appears_in: []
contributor_extras:
- email: aireland@lbl.gov
  github: ialarmedalien
  name: AJ Ireland
  orcid: 0000-0003-1982-9065
- email: seaver@anl.gov
  github: samseaver
  name: Sam Seaver
  orcid: 0000-0002-7674-5194
depends_on: []
deprecated: true
description: This cooperative effort, which includes Fellowship for Interpretation
  of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses
  on the development of the comparative genomics environment called the SEED. It is
  a framework to support comparative analysis and annotation of genomes, and the development
  of curated genomic data (annotation). Curation is performed at the level of subsystems
  by an expert annotator, across many genomes, and not on a gene by gene basis. This
  collection references subsystems.
example: Biotin_biosynthesis
example_extras: []
homepage: http://seed-viewer.theseed.org/seedviewer.cgi
keywords: []
mappings:
  biocontext: SEED
  go: SEED
  miriam: seed
  n2t: seed
  ncbi: SEED
name: SEED Subsystem
namespace_in_lui: false
pattern: ^\w+$
preferred_prefix: seed.subsystem
prefix: seed.subsystem
providers: []
publications:
- doi: 10.1093/nar/gki866
  pmc: PMC1251668
  pubmed: '16214803'
  title: The Subsystems Approach to Genome Annotation and its Use in the Project to
    Annotate 1000 Genomes
  year: 2005
repository: https://github.com/TheSEED
synonyms:
- seed
uri_format: https://pubseed.theseed.org/SubsysEditor.cgi?page=ShowSubsystem&subsystem=$1
