appears_in: []
depends_on: []
deprecated: false
description: The Saccharomyces Genome Database (SGD) project collects information
  and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.
example: S000002493
homepage: https://www.yeastgenome.org/
keywords:
- epigenetics
- eukaryotic
- genome
- life science
- nucleotide
- proteomics
- transcriptomics
license: CC-BY-4.0
mappings:
  biocontext: SGD
  edam: '2632'
  fairsharing: FAIRsharing.pzvw40
  go: SGD
  integbio: nbdc00202
  miriam: sgd
  n2t: sgd
  ncbi: SGD
  prefixcommons: sgd
  re3data: r3d100010419
  togoid: Sgd
  uniprot: DB-0095
  wikidata: P3406
name: Saccharomyces Genome Database
namespace_in_lui: false
pattern: ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$
preferred_prefix: sgd
prefix: sgd
providers:
- code: CURATOR_REVIEW
  description: Bio2RDF
  homepage: http://sgd.bio2rdf.org/fct
  name: Bio2RDF
  uri_format: http://sgd.bio2rdf.org/describe/?url=http://bio2rdf.org/sgd:$1
- code: agr
  description: SGD through the Alliance of Genome Resources
  homepage: https://www.alliancegenome.org
  name: SGD through the Alliance of Genome Resources
  uri_format: https://www.alliancegenome.org/gene/SGD:$1
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/sgd:$1
publications:
- doi: 10.1002/(sici)1097-0061(199812)14:16<1453::aid-yea348>3.0.co;2-g
  pmc: PMC3037831
  pubmed: '9885151'
  title: Expanding yeast knowledge online
  year: 1998
- doi: 10.1126/science.282.5396.2022
  pmc: PMC3057080
  pubmed: '9851918'
  title: 'Comparison of the complete protein sets of worm and yeast: orthology and
    divergence'
  year: 1998
- doi: 10.1093/nar/27.1.74
  pmc: PMC148101
  pubmed: '9847146'
  title: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities
    and structure
  year: 1999
- doi: 10.1093/nar/26.1.73
  pmc: PMC147204
  pubmed: '9399804'
  title: 'SGD: Saccharomyces Genome Database'
  year: 1998
- doi: 10.1126/science.277.5330.1259
  pmc: PMC3039837
  pubmed: '9297238'
  title: Yeast as a model organism
  year: 1997
- pmc: PMC3057085
  pubmed: '9169866'
  title: Genetic and physical maps of Saccharomyces cerevisiae
  year: 1997
- doi: 10.1073/pnas.94.11.5506
  pmc: PMC34160
  pubmed: '9159100'
  title: 'Molecular linguistics: extracting information from gene and protein sequences'
  year: 1997
- pubmed: '7660459'
  title: Genetic nomenclature guide. Saccharomyces cerevisiae
  year: 1995
- doi: 10.1093/database/baw020
  pmc: PMC4795930
  pubmed: '26989152'
  title: 'From one to many: expanding the Saccharomyces cerevisiae reference genome
    panel'
  year: 2016
- doi: 10.1101/pdb.top083840
  pmc: PMC5673599
  pubmed: '26631132'
  title: 'The Saccharomyces Genome Database: A Tool for Discovery'
  year: 2015
- doi: 10.1101/pdb.prot088922
  pmc: PMC5673602
  pubmed: '26631126'
  title: 'The Saccharomyces Genome Database: Exploring Genome Features and Their Annotations'
  year: 2015
- doi: 10.1101/pdb.prot088914
  pmc: PMC5673600
  pubmed: '26631125'
  title: 'The Saccharomyces Genome Database: Gene Product Annotation of Function,
    Process, and Component'
  year: 2015
- doi: 10.1101/pdb.prot088906
  pmc: PMC5673598
  pubmed: '26631124'
  title: 'The Saccharomyces Genome Database: Advanced Searching Methods and Data Mining'
  year: 2015
- doi: 10.1101/pdb.prot088898
  pmc: PMC5673601
  pubmed: '26631123'
  title: 'The Saccharomyces Genome Database: Exploring Biochemical Pathways and Mutant
    Phenotypes'
  year: 2015
- doi: 10.1093/nar/gkv1250
  pmc: PMC4702884
  pubmed: '26578556'
  title: The Saccharomyces Genome Database Variant Viewer
  year: 2015
- doi: 10.1002/dvg.22862
  pmc: PMC4545726
  pubmed: '25997651'
  title: Biocuration at the Saccharomyces genome database
  year: 2015
- doi: 10.1371/journal.pone.0120671
  pmc: PMC4363492
  pubmed: '25781462'
  title: AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces
    cerevisiae
  year: 2015
- doi: 10.1093/nar/gku975
  pmc: PMC4384031
  pubmed: '25313161'
  title: The complex portal--an encyclopaedia of macromolecular complexes
  year: 2014
- doi: 10.1093/database/bau075
  pmc: PMC4105709
  pubmed: '25052702'
  title: Standardized description of scientific evidence using the Evidence Ontology
    (ECO)
  year: 2014
- doi: 10.1534/g3.113.008995
  pmc: PMC3962479
  pubmed: '24374639'
  title: 'The reference genome sequence of Saccharomyces cerevisiae: then and now'
  year: 2014
- doi: 10.1093/nar/gkt1158
  pmc: PMC3965049
  pubmed: '24265222'
  title: Saccharomyces genome database provides new regulation data
