appears_in: [] contact: email: gabdank@stanford.edu name: Idan Gabdank orcid: 0000-0001-5025-5886 depends_on: [] deprecated: false description: The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. example: ENCSR163RYW homepage: https://www.encodeproject.org keywords: - epigenetics - functional genomics mappings: biocontext: ENCODE cellosaurus: ENCODE fairsharing: FAIRsharing.v0hbjs miriam: encode n2t: encode re3data: r3d100013051 name: Encyclopedia of DNA Elements namespace_in_lui: false pattern: ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$ preferred_prefix: encode prefix: encode providers: [] publications: - doi: 10.1038/s41586-020-2493-4 pmc: PMC7410828 pubmed: '32728249' title: Expanded encyclopaedias of DNA elements in the human and mouse genomes year: 2020 - doi: 10.1038/s41586-020-2449-8 pmc: PMC7410827 pubmed: '32728248' title: Perspectives on ENCODE year: 2020 - doi: 10.1002/cpbi.89 pmc: PMC7307447 pubmed: '31751002' title: The ENCODE Portal as an Epigenomics Resource year: 2019 - doi: 10.1093/nar/gkz1062 pmc: PMC7061942 pubmed: '31713622' title: New developments on the Encyclopedia of DNA Elements (ENCODE) data portal year: 2020 - doi: 10.1093/nar/gkx1081 pmc: PMC5753278 pubmed: '29126249' title: 'The Encyclopedia of DNA elements (ENCODE): data portal update' year: 2018 - doi: 10.1371/journal.pone.0175310 pmc: PMC5389787 pubmed: '28403240' title: 'SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata' year: 2017 - doi: 10.1093/database/baw001 pmc: PMC4792520 pubmed: '26980513' title: Principles of metadata organization at the ENCODE data coordination center year: 2016 - doi: 10.1093/nar/gkv1160 pmc: PMC4702836 pubmed: '26527727' title: ENCODE data at the ENCODE portal year: 2015 - doi: 10.1093/database/bav010 pmc: PMC4360730 pubmed: '25776021' title: Ontology application and use at the ENCODE DCC year: 2015 - doi: 10.1093/nar/gks1172 pmc: PMC3531152 pubmed: '23193274' title: 'ENCODE data in the UCSC Genome Browser: year 5 update' year: 2012 - doi: 10.1093/nar/gkr1012 pmc: PMC3245183 pubmed: '22075998' title: 'ENCODE whole-genome data in the UCSC Genome Browser: update 2012' year: 2011 - doi: 10.1093/nar/gkq1017 pmc: PMC3013645 pubmed: '21037257' title: ENCODE whole-genome data in the UCSC genome browser (2011 update) year: 2010 - doi: 10.1093/nar/gkp961 pmc: PMC2808953 pubmed: '19920125' title: ENCODE whole-genome data in the UCSC Genome Browser year: 2009 - doi: 10.1093/nar/gkl1017 pmc: PMC1781110 pubmed: '17166863' title: The ENCODE Project at UC Santa Cruz year: 2006 - doi: 10.1126/science.1105136 pubmed: '15499007' title: The ENCODE (ENCyclopedia Of DNA Elements) Project year: 2004 synonyms: [] uri_format: https://www.encodeproject.org/$1