appears_in: []
contact:
  email: toni.gabaldon@crg.eu
  github: tgabaldon
  name: Toni Gabaldón
  orcid: 0000-0003-0019-1735
depends_on: []
deprecated: false
description: PhylomeDB is a database of complete phylomes derived for different genomes
  within a specific taxonomic range. It provides alignments, phylogentic trees and
  tree-based orthology predictions for all encoded proteins.
example: Phy000CLXM_RAT
homepage: http://phylomedb.org/
keywords:
- genome
- life science
- phylogenetics
- phylogenomics
- phylogeny
- protein
- taxonomy
mappings:
  biocontext: PHYLOMEDB
  fairsharing: FAIRsharing.7hxxc4
  integbio: nbdc01764
  miriam: phylomedb
  n2t: phylomedb
  prefixcommons: phylomedb
  uniprot: DB-0144
name: PhylomeDB
namespace_in_lui: false
pattern: ^\w+$
preferred_prefix: phylomedb
prefix: phylomedb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/phylomedb:$1
publications:
- doi: 10.1093/nar/gkab966
  pmc: PMC8728271
  pubmed: '34718760'
  title: 'PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated
    gene phylogenies'
  year: 2022
- doi: 10.1093/nar/gkt1177
  pmc: PMC3964985
  pubmed: '24275491'
  title: 'PhylomeDB v4: zooming into the plurality of evolutionary histories of a
    genome'
  year: 2013
- doi: 10.1093/nar/gkq1109
  pmc: PMC3013701
  pubmed: '21075798'
  title: 'PhylomeDB v3.0: an expanding repository of genome-wide collections of trees,
    alignments and phylogeny-based orthology and paralogy predictions'
  year: 2010
- doi: 10.1093/nar/gkm899
  pmc: PMC2238872
  pubmed: '17962297'
  title: 'PhylomeDB: a database for genome-wide collections of gene phylogenies'
  year: 2007
synonyms: []
twitter: phylomedb
uri_format: http://phylomedb.org/?seqid=$1
