appears_in: []
contact:
  email: troy_pells@yahoo.ca
  github: pellst
  name: Troy Pells
  orcid: 0000-0002-2340-5356
depends_on: []
deprecated: false
description: Xenbase is the model organism database for Xenopus laevis and X. (Silurana)
  tropicalis. It contains genomic, development data and community information for
  Xenopus research. it includes gene expression patterns that incorporates image data
  from the literature, large scale screens and community submissions.
example: XB-GENE-922462
example_extras: []
homepage: https://www.xenbase.org/
keywords:
- anatomy
- cell biology
- developmental biology
- expression
- functional genomics
- genetics
- genome
- genomics
- proteomics
logo: https://www.xenbase.org/xenbase/img/Xenbase-Logo-Small.png
mappings:
  biocontext: Xenbase
  biolink: Xenbase
  edam: '2738'
  fairsharing: FAIRsharing.jrv6wj
  go: Xenbase
  miriam: xenbase
  n2t: xenbase
  ncbi: Xenbase
  prefixcommons: xenbase
  re3data: r3d100011331
  uniprot: DB-0129
name: Xenbase
namespace_in_lui: false
pattern: ^XB\-\w+\-\d+$
preferred_prefix: xenbase
prefix: xenbase
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/xenbase:$1
publications:
- doi: 10.1093/genetics/iyad018
  pubmed: '36755307'
- doi: 10.1186/s12859-022-04636-8
  pmc: PMC8939077
  pubmed: '35317743'
  title: 'The Xenopus phenotype ontology: bridging model organism phenotype data to
    human health and development'
  year: 2022
- doi: 10.1093/nar/gkz933
  pmc: PMC7145613
  pubmed: '31733057'
  title: 'Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model
    organism database'
  year: 2020
- doi: 10.3389/fphys.2019.00154
  pmc: PMC6399412
  pubmed: '30863320'
  title: 'Xenbase: Facilitating the Use of'
  year: 2019
- doi: 10.1007/978-1-4939-7737-6_10
  pmc: PMC6853059
  pubmed: '29761462'
  title: 'Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database'
  year: 2018
- doi: 10.1093/nar/gkx936
  pmc: PMC5753396
  pubmed: '29059324'
  title: 'Xenbase: a genomic, epigenomic and transcriptomic model organism database'
  year: 2018
- doi: 10.1016/j.ydbio.2016.03.030
  pmc: PMC5045824
  pubmed: '27039265'
  title: Xenopus genomic data and browser resources
  year: 2016
- doi: 10.1093/database/bau108
  pmc: PMC4224262
  pubmed: '25380782'
  title: 'The Virtual Xenbase: transitioning an online bioinformatics resource to
    a private cloud'
  year: 2014
- doi: 10.1093/nar/gku956
  pmc: PMC4384024
  pubmed: '25313157'
  title: Xenbase, the Xenopus model organism database; new virtualized system, data
    types and genomes
  year: 2014
- doi: 10.1186/2041-1480-4-31
  pmc: PMC3816597
  pubmed: '24139024'
  title: 'Enhanced XAO: the ontology of Xenopus anatomy and development underpins
    more accurate annotation of gene expression and queries on Xenbase'
  year: 2013
- doi: 10.1093/nar/gkp953
  pmc: PMC2808955
  pubmed: '19884130'
  title: 'Xenbase: gene expression and improved integration'
  year: 2009
- doi: doi:10.3389/fphys.2019.00154
  title: 'Xenbase: Facilitating the Use of Xenopus to Model Human Disease.'
- doi: doi:10.1007/978-1-4939-7737-6_10.
  title: 'Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.'
synonyms:
- Xenbase
twitter: Xenbase
uri_format: https://www.xenbase.org/entry/$1
