appears_in: []
depends_on: []
deprecated: false
description: BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides
  an electronic reference source on the genomes and metabolic pathways of sequenced
  organisms.
example: ECOLI:CYT-D-UBIOX-CPLX
homepage: http://biocyc.org
keywords:
- genome
- pathway
- sequence
mappings:
  biocontext: BIOCYC
  edam: '2104'
  go: BioCyc
  integbio: nbdc00252
  miriam: biocyc
  n2t: biocyc
  pathguide: '8'
  prefixcommons: biocyc
  uniprot: DB-0005
name: BioCyc collection of metabolic pathway databases
namespace_in_lui: false
pattern: ^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$
preferred_prefix: biocyc
prefix: biocyc
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/biocyc:$1
publications:
- doi: 10.1093/bib/bbx085
  pubmed: '29447345'
- doi: 10.1093/nar/gkv1164
  pmc: PMC4702838
  pubmed: '26527732'
  title: The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection
    of pathway/genome databases
  year: 2015
- doi: 10.1093/nar/gki892
  pmc: PMC1266070
  pubmed: '16246909'
  title: Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
  year: 2005
synonyms: []
uri_format: http://biocyc.org/getid?id=$1