  year: 2013
- doi: 10.1093/database/bat054
  pmc: PMC3706743
  pubmed: '23842463'
  title: A guide to best practices for Gene Ontology (GO) manual annotation
  year: 2013
- doi: 10.1093/database/bat012
  pmc: PMC3595989
  pubmed: '23487186'
  title: 'The new modern era of yeast genomics: community sequencing and the resulting
    annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome
    Database'
  year: 2013
- doi: 10.1093/database/bat004
  pmc: PMC3567487
  pubmed: '23396302'
  title: 'The YeastGenome app: the Saccharomyces Genome Database at your fingertips'
  year: 2013
- doi: 10.1093/database/bas001
  pmc: PMC3308158
  pubmed: '22434836'
  title: CvManGO, a method for leveraging computational predictions to improve literature-based
    Gene Ontology annotations
  year: 2012
- doi: 10.1093/database/bar062
  pmc: PMC3308152
  pubmed: '22434830'
  title: YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data
    as a multipurpose tool-kit
  year: 2012
- doi: 10.1093/database/bar057
  pmc: PMC3308148
  pubmed: '22434826'
  title: 'Considerations for creating and annotating the budding yeast Genome Map
    at SGD: a progress report'
  year: 2012
- doi: 10.1093/nar/gkr1029
  pmc: PMC3245034
  pubmed: '22110037'
  title: 'Saccharomyces Genome Database: the genomics resource of budding yeast'
  year: 2011
- doi: 10.1093/database/bar004
  pmc: PMC3067894
  pubmed: '21411447'
  title: 'Using computational predictions to improve literature-based Gene Ontology
    annotations: a feasibility study'
  year: 2011
- doi: 10.1093/database/bap001
  pmc: PMC2790299
  pubmed: '20157474'
  title: New mutant phenotype data curation system in the Saccharomyces Genome Database
  year: 2009
- doi: 10.1093/nar/gkp917
  pmc: PMC2808950
  pubmed: '19906697'
  title: Saccharomyces Genome Database provides mutant phenotype data
  year: 2009
- doi: 10.1016/j.tim.2009.04.005
  pmc: PMC3057094
  pubmed: '19577472'
  title: 'Functional annotations for the Saccharomyces cerevisiae genome: the knowns
    and the known unknowns'
  year: 2009
- doi: 10.1093/nar/gkm909
  pmc: PMC2238894
  pubmed: '17982175'
  title: 'Gene Ontology annotations at SGD: new data sources and annotation methods'
  year: 2007
- doi: 10.1093/nar/gkl931
  pmc: PMC1669759
  pubmed: '17142221'
  title: 'Expanded protein information at SGD: new pages and proteome browser'
  year: 2006
- doi: 10.1002/yea.1400
  pmc: PMC3040122
  pubmed: '17001629'
  title: 'Saccharomyces cerevisiae S288C genome annotation: a working hypothesis'
  year: 2006
- doi: 10.1093/nar/gkj117
  pmc: PMC1347479
  pubmed: '16381907'
  title: 'Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD)
    presenting an overview of the Saccharomyces cerevisiae genome'
  year: 2006
- doi: 10.1093/nar/gki023
  pmc: PMC539977
  pubmed: '15608219'
  title: 'Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources
    at the Saccharomyces Genome Database (SGD)'
  year: 2005
- doi: 10.1093/bib/5.1.9
  pmc: PMC3037832
  pubmed: '15153302'
  title: 'Saccharomyces genome database: underlying principles and organisation'
  year: 2004
- doi: 10.1093/nar/gkh033
  pmc: PMC308767
  pubmed: '14681421'
  title: Saccharomyces Genome Database (SGD) provides tools to identify and analyze
    sequences from Saccharomyces cerevisiae and related sequences from other organisms
  year: 2004
- doi: 10.1093/nar/gkg054
  pmc: PMC165501
  pubmed: '12519985'
  title: Saccharomyces Genome Database (SGD) provides biochemical and structural information
    for budding yeast proteins
  year: 2003
- doi: 10.1016/s0076-6879(02)50972-1
  pubmed: '12073322'
  title: Saccharomyces Genome Database
  year: 2002
- doi: 10.1093/nar/30.1.69
  pmc: PMC99086
  pubmed: '11752257'
  title: Saccharomyces Genome Database (SGD) provides secondary gene annotation using
    the Gene Ontology (GO)
  year: 2002
- doi: 10.1093/nar/29.1.80
  pmc: PMC29796
  pubmed: '11125055'
  title: Saccharomyces Genome Database provides tools to survey gene expression and
    functional analysis data
  year: 2001
- doi: 10.1093/nar/28.1.77
  pmc: PMC102447
  pubmed: '10592186'
  title: Integrating functional genomic information into the Saccharomyces genome
    database
  year: 2000
- doi: 10.1002/9780470089941.et1104s01
  title: Using Model Organism Databases (MODs)
  year: 2009
- doi: 10.1002/(SICI)1097-0061(199812)14:16<1453::AID-YEA348>3.0.CO;2-G
  title: Expanding yeast knowledge online.
synonyms: []
twitter: yeastgenome
uri_format: https://www.yeastgenome.org/locus/$1
