observation results with information about the physical properties, chemical or isotopic composition, crystallography, or molecular structure of material samples. Based on spreadsheet compilation of method vocabularies from Geo.X, GEOROC, PetDB and OSIRIS-REx. Definitions added and updated based on web research, and SKOS serialization by S.M. Richard. Note that although there are high-level method categories for 'Physical property measurements' and the 'Bioanalytical method', these are placeholders and only include a few examples that are relevant to analytical methods in geo- or cosmochemistry.","homepage":"https://amds-ldeo.github.io/Vocabulary/geochemistry/html/GeochemAnalyticalMethod.html","keywords":["ESS","earth sciences"],"name":"Analytical methods for geochemistry","prefix":"meth","tracker":"https://github.com/amds-ldeo/Vocabulary/issues","uri_format":"https://w3id.org/geochem/1.0/analyticalmethod/$1"}},"tib.mt":{"prefix":"tib.mt","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"accesibility-information-for-vehicles","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"mt"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"description":"Controlled vocabulary for the classification of the theme for a mobility dataset.","extras":{"version.iri":"https://w3id.org/mobilitydcat-ap/mobility-theme/1.1.1"},"homepage":"https://w3id.org/mobilitydcat-ap/mobility-theme","keywords":["FID move","NFDI4ING","traffic engineering"],"name":"Mobility Theme","prefix":"mt","tracker":"https://github.com/mobilityDCAT-AP/controlled-vocabularies/issues","uri_format":"https://w3id.org/mobilitydcat-ap/mobility-theme/$1"}},"tib.n0":{"prefix":"tib.n0","name":null,"description":null,"pattern":null,"uri_format":null,"uri_format_resolvable":null,"rdf_uri_format":null,"providers":null,"homepage":null,"repository":null,"contact":null,"contact_extras":null,"contact_group_email":null,"contact_page":null,"owners":null,"example":"AnalogSignal","example_extras":null,"example_decoys":null,"license":null,"version":null,"part_of":null,"part_of_database":null,"provides":null,"download_owl":null,"download_obo":null,"download_json":null,"download_rdf":null,"download_skos":null,"download_jskos":null,"banana":null,"banana_peel":null,"deprecated":null,"mappings":{"tib":"n0"},"synonyms":null,"keywords":null,"domain":null,"references":null,"publications":null,"appears_in":null,"depends_on":null,"namespace_in_lui":null,"no_own_terms":null,"comment":null,"contributor":null,"contributor_extras":null,"reviewer":null,"reviewer_extras":null,"proprietary":null,"has_canonical":null,"preferred_prefix":null,"mastodon":null,"github_request_issue":null,"logo":null,"miriam":null,"n2t":null,"prefixcommons":null,"wikidata":null,"wikidata_entity":null,"go":null,"obofoundry":null,"bioportal":null,"ecoportal":null,"agroportal":null,"cropoct":null,"ols":null,"aberowl":null,"ncbi":null,"uniprot":null,"biolink":null,"cellosaurus":null,"ontobee":null,"cheminf":null,"fairsharing":null,"biocontext":null,"edam":null,"re3data":null,"hl7":null,"bartoc":null,"rrid":null,"lov":null,"zazuko":null,"togoid":null,"integbio":null,"pathguide":null,"tib":{"artifacts":[{"type":"rdf","url":"https://raw.githubusercontent.com/AudioCommons/ac-ontology/master/aco.ttl"}],"description":"The Audio Commons Ontology has been created in the context of the European project [Audio Commons](https://www.audiocommons.org/), which were aimed at favouring sharing and reuse of audio content (both of musical and non-musical nature), specially using [Creative Commons](https://creativecommons.org/) licenses.\n\nIt is designed specifically to integrate access to multiple heterogeneously structured audio content providers. In particular the following ones have been considered in the project:\n- [Freesound](https://freesound.org/), a collaborative database of Creative Commons Licensed sounds;\n- [Jamendo](https://www.jamendo.com/), a music website for independent artists;\n- [Europeana Sounds](https://www.eusounds.eu/), a European project collecting and sharing data from several archives of sounds and sound-related media;\n- [Internet Archive](https://archive.org/), a non-profit library of millions of freely accessible media contents.\n\n### The base model\n