appears_in: []
contact:
  email: perriere@biomserv.univ-lyon1.fr
  name: Guy Perrière
  orcid: 0000-0002-6850-6265
depends_on: []
deprecated: false
description: HOGENOM is a database of homologous genes from fully sequenced organisms
  (bacteria, archeae and eukarya). This collection references phylogenetic trees which
  can be retrieved using either UniProt accession numbers, or HOGENOM tree family
  identifier.
example: HBG284870
homepage: http://pbil.univ-lyon1.fr/databases/hogenom/
keywords:
- classification
- life science
- phylogenetics
- phylogeny
- sequence
mappings:
  biocontext: HOGENOM
  fairsharing: FAIRsharing.qe8tz8
  integbio: nbdc01858
  miriam: hogenom
  n2t: hogenom
  prefixcommons: hogenom
  uniprot: DB-0044
name: Database of Complete Genome Homologous Genes Families
namespace_in_lui: false
pattern: ^\w+$
preferred_prefix: hogenom
prefix: hogenom
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/hogenom:$1
publications:
- doi: 10.1186/1471-2105-10-s6-s3
  pmc: PMC2697650
  pubmed: '19534752'
  title: Databases of homologous gene families for comparative genomics
  year: 2009
- doi: 10.1101/gr.10.3.379
  pmc: PMC311423
  pubmed: '10720578'
  title: 'HOBACGEN: database system for comparative genomics in bacteria'
  year: 2000
- doi: 10.1186/1471-2105-10-S6-S3
  title: Databases of homologous gene families for comparative genomics.
synonyms: []
uri_format: http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1
